Wall clock time and date at job start Wed Apr 1 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28595 * 124.62001 * 2 1 4 4 C 1.31379 * 108.72036 * 180.02562 * 3 2 1 5 5 C 1.39674 * 105.89922 * 0.02562 * 4 3 2 6 6 C 1.50703 * 127.04845 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.46938 * 124.99850 * 6 5 4 8 8 C 1.50699 * 109.47220 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99672 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00008 * 180.02562 * 8 7 6 11 11 C 1.46505 * 120.00155 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.67029 * 35.50339 * 11 10 8 13 13 C 1.53334 * 109.67540 * 275.00372 * 11 10 8 14 14 C 1.52823 * 108.09116 * 176.14471 * 13 11 10 15 15 C 1.50727 * 111.74473 * 58.91826 * 14 13 11 16 16 H 1.09004 * 109.26568 * 186.23108 * 15 14 13 17 17 C 1.53904 * 113.02838 * 65.12457 * 15 14 13 18 18 N 1.47823 * 104.06076 * 198.52339 * 17 15 14 19 19 C 1.36937 * 125.64869 * 203.39164 * 18 17 15 20 20 H 1.08000 * 120.00188 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99752 * 359.94825 * 19 18 17 22 22 N 1.31618 * 120.00719 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99791 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47477 * 90.00444 * 23 21 19 25 25 H 1.48505 * 109.47368 * 210.00129 * 23 21 19 26 26 H 1.48499 * 109.47555 * 330.00009 * 23 21 19 27 27 C 1.47174 * 108.70272 * 23.35021 * 18 17 15 28 28 C 1.53999 * 113.94436 * 308.68456 * 15 14 13 29 29 H 1.09002 * 112.20572 * 280.65795 * 28 15 14 30 30 C 1.52588 * 109.67775 * 156.05094 * 11 10 8 31 31 N 1.28606 * 124.61820 * 179.70717 * 2 1 3 32 32 H 1.09002 * 109.47391 * 90.01812 * 1 2 3 33 33 H 1.09001 * 109.46813 * 330.01868 * 1 2 3 34 34 H 1.09004 * 109.47041 * 210.01995 * 1 2 3 35 35 H 1.08002 * 127.04831 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47206 * 245.00091 * 6 5 4 37 37 H 1.09004 * 109.47321 * 5.00615 * 6 5 4 38 38 H 1.08996 * 109.47368 * 300.00141 * 7 6 5 39 39 H 1.09000 * 109.46949 * 60.00067 * 7 6 5 40 40 H 0.97006 * 120.00243 * 0.02562 * 10 8 7 41 41 H 1.08996 * 109.73549 * 295.79669 * 13 11 10 42 42 H 1.09002 * 109.73637 * 56.44500 * 13 11 10 43 43 H 1.09006 * 109.01804 * 179.49899 * 14 13 11 44 44 H 1.08997 * 109.02719 * 298.33043 * 14 13 11 45 45 H 1.08997 * 110.51072 * 317.16967 * 17 15 14 46 46 H 1.08998 * 110.51515 * 79.88072 * 17 15 14 47 47 H 0.96991 * 120.00915 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.95988 * 241.58308 * 27 18 17 49 49 H 1.09000 * 109.96340 * 120.33732 * 27 18 17 50 50 H 1.08998 * 109.15907 * 302.48923 * 30 11 10 51 51 H 1.08997 * 109.16045 * 61.67986 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6983 -0.0006 5 6 3.4591 -0.6984 -0.0015 6 6 4.6619 -1.6064 -0.0019 7 6 4.5702 -2.5748 1.1791 8 6 5.7726 -3.4832 1.1784 9 8 6.6197 -3.3671 0.3183 10 7 5.9065 -4.4245 2.1336 11 6 7.0758 -5.3073 2.1333 12 1 7.9517 -4.7559 1.7918 13 6 6.8219 -6.5000 1.2037 14 6 8.0954 -7.3433 1.1552 15 6 8.4927 -7.8342 2.5238 16 1 9.4592 -8.3342 2.4600 17 6 7.4719 -8.8121 3.1324 18 7 7.7846 -8.8045 4.5772 19 6 7.4847 -9.8040 5.4639 20 1 7.7571 -9.7028 6.5040 21 6 6.8301 -10.9470 5.0259 22 7 6.4980 -11.0705 3.7583 23 14 6.4217 -12.3108 6.2353 24 1 5.0792 -12.0672 6.8213 25 1 6.4235 -13.6166 5.5281 26 1 7.4378 -12.3330 7.3180 27 6 8.4723 -7.5452 4.9046 28 6 8.5655 -6.7244 3.5890 29 1 9.4896 -6.1501 3.5230 30 6 7.3191 -5.8382 3.5430 31 7 2.1956 -1.0584 0.0054 32 1 -0.3634 -0.0003 -1.0277 33 1 -0.3633 0.8902 0.5136 34 1 -0.3633 -0.8898 0.5142 35 1 4.3211 1.3491 -0.0003 36 1 4.6904 -2.1712 -0.9336 37 1 5.5687 -1.0083 0.0884 38 1 4.5416 -2.0099 2.1108 39 1 3.6634 -3.1729 1.0889 40 1 5.2288 -4.5176 2.8213 41 1 5.9979 -7.0994 1.5908 42 1 6.5782 -6.1419 0.2035 43 1 7.9284 -8.2017 0.5044 44 1 8.9054 -6.7404 0.7449 45 1 6.4552 -8.4593 2.9597 46 1 7.6060 -9.8112 2.7179 47 1 6.0410 -11.8693 3.4521 48 1 9.4724 -7.7552 5.2838 49 1 7.9003 -6.9914 5.6490 50 1 7.4525 -4.9975 4.2238 51 1 6.4541 -6.4206 3.8602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485655337.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:23 Heat of formation + Delta-G solvation = 60.817965 kcal Electronic energy + Delta-G solvation = -30310.903980 eV Core-core repulsion = 26246.987216 eV Total energy + Delta-G solvation = -4063.916764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.49938 -41.32283 -40.15543 -36.97097 -35.78260 -34.94926 -33.88359 -33.59375 -32.65477 -31.77260 -30.45915 -28.61234 -27.66019 -26.80690 -25.66630 -23.62642 -23.29323 -22.83437 -22.01505 -21.38382 -20.95890 -19.58127 -18.83501 -18.34541 -17.87126 -17.62036 -17.16595 -16.75797 -16.54414 -16.34646 -15.71318 -15.65131 -15.19193 -15.13944 -14.71536 -14.49825 -14.39695 -14.02889 -13.87690 -13.80674 -13.60467 -13.54617 -13.32099 -13.03076 -13.00694 -12.77514 -12.64287 -12.60349 -12.52498 -12.17596 -11.98587 -11.92352 -11.83973 -11.77194 -11.59896 -11.30634 -11.23465 -11.12298 -10.91886 -10.70586 -10.63605 -10.04364 -9.92039 -8.81807 -7.74797 -5.17254 0.82628 1.43851 1.46261 1.47685 1.53265 1.56440 1.73592 2.27723 2.51052 3.17872 3.35076 3.64279 3.70375 3.76550 3.85501 3.88658 4.03046 4.19484 4.21905 4.24057 4.30573 4.31917 4.37485 4.41248 4.49075 4.56076 4.58322 4.60243 4.65894 4.71610 4.75904 4.87322 4.89740 4.98905 5.05623 5.09028 5.11845 5.18977 5.21351 5.29231 5.33072 5.35711 5.42111 5.51653 5.63624 5.63920 5.78439 5.78895 5.91111 6.34079 6.65212 7.14220 7.33939 7.35692 7.82776 8.47693 9.27286 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.001901 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.833779 B =14723.245667 C =15637.630579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.164 5.164 3 N -0.311 5.311 4 C -0.025 4.025 5 C -0.004 4.004 6 C -0.006 4.006 7 C -0.124 4.124 8 C 0.516 3.484 9 O -0.578 6.578 10 N -0.719 5.719 11 C 0.158 3.842 12 H 0.086 0.914 13 C -0.118 4.118 14 C -0.091 4.091 15 C -0.102 4.102 16 H 0.056 0.944 17 C 0.174 3.826 18 N -0.628 5.628 19 C -0.235 4.235 20 H 0.079 0.921 21 C -0.069 4.069 22 N -0.948 5.948 23 Si 0.977 3.023 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.270 1.270 27 C 0.131 3.869 28 C -0.076 4.076 29 H 0.108 0.892 30 C -0.103 4.103 31 N -0.307 5.307 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.224 0.776 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.410 0.590 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.077 0.923 45 H -0.005 1.005 46 H 0.058 0.942 47 H 0.245 0.755 48 H 0.020 0.980 49 H 0.029 0.971 50 H 0.083 0.917 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 24.583 -6.993 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.066 5.066 3 N -0.153 5.153 4 C -0.207 4.207 5 C -0.166 4.166 6 C -0.046 4.046 7 C -0.165 4.165 8 C 0.304 3.696 9 O -0.457 6.457 10 N -0.369 5.369 11 C 0.053 3.947 12 H 0.104 0.896 13 C -0.157 4.157 14 C -0.129 4.129 15 C -0.122 4.122 16 H 0.074 0.926 17 C 0.049 3.951 18 N -0.354 5.354 19 C -0.364 4.364 20 H 0.096 0.904 21 C -0.262 4.262 22 N -0.598 5.598 23 Si 0.805 3.195 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.195 1.195 27 C 0.006 3.994 28 C -0.096 4.096 29 H 0.126 0.874 30 C -0.141 4.141 31 N -0.150 5.150 32 H 0.120 0.880 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.240 0.760 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.246 0.754 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.012 0.988 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.038 0.962 49 H 0.047 0.953 50 H 0.102 0.898 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.574 24.492 -7.551 27.026 hybrid contribution 0.093 -1.396 0.889 1.658 sum -8.482 23.096 -6.663 25.490 Atomic orbital electron populations 1.22509 0.68220 1.07251 1.06275 1.48380 1.10094 0.98830 1.49287 1.74024 1.04674 1.16756 1.19864 1.25180 0.94955 0.94865 1.05694 1.23344 0.92502 0.94713 1.06019 1.19558 0.91903 0.94696 0.98456 1.21562 0.96057 0.97299 1.01547 1.21026 0.87753 0.80502 0.80342 1.90686 1.44808 1.72003 1.38251 1.46091 1.25338 1.34600 1.30889 1.20757 0.88780 0.89680 0.95437 0.89604 1.21837 0.98074 0.96372 0.99421 1.20721 0.97643 0.99139 0.95434 1.21601 0.99319 0.96449 0.94814 0.92595 1.21484 0.93136 0.97549 0.82896 1.44924 1.67827 1.16746 1.05928 1.19442 1.30503 0.95582 0.90906 0.90360 1.25595 1.01676 1.00759 0.98134 1.70091 1.46707 1.28363 1.14627 0.85097 0.77992 0.78399 0.77963 1.21422 1.22188 1.19542 1.21813 0.94773 0.86755 0.96018 1.22068 0.98661 0.94987 0.93841 0.87409 1.21616 0.97935 0.98936 0.95633 1.73978 1.04303 1.16479 1.20235 0.87978 0.86399 0.86757 0.75959 0.90493 0.87808 0.86919 0.88029 0.75390 0.93178 0.92111 0.92606 0.90471 0.98754 0.92386 0.94557 0.96171 0.95332 0.89831 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.57 127.77 1.48 2.17 16 2 N -0.16 -2.81 4.35 -206.55 -0.90 -3.71 16 3 N -0.31 -5.80 12.05 -56.87 -0.69 -6.49 16 4 C -0.03 -0.41 12.15 85.11 1.03 0.63 16 5 C 0.00 -0.06 6.61 42.98 0.28 0.22 16 6 C -0.01 -0.10 5.10 29.85 0.15 0.05 16 7 C -0.12 -1.96 5.67 29.85 0.17 -1.79 16 8 C 0.52 11.45 7.80 87.66 0.68 12.13 16 9 O -0.58 -16.91 15.66 -3.03 -0.05 -16.96 16 10 N -0.72 -15.55 5.10 -442.65 -2.26 -17.81 16 11 C 0.16 4.12 2.42 44.97 0.11 4.23 16 12 H 0.09 2.31 7.60 -2.39 -0.02 2.30 16 13 C -0.12 -3.57 5.40 30.65 0.17 -3.40 16 14 C -0.09 -2.85 5.37 29.80 0.16 -2.69 16 15 C -0.10 -3.76 2.81 -10.89 -0.03 -3.79 16 16 H 0.06 2.13 8.14 -2.38 -0.02 2.12 16 17 C 0.17 8.46 4.79 86.43 0.41 8.88 16 18 N -0.63 -32.10 3.41 -690.53 -2.35 -34.45 16 19 C -0.24 -13.22 10.28 84.03 0.86 -12.35 16 20 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 21 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 22 N -0.95 -56.90 10.11 21.65 0.22 -56.68 16 23 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 27 C 0.13 5.26 6.54 87.06 0.57 5.83 16 28 C -0.08 -2.43 3.61 -9.65 -0.03 -2.46 16 29 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 30 C -0.10 -2.87 4.10 30.46 0.12 -2.75 16 31 N -0.31 -6.09 12.04 -47.25 -0.57 -6.66 16 32 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.22 2.00 8.06 -2.91 -0.02 1.97 16 36 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 37 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 38 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.41 7.21 8.60 -92.70 -0.80 6.41 16 41 H 0.05 1.72 6.80 -2.39 -0.02 1.71 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H -0.01 -0.28 6.15 -2.39 -0.01 -0.30 16 46 H 0.06 3.31 5.96 -2.39 -0.01 3.30 16 47 H 0.24 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.03 1.11 7.74 -2.39 -0.02 1.09 16 50 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.05 1.70 7.16 -2.39 -0.02 1.69 16 Total: -1.00 -76.33 401.40 2.18 -74.15 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.14 Total: 19.18 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 6.61 Total: 1.40 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -6.54 Total: -125.80 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.05 Total: -16.96 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -76.33 2.18 -74.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485655337.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.972 kcal (2) G-P(sol) polarization free energy of solvation -76.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds