Wall clock time and date at job start Wed Apr 1 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28595 * 124.62001 * 2 1 4 4 C 1.31379 * 108.72036 * 180.02562 * 3 2 1 5 5 C 1.39674 * 105.89922 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.04845 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46938 * 124.99850 * 6 5 4 8 8 C 1.50699 * 109.47220 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99672 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00008 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00155 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.67029 * 35.50339 * 11 10 8 13 13 C 1.53334 * 109.67540 * 275.00372 * 11 10 8 14 14 C 1.52823 * 108.09116 * 176.14471 * 13 11 10 15 15 C 1.50727 * 111.74473 * 58.91826 * 14 13 11 16 16 H 1.09004 * 109.26568 * 186.23108 * 15 14 13 17 17 C 1.53904 * 113.02838 * 65.12457 * 15 14 13 18 18 N 1.47823 * 104.06076 * 198.52339 * 17 15 14 19 19 C 1.36937 * 125.64869 * 203.39164 * 18 17 15 20 20 H 1.08000 * 120.00188 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99752 * 359.94825 * 19 18 17 22 22 N 1.31618 * 120.00719 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99791 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47477 * 90.00444 * 23 21 19 25 25 H 1.48505 * 109.47368 * 210.00129 * 23 21 19 26 26 H 1.48499 * 109.47555 * 330.00009 * 23 21 19 27 27 C 1.47174 * 108.70272 * 23.35021 * 18 17 15 28 28 C 1.53999 * 113.94436 * 308.68456 * 15 14 13 29 29 H 1.09002 * 112.20572 * 280.65795 * 28 15 14 30 30 C 1.52588 * 109.67775 * 156.05094 * 11 10 8 31 31 N 1.28606 * 124.61820 * 179.70717 * 2 1 3 32 32 H 1.09002 * 109.47391 * 90.01812 * 1 2 3 33 33 H 1.09001 * 109.46813 * 330.01868 * 1 2 3 34 34 H 1.09004 * 109.47041 * 210.01995 * 1 2 3 35 35 H 1.08002 * 127.04831 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47206 * 245.00091 * 6 5 4 37 37 H 1.09004 * 109.47321 * 5.00615 * 6 5 4 38 38 H 1.08996 * 109.47368 * 300.00141 * 7 6 5 39 39 H 1.09000 * 109.46949 * 60.00067 * 7 6 5 40 40 H 0.97006 * 120.00243 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.73549 * 295.79669 * 13 11 10 42 42 H 1.09002 * 109.73637 * 56.44500 * 13 11 10 43 43 H 1.09006 * 109.01804 * 179.49899 * 14 13 11 44 44 H 1.08997 * 109.02719 * 298.33043 * 14 13 11 45 45 H 1.08997 * 110.51072 * 317.16967 * 17 15 14 46 46 H 1.08998 * 110.51515 * 79.88072 * 17 15 14 47 47 H 0.96991 * 120.00915 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.95988 * 241.58308 * 27 18 17 49 49 H 1.09000 * 109.96340 * 120.33732 * 27 18 17 50 50 H 1.08998 * 109.15907 * 302.48923 * 30 11 10 51 51 H 1.08997 * 109.16045 * 61.67986 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 -0.0006 5 6 3.4591 -0.6984 -0.0015 6 6 4.6619 -1.6064 -0.0019 7 6 4.5702 -2.5748 1.1791 8 6 5.7726 -3.4832 1.1784 9 8 6.6197 -3.3671 0.3183 10 7 5.9065 -4.4245 2.1336 11 6 7.0758 -5.3073 2.1333 12 1 7.9517 -4.7559 1.7918 13 6 6.8219 -6.5000 1.2037 14 6 8.0954 -7.3433 1.1552 15 6 8.4927 -7.8342 2.5238 16 1 9.4592 -8.3342 2.4600 17 6 7.4719 -8.8121 3.1324 18 7 7.7846 -8.8045 4.5772 19 6 7.4847 -9.8040 5.4639 20 1 7.7571 -9.7028 6.5040 21 6 6.8301 -10.9470 5.0259 22 7 6.4980 -11.0705 3.7583 23 14 6.4217 -12.3108 6.2353 24 1 5.0792 -12.0672 6.8213 25 1 6.4235 -13.6166 5.5281 26 1 7.4378 -12.3330 7.3180 27 6 8.4723 -7.5452 4.9046 28 6 8.5655 -6.7244 3.5890 29 1 9.4896 -6.1501 3.5230 30 6 7.3191 -5.8382 3.5430 31 7 2.1956 -1.0584 0.0054 32 1 -0.3634 -0.0003 -1.0277 33 1 -0.3633 0.8902 0.5136 34 1 -0.3633 -0.8898 0.5142 35 1 4.3211 1.3491 -0.0003 36 1 4.6904 -2.1712 -0.9336 37 1 5.5687 -1.0083 0.0884 38 1 4.5416 -2.0099 2.1108 39 1 3.6634 -3.1729 1.0889 40 1 5.2288 -4.5176 2.8213 41 1 5.9979 -7.0994 1.5908 42 1 6.5782 -6.1419 0.2035 43 1 7.9284 -8.2017 0.5044 44 1 8.9054 -6.7404 0.7449 45 1 6.4552 -8.4593 2.9597 46 1 7.6060 -9.8112 2.7179 47 1 6.0410 -11.8693 3.4521 48 1 9.4724 -7.7552 5.2838 49 1 7.9003 -6.9914 5.6490 50 1 7.4525 -4.9975 4.2238 51 1 6.4541 -6.4206 3.8602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485655337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:24 Heat of formation + Delta-G solvation = 83.780126 kcal Electronic energy + Delta-G solvation = -30309.908266 eV Core-core repulsion = 26246.987216 eV Total energy + Delta-G solvation = -4062.921050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.85102 -40.12444 -38.86309 -35.62222 -35.01665 -33.46173 -33.22216 -32.03411 -31.80275 -30.35571 -28.91539 -27.91556 -26.15282 -25.11841 -24.68733 -22.66151 -22.12672 -21.67483 -20.86677 -20.31336 -19.69391 -18.20576 -17.65771 -17.19146 -16.85586 -16.74269 -15.97531 -15.65050 -15.21785 -15.11199 -14.60218 -14.29262 -14.02515 -13.84561 -13.73941 -13.46316 -13.35205 -13.22138 -13.05846 -12.38261 -12.34233 -12.32165 -12.00921 -11.87572 -11.86532 -11.29416 -11.23034 -11.09970 -11.07738 -10.99599 -10.85456 -10.60313 -10.53582 -10.49462 -10.03141 -9.97679 -9.73384 -9.69367 -9.52386 -9.36997 -9.29457 -8.82059 -8.59840 -6.78741 -5.63489 -3.03829 1.49147 2.00144 2.10562 2.68295 3.22929 3.40043 3.45314 3.47198 3.75852 4.40623 4.50736 4.56551 4.57523 4.69659 4.83474 4.88589 4.98671 5.02635 5.08630 5.15252 5.32236 5.38987 5.49596 5.50804 5.53378 5.63731 5.68173 5.75633 5.81406 5.86156 5.88856 5.92534 5.96108 5.99413 6.11763 6.34460 6.36187 6.41330 6.50061 6.54197 6.58320 6.66943 6.74209 6.78701 6.92979 7.06525 7.58075 7.59504 7.66689 7.90550 8.01553 8.27904 8.37964 9.24395 9.85606 10.51818 11.40834 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.001901 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.833779 B =14723.245667 C =15637.630579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.161 5.161 3 N -0.292 5.292 4 C -0.022 4.022 5 C 0.006 3.994 6 C -0.012 4.012 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.147 3.853 12 H 0.084 0.916 13 C -0.125 4.125 14 C -0.095 4.095 15 C -0.114 4.114 16 H 0.063 0.937 17 C 0.165 3.835 18 N -0.606 5.606 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.138 3.862 28 C -0.089 4.089 29 H 0.075 0.925 30 C -0.113 4.113 31 N -0.285 5.285 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.198 0.802 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.399 0.601 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.015 0.985 46 H 0.100 0.900 47 H 0.251 0.749 48 H 0.019 0.981 49 H 0.022 0.978 50 H 0.057 0.943 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 22.397 -7.603 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.062 5.062 3 N -0.134 5.134 4 C -0.204 4.204 5 C -0.157 4.157 6 C -0.052 4.052 7 C -0.176 4.176 8 C 0.300 3.700 9 O -0.422 6.422 10 N -0.374 5.374 11 C 0.043 3.957 12 H 0.102 0.898 13 C -0.163 4.163 14 C -0.134 4.134 15 C -0.134 4.134 16 H 0.081 0.919 17 C 0.041 3.959 18 N -0.332 5.332 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.570 5.570 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.012 3.988 28 C -0.109 4.109 29 H 0.093 0.907 30 C -0.151 4.151 31 N -0.128 5.128 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.215 0.785 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.233 0.767 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.118 0.882 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.040 0.960 50 H 0.076 0.924 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.698 22.277 -8.189 25.278 hybrid contribution 0.167 -0.725 1.075 1.308 sum -8.531 21.552 -7.114 24.246 Atomic orbital electron populations 1.22119 0.70280 1.05852 1.04924 1.47916 1.08873 0.99373 1.50045 1.74039 1.04033 1.16168 1.19130 1.24697 0.94440 0.94750 1.06549 1.23250 0.92620 0.94229 1.05606 1.19623 0.91625 0.94808 0.99148 1.21620 0.97726 0.97776 1.00527 1.20556 0.87485 0.80699 0.81252 1.90697 1.43383 1.71075 1.37033 1.46180 1.25672 1.35091 1.30446 1.21015 0.87851 0.90106 0.96694 0.89766 1.21926 0.99220 0.96103 0.99066 1.20762 0.96510 0.98933 0.97179 1.21762 1.01576 0.96872 0.93172 0.91870 1.21786 0.92651 0.98445 0.83047 1.44619 1.67552 1.15497 1.05545 1.19072 1.30934 0.94711 0.90206 0.90648 1.24771 1.01115 0.98423 0.96456 1.69821 1.45966 1.28194 1.13052 0.86107 0.78124 0.81620 0.79851 1.21743 1.21709 1.20772 1.21604 0.95379 0.87976 0.93840 1.22048 0.96218 0.95519 0.97078 0.90710 1.21752 0.99991 0.98902 0.94495 1.74021 1.03647 1.15563 1.19571 0.89306 0.88009 0.87860 0.78528 0.89150 0.88744 0.88959 0.88347 0.76690 0.91043 0.92202 0.91814 0.92873 0.96719 0.88247 0.93826 0.96301 0.96002 0.92380 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.47 11.57 59.85 0.69 1.16 16 2 N -0.16 -1.48 4.35 -16.64 -0.07 -1.56 16 3 N -0.29 -2.92 12.05 30.67 0.37 -2.55 16 4 C -0.02 -0.20 12.15 -17.21 -0.21 -0.40 16 5 C 0.01 0.06 6.61 -82.25 -0.54 -0.49 16 6 C -0.01 -0.11 5.10 -27.88 -0.14 -0.25 16 7 C -0.14 -1.21 5.67 -27.88 -0.16 -1.37 16 8 C 0.51 6.19 7.80 -10.99 -0.09 6.10 16 9 O -0.54 -8.41 15.66 5.56 0.09 -8.32 16 10 N -0.72 -8.55 5.10 -53.84 -0.27 -8.82 16 11 C 0.15 2.07 2.42 -67.97 -0.16 1.90 16 12 H 0.08 1.27 7.60 -51.93 -0.39 0.87 16 13 C -0.12 -1.92 5.40 -26.65 -0.14 -2.06 16 14 C -0.10 -1.53 5.37 -27.96 -0.15 -1.68 16 15 C -0.11 -2.12 2.81 -90.77 -0.26 -2.38 16 16 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 17 C 0.17 3.89 4.79 -2.85 -0.01 3.87 16 18 N -0.61 -15.25 3.41 -169.61 -0.58 -15.83 16 19 C -0.22 -6.11 10.28 -15.06 -0.15 -6.27 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -26.68 10.11 55.49 0.56 -26.12 16 23 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.14 2.83 6.54 -2.43 -0.02 2.82 16 28 C -0.09 -1.51 3.61 -88.85 -0.32 -1.83 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 C -0.11 -1.70 4.10 -26.94 -0.11 -1.81 16 31 N -0.29 -3.00 12.04 33.71 0.41 -2.59 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.09 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.40 3.92 8.60 -40.82 -0.35 3.56 16 41 H 0.07 1.21 6.80 -51.93 -0.35 0.85 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.01 0.37 6.15 -51.93 -0.32 0.05 16 46 H 0.10 2.70 5.96 -51.93 -0.31 2.39 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.08 1.32 7.16 -51.93 -0.37 0.94 16 LS Contribution 401.40 15.07 6.05 6.05 Total: -1.00 -34.54 401.40 -8.73 -43.27 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.38 Total: 2.60 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.87 Total: -3.13 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.41 Total: -57.48 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.32 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.54 -8.73 -43.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485655337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.052 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds