Wall clock time and date at job start Wed Apr 1 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40443 * 126.82250 * 2 1 4 4 C 1.30709 * 106.79128 * 180.26341 * 3 2 1 5 5 C 1.50706 * 125.52614 * 179.71624 * 4 3 2 6 6 C 1.53005 * 117.49680 * 8.66245 * 5 4 3 7 7 C 1.52995 * 117.49670 * 300.03978 * 5 4 3 8 8 N 1.33235 * 108.94876 * 359.74831 * 4 3 2 9 9 C 1.30833 * 109.83044 * 0.02562 * 8 4 3 10 10 C 1.50701 * 125.96520 * 179.97438 * 9 8 4 11 11 C 1.50692 * 109.46962 * 90.02135 * 10 9 8 12 12 O 1.21280 * 120.00268 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99809 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46896 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.52249 * 55.08725 * 15 14 13 17 17 C 1.53072 * 109.62425 * 175.10710 * 15 14 13 18 18 C 1.53042 * 109.66170 * 181.16951 * 17 15 14 19 19 C 1.53185 * 109.31328 * 298.70430 * 18 17 15 20 20 N 1.46932 * 108.77860 * 54.63608 * 19 18 17 21 21 C 1.36934 * 120.63392 * 126.41072 * 20 19 18 22 22 H 1.07997 * 119.99862 * 331.80624 * 21 20 19 23 23 C 1.38806 * 120.00015 * 151.80754 * 21 20 19 24 24 N 1.31624 * 120.00191 * 343.08772 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 163.08448 * 23 21 20 26 26 H 1.48503 * 109.47142 * 60.00161 * 25 23 21 27 27 H 1.48498 * 109.47084 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47267 * 300.00095 * 25 23 21 29 29 C 1.46928 * 118.73342 * 306.38841 * 20 19 18 30 30 H 1.09003 * 109.47189 * 270.16709 * 1 2 3 31 31 H 1.09002 * 109.47886 * 30.17078 * 1 2 3 32 32 H 1.08999 * 109.47383 * 150.17574 * 1 2 3 33 33 H 1.08999 * 115.54811 * 154.36999 * 5 4 3 34 34 H 1.08998 * 117.50006 * 359.97438 * 6 5 4 35 35 H 1.09001 * 117.49676 * 145.02433 * 6 5 4 36 36 H 1.09000 * 117.49691 * 214.97408 * 7 5 4 37 37 H 1.08998 * 117.50529 * 359.97438 * 7 5 4 38 38 H 1.09005 * 109.46916 * 330.02384 * 10 9 8 39 39 H 1.09000 * 109.47229 * 210.02677 * 10 9 8 40 40 H 0.97002 * 119.99886 * 0.02562 * 13 11 10 41 41 H 1.09002 * 109.46647 * 60.00574 * 14 13 11 42 42 H 1.09000 * 109.47544 * 300.00625 * 14 13 11 43 43 H 1.09003 * 109.34638 * 61.14889 * 17 15 14 44 44 H 1.09001 * 109.44540 * 301.25971 * 17 15 14 45 45 H 1.09003 * 109.49717 * 178.74555 * 18 17 15 46 46 H 1.08999 * 109.49263 * 58.65769 * 18 17 15 47 47 H 1.08996 * 109.58772 * 294.84198 * 19 18 17 48 48 H 1.09009 * 109.70268 * 174.48881 * 19 18 17 49 49 H 0.96995 * 120.00379 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.58613 * 173.39178 * 29 20 19 51 51 H 1.08995 * 109.59058 * 293.68043 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5347 0.6765 -0.0058 5 6 4.7776 1.5289 -0.0141 6 6 4.6024 3.0353 0.1884 7 6 4.9695 2.4865 -1.1918 8 7 3.5096 -0.6556 -0.0038 9 6 2.2707 -1.0761 0.0027 10 6 1.8246 -2.5156 0.0062 11 6 1.6824 -2.9938 1.4281 12 8 1.9194 -2.2399 2.3481 13 7 1.2908 -4.2592 1.6775 14 6 1.1520 -4.7240 3.0599 15 6 0.6993 -6.1854 3.0635 16 1 1.3938 -6.7833 2.4734 17 6 0.6705 -6.7112 4.5008 18 6 0.2458 -8.1815 4.5029 19 6 -1.1638 -8.3025 3.9156 20 7 -1.1791 -7.6719 2.5886 21 6 -1.6274 -8.3612 1.4936 22 1 -1.5443 -9.4375 1.4619 23 6 -2.1886 -7.6766 0.4245 24 7 -2.5965 -6.4348 0.5793 25 14 -2.3649 -8.5177 -1.2341 26 1 -3.2217 -9.7220 -1.0899 27 1 -2.9884 -7.5790 -2.2013 28 1 -1.0243 -8.9204 -1.7300 29 6 -0.7047 -6.2874 2.4590 30 1 -0.3634 0.0030 1.0277 31 1 -0.3635 0.8884 -0.5165 32 1 -0.3634 -0.8915 -0.5111 33 1 5.6690 1.0644 0.4074 34 1 3.5882 3.4099 0.3272 35 1 5.3787 3.5622 0.7433 36 1 5.9873 2.6523 -1.5448 37 1 4.1972 2.4997 -1.9608 38 1 2.5649 -3.1266 -0.5103 39 1 0.8647 -2.5998 -0.5033 40 1 1.1009 -4.8620 0.9417 41 1 0.4117 -4.1126 3.5761 42 1 2.1118 -4.6400 3.5697 43 1 -0.0407 -6.1270 5.0849 44 1 1.6636 -6.6194 4.9407 45 1 0.2477 -8.5593 5.5254 46 1 0.9428 -8.7622 3.8987 47 1 -1.8761 -7.7978 4.5683 48 1 -1.4345 -9.3544 3.8234 49 1 -2.9890 -5.9565 -0.1677 50 1 -0.6698 -6.0102 1.4054 51 1 -1.3809 -5.6180 2.9907 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480269726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:11 Heat of formation + Delta-G solvation = 68.986413 kcal Electronic energy + Delta-G solvation = -30577.433635 eV Core-core repulsion = 26513.871082 eV Total energy + Delta-G solvation = -4063.562554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.28095 -40.82573 -39.31360 -38.18060 -36.16014 -34.93375 -34.80040 -33.78670 -32.50297 -31.55091 -30.05147 -28.31712 -27.23255 -26.57148 -24.76084 -23.87412 -23.31265 -22.76892 -22.06082 -21.32572 -20.90120 -20.47284 -18.72499 -18.31546 -18.08310 -17.14137 -16.93739 -16.79808 -16.51512 -16.31804 -15.77296 -15.66630 -15.37850 -15.10844 -14.85935 -14.66850 -14.47744 -14.42498 -14.20983 -13.98844 -13.79629 -13.69744 -13.15687 -13.10459 -12.90106 -12.83838 -12.72039 -12.47996 -12.40578 -12.22703 -11.97420 -11.89337 -11.76757 -11.53894 -11.48772 -11.36872 -11.11468 -11.07892 -11.04415 -10.74002 -10.49688 -10.21278 -10.09388 -8.61535 -7.82076 -5.27584 0.43048 1.26786 1.52045 1.52330 1.53835 1.60282 1.61679 2.24172 2.55568 2.77981 2.98196 3.30023 3.33536 3.46761 3.63715 3.79977 3.87392 3.96864 4.02492 4.06074 4.10592 4.17012 4.21742 4.23381 4.36590 4.38275 4.54035 4.55111 4.59894 4.66860 4.73895 4.82757 4.89300 4.89890 4.90847 5.06033 5.10556 5.17327 5.22555 5.24200 5.25306 5.36423 5.36762 5.40499 5.48545 5.58737 5.71382 5.72861 5.81873 6.44643 6.47577 7.01936 7.13768 7.20785 7.90530 8.43528 9.23367 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.002380 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.345447 B =11762.942550 C =13071.799104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.375 5.375 3 N -0.339 5.339 4 C 0.239 3.761 5 C -0.096 4.096 6 C -0.152 4.152 7 C -0.142 4.142 8 N -0.559 5.559 9 C 0.296 3.704 10 C -0.063 4.063 11 C 0.522 3.478 12 O -0.581 6.581 13 N -0.709 5.709 14 C 0.141 3.859 15 C -0.111 4.111 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.122 4.122 19 C 0.135 3.865 20 N -0.611 5.611 21 C -0.264 4.264 22 H 0.061 0.939 23 C -0.041 4.041 24 N -0.928 5.928 25 Si 0.961 3.039 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.276 1.276 29 C 0.189 3.811 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.136 0.864 34 H 0.088 0.912 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.414 0.586 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.008 0.992 48 H 0.050 0.950 49 H 0.251 0.749 50 H 0.070 0.930 51 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.503 11.639 -2.275 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.165 5.165 3 N -0.168 5.168 4 C -0.042 4.042 5 C -0.116 4.116 6 C -0.190 4.190 7 C -0.180 4.180 8 N -0.287 5.287 9 C 0.019 3.981 10 C -0.104 4.104 11 C 0.307 3.693 12 O -0.462 6.462 13 N -0.360 5.360 14 C 0.016 3.984 15 C -0.132 4.132 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.161 4.161 19 C 0.010 3.990 20 N -0.334 5.334 21 C -0.395 4.395 22 H 0.079 0.921 23 C -0.237 4.237 24 N -0.574 5.574 25 Si 0.790 3.210 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.201 1.201 29 C 0.063 3.937 30 H 0.096 0.904 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.154 0.846 34 H 0.107 0.893 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.104 0.896 38 H 0.173 0.827 39 H 0.169 0.831 40 H 0.251 0.749 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.076 0.924 47 H 0.026 0.974 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.088 0.912 51 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges 11.514 12.778 -1.727 17.286 hybrid contribution -1.119 -0.906 -0.914 1.705 sum 10.395 11.872 -2.641 15.999 Atomic orbital electron populations 1.22316 0.71713 1.06913 1.04653 1.50323 1.09005 1.03330 1.53843 1.77816 1.01692 1.08623 1.28679 1.23684 0.93420 0.89431 0.97641 1.20257 0.92557 0.90629 1.08186 1.23087 1.03806 0.92170 0.99910 1.23091 1.04275 0.99689 0.90970 1.70190 1.20608 1.11589 1.26312 1.23717 0.86032 0.92477 0.95863 1.20332 1.07631 0.86933 0.95544 1.20426 0.76156 0.81835 0.90877 1.90728 1.51883 1.55810 1.47754 1.45920 1.67657 1.12495 1.09953 1.21239 1.00469 0.94337 0.82326 1.21909 0.99043 0.93710 0.98499 0.90891 1.21366 1.01489 0.96145 0.94830 1.21863 0.97051 0.96377 1.00760 1.21104 0.95226 0.96352 0.86322 1.44311 1.73304 1.12379 1.03377 1.19419 1.33146 0.91507 0.95395 0.92135 1.25664 0.98199 0.97545 1.02320 1.70170 1.43936 1.12243 1.31017 0.85451 0.77877 0.77462 0.80228 1.21185 1.21809 1.20146 1.20612 0.89329 0.84194 0.99579 0.90393 0.87336 0.86312 0.84644 0.89348 0.85471 0.85139 0.89595 0.82677 0.83108 0.74931 0.93127 0.91263 0.92866 0.90459 0.90123 0.92387 0.97358 0.93167 0.93931 0.91191 0.99492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 11.33 127.77 1.45 3.04 16 2 N -0.38 -10.31 4.04 -359.87 -1.45 -11.76 16 3 N -0.34 -10.33 12.24 -51.33 -0.63 -10.96 16 4 C 0.24 7.22 7.69 138.64 1.07 8.28 16 5 C -0.10 -2.11 6.33 -11.54 -0.07 -2.19 16 6 C -0.15 -2.59 10.13 30.60 0.31 -2.28 16 7 C -0.14 -2.28 10.23 30.59 0.31 -1.96 16 8 N -0.56 -17.97 11.19 -179.72 -2.01 -19.98 16 9 C 0.30 8.42 6.48 138.23 0.90 9.32 16 10 C -0.06 -1.36 6.03 29.10 0.18 -1.18 16 11 C 0.52 15.04 7.82 87.65 0.69 15.72 16 12 O -0.58 -21.92 16.03 -3.03 -0.05 -21.97 16 13 N -0.71 -19.61 5.33 -463.06 -2.47 -22.08 16 14 C 0.14 4.24 5.08 86.38 0.44 4.67 16 15 C -0.11 -3.61 2.38 -10.71 -0.03 -3.64 16 16 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 17 C -0.10 -2.92 5.17 30.63 0.16 -2.77 16 18 C -0.12 -3.70 6.08 30.67 0.19 -3.51 16 19 C 0.14 5.33 6.52 86.36 0.56 5.89 16 20 N -0.61 -28.54 3.00 -699.10 -2.09 -30.63 16 21 C -0.26 -13.61 9.58 84.03 0.81 -12.80 16 22 H 0.06 3.09 7.88 -2.91 -0.02 3.07 16 23 C -0.04 -2.12 4.92 84.86 0.42 -1.70 16 24 N -0.93 -49.70 11.20 21.65 0.24 -49.45 16 25 Si 0.96 41.31 29.59 68.60 2.03 43.34 16 26 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 29 C 0.19 8.06 4.38 86.36 0.38 8.44 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.12 1.59 7.10 -2.39 -0.02 1.57 16 33 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.09 1.78 7.88 -2.39 -0.02 1.76 16 35 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.16 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.15 2.26 7.12 -2.39 -0.02 2.24 16 40 H 0.41 10.51 7.70 -92.71 -0.71 9.80 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 48 H 0.05 1.95 7.93 -2.38 -0.02 1.93 16 49 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 50 H 0.07 3.21 5.26 -2.39 -0.01 3.20 16 51 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: -1.00 -74.26 413.53 1.53 -72.73 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.22 Total: 27.44 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 7.74 Total: 23.33 kcal Atomic # 7 Polarization: -136.45 SS G_CDS: -8.41 Total: -144.87 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.05 Total: -21.97 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -74.26 1.53 -72.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480269726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.721 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds