Wall clock time and date at job start Wed Apr 1 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40439 * 126.82825 * 2 1 4 4 C 1.30715 * 106.79434 * 180.15884 * 3 2 1 5 5 C 1.50707 * 125.52485 * 179.86106 * 4 3 2 6 6 C 1.53001 * 117.49930 * 8.43967 * 5 4 3 7 7 C 1.53000 * 117.49778 * 299.77759 * 5 4 3 8 8 N 1.33233 * 108.94708 * 359.59937 * 4 3 2 9 9 C 1.30837 * 109.83039 * 0.25960 * 8 4 3 10 10 C 1.50693 * 125.96248 * 180.02562 * 9 8 4 11 11 C 1.50707 * 109.47114 * 89.97891 * 10 9 8 12 12 O 1.21280 * 119.99685 * 0.02562 * 11 10 9 13 13 N 1.34764 * 120.00155 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00219 * 174.55770 * 13 11 10 15 15 C 1.53003 * 110.43414 * 303.00112 * 14 13 11 16 16 N 1.46504 * 109.47006 * 307.76011 * 15 14 13 17 17 C 1.36938 * 120.00045 * 174.95301 * 16 15 14 18 18 H 1.07998 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.38810 * 119.99738 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00384 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99913 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47025 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47005 * 119.99687 * 21 19 17 24 24 H 1.48496 * 109.47131 * 239.99924 * 21 19 17 25 25 C 1.54886 * 110.49280 * 180.45835 * 14 13 11 26 26 C 1.55236 * 102.58814 * 279.19050 * 25 14 13 27 27 C 1.54265 * 104.22864 * 322.07899 * 26 25 14 28 28 C 1.53879 * 106.59833 * 23.61342 * 27 26 25 29 29 H 1.08996 * 109.46610 * 270.28962 * 1 2 3 30 30 H 1.09003 * 109.46460 * 30.28746 * 1 2 3 31 31 H 1.09001 * 109.47455 * 150.28536 * 1 2 3 32 32 H 1.09000 * 115.54884 * 154.11182 * 5 4 3 33 33 H 1.09002 * 117.49713 * 0.02562 * 6 5 4 34 34 H 1.09001 * 117.49632 * 145.02381 * 6 5 4 35 35 H 1.08996 * 117.50138 * 214.98278 * 7 5 4 36 36 H 1.09006 * 117.50070 * 359.97438 * 7 5 4 37 37 H 1.09000 * 109.47364 * 209.97761 * 10 9 8 38 38 H 1.09002 * 109.47395 * 329.98262 * 10 9 8 39 39 H 0.96999 * 120.00219 * 354.55619 * 13 11 10 40 40 H 1.09004 * 109.47041 * 67.75539 * 15 14 13 41 41 H 1.08999 * 109.47599 * 187.76414 * 15 14 13 42 42 H 0.97007 * 120.00027 * 354.96032 * 16 15 14 43 43 H 0.97002 * 119.99903 * 179.97438 * 20 19 17 44 44 H 1.09006 * 110.75325 * 37.57628 * 25 14 13 45 45 H 1.08991 * 110.76112 * 160.94708 * 25 14 13 46 46 H 1.08996 * 110.46858 * 203.38938 * 26 25 14 47 47 H 1.08996 * 110.47253 * 80.76760 * 26 25 14 48 48 H 1.08997 * 110.03688 * 264.32707 * 27 26 25 49 49 H 1.09005 * 110.03488 * 142.89778 * 27 26 25 50 50 H 1.09004 * 110.03219 * 240.71244 * 28 27 26 51 51 H 1.09007 * 110.02933 * 119.28647 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1241 0.0000 4 6 3.5349 0.6763 -0.0035 5 6 4.7778 1.5287 -0.0078 6 6 4.6018 3.0355 0.1910 7 6 4.9756 2.4833 -1.1869 8 7 3.5096 -0.6557 0.0032 9 6 2.2707 -1.0762 0.0054 10 6 1.8246 -2.5156 0.0132 11 6 1.6763 -2.9879 1.4366 12 8 1.9094 -2.2300 2.3543 13 7 1.2837 -4.2520 1.6897 14 6 1.2542 -4.7478 3.0680 15 6 2.6340 -4.6107 3.7147 16 7 3.6417 -5.2318 2.8516 17 6 4.9694 -5.1417 3.1747 18 1 5.2736 -4.6132 4.0661 19 6 5.9242 -5.7298 2.3566 20 7 5.5535 -6.3744 1.2706 21 14 7.7353 -5.6076 2.7977 22 1 7.8868 -4.8380 4.0587 23 1 8.2932 -6.9716 2.9809 24 1 8.4655 -4.9167 1.7048 25 6 0.7830 -6.2228 3.1036 26 6 -0.7602 -6.0876 3.0042 27 6 -1.0870 -4.8406 3.8517 28 6 0.1939 -3.9888 3.8922 29 1 -0.3632 0.0052 1.0276 30 1 -0.3632 0.8875 -0.5183 31 1 -0.3634 -0.8925 -0.5094 32 1 5.6671 1.0652 0.4192 33 1 3.5870 3.4102 0.3253 34 1 5.3756 3.5633 0.7484 35 1 5.9950 2.6482 -1.5355 36 1 4.2070 2.4946 -1.9598 37 1 0.8668 -2.6019 -0.4999 38 1 2.5670 -3.1288 -0.4976 39 1 1.0206 -4.8336 0.9594 40 1 2.8699 -3.5547 3.8470 41 1 2.6314 -5.1068 4.6853 42 1 3.3685 -5.7067 2.0511 43 1 6.2208 -6.7850 0.6987 44 1 1.1805 -6.7759 2.2525 45 1 1.0697 -6.6974 4.0420 46 1 -1.2477 -6.9695 3.4195 47 1 -1.0636 -5.9350 1.9685 48 1 -1.3692 -5.1388 4.8614 49 1 -1.8964 -4.2761 3.3887 50 1 0.5332 -3.8736 4.9217 51 1 0.0060 -3.0108 3.4489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481912682.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:16 Heat of formation + Delta-G solvation = 62.316704 kcal Electronic energy + Delta-G solvation = -31786.817437 eV Core-core repulsion = 27722.965663 eV Total energy + Delta-G solvation = -4063.851774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.24144 -41.32611 -38.87276 -38.14514 -36.18087 -34.90728 -34.46939 -33.63879 -32.89621 -30.39895 -29.66491 -29.21498 -28.12486 -26.28051 -24.74471 -24.01325 -23.35688 -22.94832 -21.47162 -21.21480 -20.77358 -20.37773 -19.13591 -18.36607 -18.02146 -17.28453 -16.85768 -16.49303 -16.43491 -16.29496 -15.98566 -15.79992 -15.51754 -15.06969 -14.92358 -14.65849 -14.47031 -14.32111 -14.17908 -14.01631 -13.73095 -13.24943 -13.14757 -13.08561 -12.84607 -12.72001 -12.46856 -12.41196 -12.34222 -12.15904 -12.06809 -11.89218 -11.87293 -11.75577 -11.64007 -11.50245 -11.25723 -11.06918 -11.00708 -10.85416 -10.59178 -10.14999 -9.90266 -8.93318 -7.94876 -5.19575 0.45307 1.32376 1.42274 1.44982 1.53246 1.62541 1.73647 2.33028 2.55404 2.84157 2.96477 3.37495 3.38376 3.47306 3.54609 3.73048 3.84026 3.85427 3.99031 4.00979 4.06615 4.20629 4.22669 4.30121 4.43226 4.44873 4.57282 4.58947 4.60641 4.63299 4.70325 4.71889 4.85558 4.86759 4.91298 4.95536 5.08210 5.10770 5.15656 5.19670 5.20161 5.31376 5.33717 5.37127 5.38123 5.47023 5.55382 5.75613 5.80439 6.28808 6.66717 7.09488 7.36303 7.37477 8.09962 8.40364 9.28006 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007279 B = 0.004329 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3845.956824 B = 6466.299450 C = 9550.196901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.372 5.372 3 N -0.335 5.335 4 C 0.240 3.760 5 C -0.106 4.106 6 C -0.145 4.145 7 C -0.138 4.138 8 N -0.573 5.573 9 C 0.298 3.702 10 C -0.061 4.061 11 C 0.527 3.473 12 O -0.569 6.569 13 N -0.693 5.693 14 C 0.175 3.825 15 C 0.147 3.853 16 N -0.724 5.724 17 C -0.242 4.242 18 H 0.055 0.945 19 C -0.062 4.062 20 N -0.957 5.957 21 Si 0.960 3.040 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.294 1.294 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.113 4.113 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.169 0.831 38 H 0.129 0.871 39 H 0.413 0.587 40 H 0.007 0.993 41 H 0.015 0.985 42 H 0.379 0.621 43 H 0.251 0.749 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.262 9.328 -5.846 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.162 5.162 3 N -0.164 5.164 4 C -0.041 4.041 5 C -0.127 4.127 6 C -0.183 4.183 7 C -0.176 4.176 8 N -0.301 5.301 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.312 3.688 12 O -0.448 6.448 13 N -0.345 5.345 14 C 0.088 3.912 15 C 0.019 3.981 16 N -0.367 5.367 17 C -0.374 4.374 18 H 0.073 0.927 19 C -0.255 4.255 20 N -0.608 5.608 21 Si 0.790 3.210 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.221 1.221 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.151 4.151 28 C -0.157 4.157 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.186 0.814 38 H 0.147 0.853 39 H 0.250 0.750 40 H 0.025 0.975 41 H 0.033 0.967 42 H 0.213 0.787 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.096 0.904 50 H 0.074 0.926 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.003 10.449 -5.064 21.423 hybrid contribution 1.321 -0.601 0.007 1.451 sum -16.682 9.848 -5.057 20.021 Atomic orbital electron populations 1.22380 0.71216 1.07151 1.04772 1.50360 1.09101 1.02812 1.53937 1.77738 1.01361 1.08586 1.28744 1.23535 0.93470 0.89185 0.97925 1.20218 0.92676 0.91091 1.08709 1.23088 1.03932 0.91536 0.99708 1.23095 1.04233 0.99312 0.90983 1.70274 1.21794 1.12026 1.25983 1.23687 0.85750 0.92650 0.95764 1.20330 1.07231 0.86611 0.96158 1.20242 0.75713 0.82373 0.90433 1.90708 1.50496 1.55889 1.47671 1.45573 1.67388 1.12489 1.09028 1.21248 0.93071 0.95188 0.81658 1.21085 0.88946 0.95037 0.92982 1.42178 1.01530 1.64711 1.28319 1.19462 0.85064 1.27220 1.05683 0.92714 1.25295 1.01214 1.01347 0.97643 1.69745 1.33217 1.41834 1.15997 0.85270 0.81490 0.77088 0.77130 1.20317 1.21180 1.22118 1.22759 0.97119 0.92719 1.02888 1.22421 0.93186 0.98156 1.01130 1.22097 0.96008 0.96015 1.00952 1.22360 0.95113 0.99080 0.99123 0.90193 0.87435 0.85515 0.86147 0.88714 0.85726 0.85488 0.89013 0.81399 0.85322 0.74976 0.97453 0.96736 0.78726 0.93967 0.90982 0.90901 0.89925 0.89899 0.91102 0.90434 0.92567 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 11.33 127.77 1.45 2.82 16 2 N -0.37 -10.79 4.04 -359.87 -1.45 -12.24 16 3 N -0.33 -11.33 12.24 -51.33 -0.63 -11.96 16 4 C 0.24 8.82 7.69 138.64 1.07 9.88 16 5 C -0.11 -3.16 6.33 -11.54 -0.07 -3.23 16 6 C -0.14 -3.21 10.14 30.62 0.31 -2.90 16 7 C -0.14 -2.97 10.24 30.62 0.31 -2.65 16 8 N -0.57 -23.58 11.19 -179.72 -2.01 -25.59 16 9 C 0.30 9.98 6.48 138.22 0.90 10.88 16 10 C -0.06 -1.59 6.03 29.10 0.18 -1.42 16 11 C 0.53 17.24 7.06 87.66 0.62 17.86 16 12 O -0.57 -24.23 13.00 -3.03 -0.04 -24.27 16 13 N -0.69 -19.38 4.54 -418.08 -1.90 -21.28 16 14 C 0.17 5.44 0.39 4.68 0.00 5.45 16 15 C 0.15 6.52 4.72 86.38 0.41 6.93 16 16 N -0.72 -37.75 5.30 -343.44 -1.82 -39.57 16 17 C -0.24 -14.45 9.99 84.03 0.84 -13.61 16 18 H 0.05 3.33 7.83 -2.91 -0.02 3.31 16 19 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 20 N -0.96 -58.30 13.06 21.65 0.28 -58.02 16 21 Si 0.96 48.79 29.55 68.60 2.03 50.82 16 22 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 25 C -0.12 -3.00 5.67 32.01 0.18 -2.82 16 26 C -0.11 -1.90 6.80 31.79 0.22 -1.69 16 27 C -0.11 -2.08 6.80 31.32 0.21 -1.86 16 28 C -0.12 -3.19 5.68 31.32 0.18 -3.01 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.13 1.03 7.11 -2.39 -0.02 1.02 16 32 H 0.12 3.71 8.14 -2.39 -0.02 3.69 16 33 H 0.09 2.24 7.87 -2.39 -0.02 2.22 16 34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.09 2.02 8.14 -2.38 -0.02 2.01 16 37 H 0.17 2.14 7.13 -2.39 -0.02 2.12 16 38 H 0.13 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.41 8.68 8.50 -92.71 -0.79 7.89 16 40 H 0.01 0.39 6.49 -2.39 -0.02 0.37 16 41 H 0.01 0.66 8.02 -2.39 -0.02 0.64 16 42 H 0.38 19.81 7.27 -92.70 -0.67 19.13 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.07 1.93 8.10 -2.38 -0.02 1.91 16 45 H 0.07 2.04 7.97 -2.39 -0.02 2.02 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 50 H 0.06 1.66 7.84 -2.39 -0.02 1.64 16 51 H 0.06 1.78 6.63 -2.38 -0.02 1.76 16 Total: -1.00 -87.84 413.70 1.21 -86.63 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.51 Total: 38.09 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 7.26 Total: 17.39 kcal Atomic # 7 Polarization: -161.14 SS G_CDS: -7.53 Total: -168.66 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.03 Total: 50.82 kcal Total: -87.84 1.21 -86.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481912682.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.944 kcal (2) G-P(sol) polarization free energy of solvation -87.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds