Wall clock time and date at job start Wed Apr 1 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35309 * 125.87027 * 2 1 4 4 C 1.35353 * 106.17498 * 179.97438 * 3 2 1 5 5 C 1.50706 * 126.75076 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46816 * 124.99944 * 5 4 3 7 7 C 1.50706 * 109.47126 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99530 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00041 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99941 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.71209 * 35.59114 * 10 9 7 12 12 C 1.53299 * 109.71089 * 274.99681 * 10 9 7 13 13 C 1.52625 * 108.50735 * 176.52783 * 12 10 9 14 14 C 1.52984 * 110.93536 * 62.20207 * 13 12 10 15 15 H 1.09006 * 112.42518 * 73.38735 * 14 13 12 16 16 C 1.55839 * 106.37359 * 198.11347 * 14 13 12 17 17 N 1.47625 * 104.46611 * 77.05797 * 16 14 13 18 18 C 1.36937 * 125.72463 * 204.86773 * 17 16 14 19 19 H 1.07994 * 120.00286 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00055 * 0.02562 * 18 17 16 21 21 N 1.31623 * 120.00231 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00209 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47002 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47248 * 120.00163 * 22 20 18 25 25 H 1.48499 * 109.46783 * 239.99785 * 22 20 18 26 26 C 1.47426 * 108.55067 * 24.86999 * 17 16 14 27 27 C 1.53381 * 106.51294 * 359.32817 * 26 17 16 28 28 H 1.09005 * 108.95430 * 91.97347 * 27 26 17 29 29 C 1.50892 * 113.07290 * 212.46937 * 27 26 17 30 30 N 1.33775 * 106.49785 * 359.97438 * 4 3 2 31 31 N 1.28637 * 108.88137 * 0.02562 * 30 4 3 32 32 H 1.08993 * 109.47544 * 270.02391 * 1 2 3 33 33 H 1.09000 * 109.47126 * 30.02572 * 1 2 3 34 34 H 1.09003 * 109.47102 * 150.02210 * 1 2 3 35 35 H 1.08002 * 126.91313 * 0.02562 * 3 2 1 36 36 H 1.08997 * 109.46870 * 244.99788 * 5 4 3 37 37 H 1.09004 * 109.46999 * 5.00398 * 5 4 3 38 38 H 1.09009 * 109.47321 * 300.00034 * 6 5 4 39 39 H 1.09003 * 109.47413 * 60.00146 * 6 5 4 40 40 H 0.97004 * 120.00396 * 359.97438 * 9 7 6 41 41 H 1.09002 * 109.63433 * 296.22941 * 12 10 9 42 42 H 1.08997 * 109.63550 * 56.62622 * 12 10 9 43 43 H 1.08997 * 109.19117 * 182.58150 * 13 12 10 44 44 H 1.09002 * 109.18110 * 301.88328 * 13 12 10 45 45 H 1.08993 * 110.43611 * 195.80347 * 16 14 13 46 46 H 1.08998 * 110.43512 * 318.31559 * 16 14 13 47 47 H 0.96998 * 120.00407 * 180.02562 * 21 20 18 48 48 H 1.08991 * 110.04920 * 240.06461 * 26 17 16 49 49 H 1.09006 * 110.08854 * 118.61181 * 26 17 16 50 50 H 1.08995 * 109.06069 * 305.29805 * 29 27 26 51 51 H 1.08995 * 109.05834 * 186.37057 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0965 0.0000 4 6 3.5322 0.6403 0.0006 5 6 4.7881 1.4733 0.0003 6 6 5.6701 1.0664 1.1824 7 6 6.9258 1.8998 1.1825 8 8 7.0983 2.7364 0.3216 9 7 7.8573 1.7147 2.1387 10 6 9.0777 2.5252 2.1391 11 1 8.8485 3.5349 1.7984 12 6 10.1202 1.8906 1.2115 13 6 11.3448 2.8002 1.1649 14 6 11.9821 2.9305 2.5496 15 1 12.5141 2.0274 2.8491 16 6 12.8897 4.1963 2.4981 17 7 11.9487 5.3292 2.6002 18 6 12.1723 6.5984 2.1373 19 1 11.4165 7.3596 2.2621 20 6 13.3704 6.9066 1.5077 21 7 14.2918 5.9790 1.3560 22 14 13.6757 8.6382 0.8769 23 1 12.4930 9.4873 1.1696 24 1 14.8719 9.2061 1.5489 25 1 13.9045 8.5975 -0.5898 26 6 10.7280 4.8648 3.2840 27 6 10.9402 3.3774 3.5927 28 1 11.3723 3.2807 4.5887 29 6 9.6621 2.5765 3.5504 30 7 3.4576 -0.6954 0.0015 31 7 2.2191 -1.0431 0.0009 32 1 -0.3634 0.0004 1.0276 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3633 -0.8902 -0.5135 35 1 1.9382 2.1281 0.0004 36 1 5.3311 1.3115 -0.9309 37 1 4.5250 2.5274 0.0891 38 1 5.1270 1.2282 2.1136 39 1 5.9332 0.0124 1.0936 40 1 7.7194 1.0453 2.8271 41 1 10.4057 0.9117 1.5969 42 1 9.7024 1.7825 0.2106 43 1 12.0754 2.3824 0.4722 44 1 11.0442 3.7880 0.8154 45 1 13.5838 4.2012 3.3385 46 1 13.4332 4.2368 1.5542 47 1 15.1292 6.1945 0.9164 48 1 9.8635 4.9915 2.6324 49 1 10.5826 5.4216 4.2098 50 1 8.9338 3.0327 4.2209 51 1 9.8673 1.5606 3.8878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485658654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:02 Heat of formation + Delta-G solvation = 50.527796 kcal Electronic energy + Delta-G solvation = -30329.775075 eV Core-core repulsion = 26265.412096 eV Total energy + Delta-G solvation = -4064.362979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.19499 -41.33557 -40.16020 -37.00945 -36.04716 -34.90182 -34.40459 -33.27926 -32.23137 -31.28446 -30.39482 -28.69498 -27.64962 -26.90954 -25.67235 -23.65370 -23.00446 -22.85855 -21.96019 -21.58857 -21.17491 -19.59802 -18.87433 -18.19611 -17.75839 -17.47498 -17.36800 -16.79557 -16.61027 -15.97434 -15.67797 -15.54323 -15.32779 -15.12077 -14.97512 -14.47038 -14.22696 -14.00344 -13.88344 -13.74211 -13.71680 -13.47413 -13.26802 -13.11497 -12.97853 -12.91523 -12.66579 -12.56883 -12.44803 -12.25366 -12.14671 -12.09765 -11.77937 -11.71023 -11.63781 -11.25641 -11.09306 -10.97311 -10.85541 -10.74390 -10.65565 -10.10575 -9.92043 -8.82855 -7.75270 -5.18404 0.66538 1.44174 1.45642 1.49084 1.55606 1.60199 1.74928 2.28318 2.49773 3.33322 3.38075 3.71163 3.73633 3.74698 3.77645 3.88618 4.05798 4.09432 4.18596 4.23014 4.27350 4.32272 4.36398 4.38003 4.44779 4.58196 4.60930 4.66206 4.68486 4.71425 4.75862 4.80350 4.84915 4.96926 5.05854 5.10366 5.15366 5.15951 5.24063 5.28321 5.28940 5.38827 5.47432 5.53033 5.55317 5.65836 5.71100 5.76779 5.89089 6.35806 6.69221 7.13787 7.40359 7.52131 7.81627 8.46191 9.26043 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.001858 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.563196 B =15065.324475 C =15796.389261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.289 5.289 3 C -0.033 4.033 4 C -0.036 4.036 5 C -0.012 4.012 6 C -0.119 4.119 7 C 0.510 3.490 8 O -0.586 6.586 9 N -0.711 5.711 10 C 0.151 3.849 11 H 0.053 0.947 12 C -0.111 4.111 13 C -0.094 4.094 14 C -0.097 4.097 15 H 0.103 0.897 16 C 0.156 3.844 17 N -0.622 5.622 18 C -0.234 4.234 19 H 0.075 0.925 20 C -0.069 4.069 21 N -0.947 5.947 22 Si 0.976 3.024 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.293 1.293 26 C 0.134 3.866 27 C -0.079 4.079 28 H 0.080 0.920 29 C -0.096 4.096 30 N -0.302 5.302 31 N -0.124 5.124 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.230 0.770 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.417 0.583 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.050 0.950 44 H 0.030 0.970 45 H -0.017 1.017 46 H 0.073 0.927 47 H 0.245 0.755 48 H 0.017 0.983 49 H 0.020 0.980 50 H 0.081 0.919 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.722 -15.103 3.075 32.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.082 5.082 3 C -0.185 4.185 4 C -0.175 4.175 5 C -0.052 4.052 6 C -0.160 4.160 7 C 0.298 3.702 8 O -0.466 6.466 9 N -0.363 5.363 10 C 0.046 3.954 11 H 0.071 0.929 12 C -0.150 4.150 13 C -0.132 4.132 14 C -0.116 4.116 15 H 0.121 0.879 16 C 0.031 3.969 17 N -0.348 5.348 18 C -0.364 4.364 19 H 0.093 0.907 20 C -0.261 4.261 21 N -0.597 5.597 22 Si 0.805 3.195 23 H -0.194 1.194 24 H -0.217 1.217 25 H -0.220 1.220 26 C 0.009 3.991 27 C -0.098 4.098 28 H 0.098 0.902 29 C -0.135 4.135 30 N -0.168 5.168 31 N -0.103 5.103 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.255 0.745 41 H 0.106 0.894 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.001 0.999 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.038 0.962 50 H 0.099 0.901 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -28.515 -15.950 2.396 32.760 hybrid contribution 0.605 2.149 -0.337 2.258 sum -27.910 -13.801 2.059 31.203 Atomic orbital electron populations 1.22737 0.69836 1.07703 1.06727 1.47652 1.11014 1.04262 1.45311 1.24014 0.89945 0.96210 1.08281 1.22178 0.96453 0.90968 1.07915 1.19510 0.89354 0.97872 0.98428 1.21522 0.92377 1.00635 1.01416 1.21211 0.85396 0.83137 0.80493 1.90731 1.79893 1.37278 1.38742 1.45929 1.19115 1.40447 1.30762 1.20774 0.83819 0.94189 0.96664 0.92858 1.21769 0.94705 0.99445 0.99085 1.21208 0.96684 0.98670 0.96670 1.22495 0.96600 0.97955 0.94569 0.87897 1.22042 0.90676 0.84604 0.99578 1.44866 1.15266 1.07392 1.67297 1.19457 1.00184 0.87059 1.29661 0.90710 1.25582 0.96527 1.01762 1.02239 1.70055 1.07542 1.32651 1.49461 0.85029 0.77608 0.79592 0.77264 1.19353 1.21721 1.21993 1.21414 0.89103 0.94386 0.94151 1.21197 0.96005 0.93247 0.99343 0.90202 1.21125 0.95630 1.01949 0.94747 1.74983 1.10342 1.13506 1.17944 1.78228 0.96651 1.13692 1.21757 0.87307 0.85255 0.87676 0.75345 0.91289 0.88568 0.86650 0.87589 0.74543 0.89436 0.93760 0.93084 0.95083 0.99945 0.90937 0.94472 0.96457 0.96235 0.90081 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.06 11.39 127.77 1.46 1.51 16 2 N -0.29 -3.51 3.74 -369.24 -1.38 -4.89 16 3 C -0.03 -0.37 11.54 83.49 0.96 0.59 16 4 C -0.04 -0.65 6.50 41.60 0.27 -0.38 16 5 C -0.01 -0.21 5.08 29.85 0.15 -0.06 16 6 C -0.12 -1.95 5.68 29.85 0.17 -1.79 16 7 C 0.51 12.13 7.80 87.66 0.68 12.82 16 8 O -0.59 -20.07 15.66 -3.02 -0.05 -20.12 16 9 N -0.71 -14.36 5.10 -442.33 -2.26 -16.62 16 10 C 0.15 4.08 2.31 45.04 0.10 4.19 16 11 H 0.05 1.93 6.22 -2.39 -0.01 1.92 16 12 C -0.11 -3.28 5.52 30.57 0.17 -3.12 16 13 C -0.09 -3.52 4.81 30.46 0.15 -3.38 16 14 C -0.10 -3.54 3.72 -9.46 -0.04 -3.58 16 15 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 16 C 0.16 7.85 5.18 87.15 0.45 8.31 16 17 N -0.62 -33.18 2.93 -690.43 -2.02 -35.21 16 18 C -0.23 -13.75 10.28 84.03 0.86 -12.88 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.07 -4.06 5.49 84.86 0.47 -3.59 16 21 N -0.95 -58.19 10.09 21.65 0.22 -57.97 16 22 Si 0.98 47.68 29.55 68.60 2.03 49.71 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 26 C 0.13 5.71 6.25 86.33 0.54 6.25 16 27 C -0.08 -2.53 2.69 -10.99 -0.03 -2.56 16 28 H 0.08 2.40 8.14 -2.38 -0.02 2.39 16 29 C -0.10 -2.21 4.83 29.85 0.14 -2.06 16 30 N -0.30 -7.06 12.40 -48.59 -0.60 -7.66 16 31 N -0.12 -2.60 13.16 37.02 0.49 -2.11 16 32 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 33 H 0.13 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.10 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.23 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 37 H 0.10 1.56 8.08 -2.39 -0.02 1.54 16 38 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.42 5.09 8.60 -92.71 -0.80 4.29 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.03 1.44 7.16 -2.39 -0.02 1.42 16 45 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 46 H 0.07 4.20 5.68 -2.39 -0.01 4.18 16 47 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 48 H 0.02 0.77 6.49 -2.39 -0.02 0.75 16 49 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -85.97 401.55 3.07 -82.90 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.13 Total: 11.71 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.51 Total: 0.26 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -5.56 Total: -124.45 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.05 Total: -20.12 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 2.03 Total: 49.71 kcal Total: -85.97 3.07 -82.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485658654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.424 kcal (2) G-P(sol) polarization free energy of solvation -85.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds