Wall clock time and date at job start Wed Apr 1 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40439 * 126.82825 * 2 1 4 4 C 1.30715 * 106.79434 * 180.15884 * 3 2 1 5 5 C 1.50707 * 125.52485 * 179.86106 * 4 3 2 6 6 C 1.53001 * 117.49930 * 8.43967 * 5 4 3 7 7 C 1.53000 * 117.49778 * 299.77759 * 5 4 3 8 8 N 1.33233 * 108.94708 * 359.59937 * 4 3 2 9 9 C 1.30837 * 109.83039 * 0.25960 * 8 4 3 10 10 C 1.50693 * 125.96248 * 180.02562 * 9 8 4 11 11 C 1.50707 * 109.47114 * 89.97891 * 10 9 8 12 12 O 1.21280 * 119.99685 * 0.02562 * 11 10 9 13 13 N 1.34764 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00219 * 174.55770 * 13 11 10 15 15 C 1.53003 * 110.43414 * 303.00112 * 14 13 11 16 16 N 1.46504 * 109.47006 * 307.76011 * 15 14 13 17 17 C 1.36938 * 120.00045 * 174.95301 * 16 15 14 18 18 H 1.07998 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99738 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00384 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47025 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47005 * 119.99687 * 21 19 17 24 24 H 1.48496 * 109.47131 * 239.99924 * 21 19 17 25 25 C 1.54886 * 110.49280 * 180.45835 * 14 13 11 26 26 C 1.55236 * 102.58814 * 279.19050 * 25 14 13 27 27 C 1.54265 * 104.22864 * 322.07899 * 26 25 14 28 28 C 1.53879 * 106.59833 * 23.61342 * 27 26 25 29 29 H 1.08996 * 109.46610 * 270.28962 * 1 2 3 30 30 H 1.09003 * 109.46460 * 30.28746 * 1 2 3 31 31 H 1.09001 * 109.47455 * 150.28536 * 1 2 3 32 32 H 1.09000 * 115.54884 * 154.11182 * 5 4 3 33 33 H 1.09002 * 117.49713 * 0.02562 * 6 5 4 34 34 H 1.09001 * 117.49632 * 145.02381 * 6 5 4 35 35 H 1.08996 * 117.50138 * 214.98278 * 7 5 4 36 36 H 1.09006 * 117.50070 * 359.97438 * 7 5 4 37 37 H 1.09000 * 109.47364 * 209.97761 * 10 9 8 38 38 H 1.09002 * 109.47395 * 329.98262 * 10 9 8 39 39 H 0.96999 * 120.00219 * 354.55619 * 13 11 10 40 40 H 1.09004 * 109.47041 * 67.75539 * 15 14 13 41 41 H 1.08999 * 109.47599 * 187.76414 * 15 14 13 42 42 H 0.97007 * 120.00027 * 354.96032 * 16 15 14 43 43 H 0.97002 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.75325 * 37.57628 * 25 14 13 45 45 H 1.08991 * 110.76112 * 160.94708 * 25 14 13 46 46 H 1.08996 * 110.46858 * 203.38938 * 26 25 14 47 47 H 1.08996 * 110.47253 * 80.76760 * 26 25 14 48 48 H 1.08997 * 110.03688 * 264.32707 * 27 26 25 49 49 H 1.09005 * 110.03488 * 142.89778 * 27 26 25 50 50 H 1.09004 * 110.03219 * 240.71244 * 28 27 26 51 51 H 1.09007 * 110.02933 * 119.28647 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1241 0.0000 4 6 3.5349 0.6763 -0.0035 5 6 4.7778 1.5287 -0.0078 6 6 4.6018 3.0355 0.1910 7 6 4.9756 2.4833 -1.1869 8 7 3.5096 -0.6557 0.0032 9 6 2.2707 -1.0762 0.0054 10 6 1.8246 -2.5156 0.0132 11 6 1.6763 -2.9879 1.4366 12 8 1.9094 -2.2300 2.3543 13 7 1.2837 -4.2520 1.6897 14 6 1.2542 -4.7478 3.0680 15 6 2.6340 -4.6107 3.7147 16 7 3.6417 -5.2318 2.8516 17 6 4.9694 -5.1417 3.1747 18 1 5.2736 -4.6132 4.0661 19 6 5.9242 -5.7298 2.3566 20 7 5.5535 -6.3744 1.2706 21 14 7.7353 -5.6076 2.7977 22 1 7.8868 -4.8380 4.0587 23 1 8.2932 -6.9716 2.9809 24 1 8.4655 -4.9167 1.7048 25 6 0.7830 -6.2228 3.1036 26 6 -0.7602 -6.0876 3.0042 27 6 -1.0870 -4.8406 3.8517 28 6 0.1939 -3.9888 3.8922 29 1 -0.3632 0.0052 1.0276 30 1 -0.3632 0.8875 -0.5183 31 1 -0.3634 -0.8925 -0.5094 32 1 5.6671 1.0652 0.4192 33 1 3.5870 3.4102 0.3253 34 1 5.3756 3.5633 0.7484 35 1 5.9950 2.6482 -1.5355 36 1 4.2070 2.4946 -1.9598 37 1 0.8668 -2.6019 -0.4999 38 1 2.5670 -3.1288 -0.4976 39 1 1.0206 -4.8336 0.9594 40 1 2.8699 -3.5547 3.8470 41 1 2.6314 -5.1068 4.6853 42 1 3.3685 -5.7067 2.0511 43 1 6.2208 -6.7850 0.6987 44 1 1.1805 -6.7759 2.2525 45 1 1.0697 -6.6974 4.0420 46 1 -1.2477 -6.9695 3.4195 47 1 -1.0636 -5.9350 1.9685 48 1 -1.3692 -5.1388 4.8614 49 1 -1.8964 -4.2761 3.3887 50 1 0.5332 -3.8736 4.9217 51 1 0.0060 -3.0108 3.4489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481912682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:17 Heat of formation + Delta-G solvation = 88.551216 kcal Electronic energy + Delta-G solvation = -31785.679823 eV Core-core repulsion = 27722.965663 eV Total energy + Delta-G solvation = -4062.714160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04982 -40.03940 -37.65442 -37.13017 -34.28049 -33.84230 -33.13994 -32.37628 -30.96909 -29.07820 -28.60263 -27.87886 -27.09952 -24.45953 -23.68379 -22.45208 -22.17327 -21.75175 -20.42031 -20.09979 -19.62883 -19.00747 -17.17520 -17.03954 -16.93637 -15.98666 -15.69584 -15.38920 -15.13519 -14.89892 -14.67495 -14.53399 -14.12873 -13.66047 -13.52370 -13.43191 -13.20664 -13.12614 -12.95989 -12.64882 -12.24856 -12.10654 -11.99170 -11.68645 -11.51684 -11.34242 -11.27318 -11.10464 -10.93270 -10.87849 -10.76454 -10.66548 -10.54508 -10.40927 -10.32631 -9.93500 -9.73669 -9.65748 -9.59830 -9.36676 -9.04668 -8.72838 -8.57405 -6.78052 -5.67004 -2.92519 1.64920 2.33329 2.85444 2.99223 3.50016 3.52158 3.57990 3.59807 3.89707 4.01130 4.39549 4.50084 4.61944 4.73806 4.76852 4.80532 4.85410 4.93651 4.95949 5.01044 5.12559 5.15873 5.23864 5.47672 5.50895 5.56608 5.59092 5.64714 5.65882 5.70493 5.73029 5.75427 5.90814 5.94389 5.99290 6.05630 6.13277 6.18698 6.30639 6.33940 6.41392 6.43993 6.54627 6.57666 6.62097 6.86825 6.94552 7.12737 7.82287 7.85965 8.31254 8.52744 8.59013 9.64893 10.21369 10.57626 11.56448 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007279 B = 0.004329 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.956824 B = 6466.299450 C = 9550.196901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.378 5.378 3 N -0.321 5.321 4 C 0.257 3.743 5 C -0.068 4.068 6 C -0.161 4.161 7 C -0.160 4.160 8 N -0.515 5.515 9 C 0.310 3.690 10 C -0.069 4.069 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.705 5.705 14 C 0.172 3.828 15 C 0.145 3.855 16 N -0.723 5.723 17 C -0.227 4.227 18 H 0.067 0.933 19 C -0.014 4.014 20 N -0.936 5.936 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.294 1.294 24 H -0.292 1.292 25 C -0.119 4.119 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.396 0.604 40 H 0.044 0.956 41 H 0.019 0.981 42 H 0.381 0.619 43 H 0.252 0.748 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.033 9.597 -4.789 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.168 5.168 3 N -0.150 5.150 4 C -0.025 4.025 5 C -0.089 4.089 6 C -0.199 4.199 7 C -0.198 4.198 8 N -0.241 5.241 9 C 0.033 3.967 10 C -0.111 4.111 11 C 0.316 3.684 12 O -0.396 6.396 13 N -0.357 5.357 14 C 0.086 3.914 15 C 0.017 3.983 16 N -0.367 5.367 17 C -0.358 4.358 18 H 0.085 0.915 19 C -0.209 4.209 20 N -0.586 5.586 21 Si 0.735 3.265 22 H -0.207 1.207 23 H -0.221 1.221 24 H -0.219 1.219 25 C -0.157 4.157 26 C -0.162 4.162 27 C -0.160 4.160 28 C -0.162 4.162 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.230 0.770 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.215 0.785 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.089 0.911 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.713 10.738 -4.000 19.448 hybrid contribution 0.645 -0.716 -0.390 1.040 sum -15.068 10.022 -4.390 18.621 Atomic orbital electron populations 1.21885 0.74362 1.04306 1.03875 1.50057 1.07485 1.03835 1.55427 1.77848 1.01390 1.07435 1.28334 1.23010 0.92253 0.89342 0.97872 1.20065 0.93757 0.89779 1.05280 1.23021 1.03575 0.93982 0.99347 1.23015 1.03022 1.02127 0.91653 1.70333 1.19363 1.10532 1.23892 1.23301 0.85961 0.91282 0.96164 1.20218 1.04456 0.88580 0.97868 1.19724 0.76684 0.82356 0.89677 1.90719 1.48442 1.54504 1.45964 1.45689 1.68216 1.12824 1.08928 1.21363 0.96043 0.92919 0.81090 1.21051 0.86390 0.97876 0.92990 1.42167 1.01909 1.64664 1.27972 1.19248 0.83094 1.27524 1.05970 0.91485 1.24629 0.97657 1.01160 0.97435 1.69642 1.32279 1.41244 1.15418 0.86160 0.85926 0.76939 0.77504 1.20694 1.22101 1.21895 1.22797 0.94256 0.94977 1.03656 1.22458 0.96352 0.97672 0.99759 1.22134 0.97614 0.96361 0.99871 1.22437 0.94025 0.99152 1.00588 0.90238 0.89160 0.89336 0.85018 0.88011 0.87975 0.87849 0.88736 0.87354 0.84652 0.76977 0.93858 0.96294 0.78506 0.93835 0.90457 0.89777 0.91802 0.91938 0.92079 0.92453 0.91097 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.90 11.33 59.85 0.68 1.58 16 2 N -0.38 -5.58 4.04 -65.10 -0.26 -5.84 16 3 N -0.32 -5.35 12.24 32.42 0.40 -4.96 16 4 C 0.26 4.53 7.69 -156.86 -1.21 3.33 16 5 C -0.07 -0.98 6.33 -91.77 -0.58 -1.56 16 6 C -0.16 -1.82 10.14 -26.69 -0.27 -2.09 16 7 C -0.16 -1.77 10.24 -26.69 -0.27 -2.04 16 8 N -0.52 -10.15 11.19 -8.16 -0.09 -10.24 16 9 C 0.31 5.15 6.48 -155.69 -1.01 4.15 16 10 C -0.07 -0.93 6.03 -29.03 -0.17 -1.10 16 11 C 0.53 8.73 7.06 -10.99 -0.08 8.66 16 12 O -0.52 -10.72 13.00 5.56 0.07 -10.65 16 13 N -0.71 -10.19 4.54 -46.07 -0.21 -10.40 16 14 C 0.17 2.70 0.39 -130.16 -0.05 2.64 16 15 C 0.15 3.09 4.72 -4.04 -0.02 3.07 16 16 N -0.72 -18.31 5.30 -59.90 -0.32 -18.63 16 17 C -0.23 -6.58 9.99 -15.06 -0.15 -6.73 16 18 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.94 -28.26 13.06 55.49 0.72 -27.54 16 21 Si 0.90 23.40 29.55 -169.99 -5.02 18.37 16 22 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 25 C -0.12 -1.62 5.67 -24.55 -0.14 -1.75 16 26 C -0.12 -1.30 6.80 -24.88 -0.17 -1.47 16 27 C -0.12 -1.31 6.80 -25.61 -0.17 -1.49 16 28 C -0.12 -1.71 5.68 -25.61 -0.15 -1.85 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.54 7.11 -51.93 -0.37 0.17 16 32 H 0.13 1.88 8.14 -51.93 -0.42 1.46 16 33 H 0.10 1.21 7.87 -51.93 -0.41 0.80 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 0.89 7.13 -51.93 -0.37 0.52 16 38 H 0.14 1.90 8.14 -51.93 -0.42 1.48 16 39 H 0.40 4.59 8.50 -40.82 -0.35 4.25 16 40 H 0.04 1.06 6.49 -51.93 -0.34 0.72 16 41 H 0.02 0.41 8.02 -51.93 -0.42 0.00 16 42 H 0.38 9.78 7.27 -40.82 -0.30 9.48 16 43 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 45 H 0.08 1.21 7.97 -51.93 -0.41 0.79 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 51 H 0.07 1.07 6.63 -51.92 -0.34 0.73 16 LS Contribution 413.70 15.07 6.23 6.23 Total: -1.00 -38.09 413.70 -10.66 -48.75 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.33 Total: 12.05 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.86 Total: 2.84 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: 0.24 Total: -77.61 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -5.02 Total: 18.37 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -38.09 -10.66 -48.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481912682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.304 kcal (2) G-P(sol) polarization free energy of solvation -38.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds