Wall clock time and date at job start Wed Apr 1 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35312 * 125.86868 * 2 1 4 4 C 1.35347 * 106.17611 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.75147 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46828 * 124.99983 * 5 4 3 7 7 C 1.50706 * 109.46998 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99804 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99794 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99880 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.20545 * 325.48212 * 10 9 7 12 12 C 1.52675 * 109.21063 * 206.12498 * 10 9 7 13 13 C 1.52845 * 108.57297 * 299.70393 * 12 10 9 14 14 C 1.52908 * 109.68537 * 294.86800 * 13 12 10 15 15 H 1.08999 * 111.16599 * 290.31085 * 14 13 12 16 16 C 1.54791 * 107.42394 * 167.43116 * 14 13 12 17 17 N 1.47080 * 107.29864 * 263.15137 * 16 14 13 18 18 C 1.36939 * 125.48105 * 178.39626 * 17 16 14 19 19 H 1.08005 * 119.99661 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00063 * 359.93604 * 18 17 16 21 21 N 1.31616 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47141 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47073 * 119.99344 * 22 20 18 25 25 H 1.48499 * 109.47178 * 239.99439 * 22 20 18 26 26 C 1.47234 * 109.11512 * 358.33599 * 17 16 14 27 27 C 1.52854 * 111.40978 * 55.00188 * 14 13 12 28 28 H 1.08997 * 107.81269 * 197.69616 * 27 14 13 29 29 C 1.49524 * 109.21364 * 85.20252 * 10 9 7 30 30 N 1.33767 * 106.49588 * 0.25755 * 4 3 2 31 31 N 1.28631 * 108.88731 * 359.56575 * 30 4 3 32 32 H 1.09003 * 109.46713 * 90.00395 * 1 2 3 33 33 H 1.09001 * 109.47092 * 210.00557 * 1 2 3 34 34 H 1.09002 * 109.46950 * 330.00558 * 1 2 3 35 35 H 1.08000 * 126.91264 * 359.93367 * 3 2 1 36 36 H 1.08995 * 109.47329 * 5.00212 * 5 4 3 37 37 H 1.08996 * 109.47273 * 244.99865 * 5 4 3 38 38 H 1.08995 * 109.46978 * 60.00014 * 6 5 4 39 39 H 1.08996 * 109.47097 * 299.99990 * 6 5 4 40 40 H 0.96999 * 119.99999 * 0.02562 * 9 7 6 41 41 H 1.08992 * 109.62324 * 179.97438 * 12 10 9 42 42 H 1.09004 * 109.61889 * 59.42403 * 12 10 9 43 43 H 1.09002 * 109.43609 * 174.80530 * 13 12 10 44 44 H 1.08998 * 109.40523 * 54.91119 * 13 12 10 45 45 H 1.08996 * 109.88323 * 22.50669 * 16 14 13 46 46 H 1.09000 * 109.87861 * 143.51500 * 16 14 13 47 47 H 0.97004 * 119.99973 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.24475 * 222.50867 * 26 17 16 49 49 H 1.08998 * 110.24154 * 100.60138 * 26 17 16 50 50 H 1.08996 * 107.23232 * 311.69330 * 29 10 9 51 51 H 1.09003 * 108.05414 * 195.48577 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 0.0006 5 6 4.7881 1.4734 0.0003 6 6 5.6701 1.0666 1.1824 7 6 6.9258 1.9000 1.1825 8 8 7.0983 2.7366 0.3216 9 7 7.8568 1.7156 2.1394 10 6 9.0777 2.5254 2.1392 11 1 9.3723 2.7297 1.1097 12 6 10.1938 1.7517 2.8368 13 6 9.7625 1.4657 4.2750 14 6 9.6320 2.7804 5.0448 15 1 10.6078 3.2349 5.2157 16 6 8.8961 2.4701 6.3707 17 7 7.4744 2.7867 6.1664 18 6 6.4815 2.6198 7.0946 19 1 5.4631 2.8829 6.8492 20 6 6.7837 2.1117 8.3505 21 7 8.0245 1.7899 8.6490 22 14 5.4294 1.8847 9.6169 23 1 4.1327 2.3186 9.0380 24 1 5.3460 0.4526 10.0011 25 1 5.7331 2.7027 10.8185 26 6 7.2887 3.3136 4.8041 27 6 8.6857 3.7499 4.3368 28 1 8.8718 4.7475 4.7345 29 6 8.8128 3.8151 2.8479 30 7 3.4576 -0.6951 -0.0049 31 7 2.2193 -1.0431 0.0007 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8901 0.5138 35 1 1.9382 2.1281 -0.0010 36 1 4.5250 2.5274 0.0891 37 1 5.3311 1.3117 -0.9308 38 1 5.9332 0.0126 1.0936 39 1 5.1271 1.2283 2.1135 40 1 7.7190 1.0462 2.8277 41 1 11.1060 2.3483 2.8401 42 1 10.3698 0.8117 2.3137 43 1 10.5082 0.8347 4.7586 44 1 8.8012 0.9518 4.2694 45 1 9.0076 1.4145 6.6183 46 1 9.3041 3.0841 7.1736 47 1 8.2357 1.4344 9.5265 48 1 6.6122 4.1681 4.8192 49 1 6.8979 2.5352 4.1488 50 1 7.8860 4.2215 2.4431 51 1 9.6192 4.5066 2.6036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485658656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:07 Heat of formation + Delta-G solvation = 76.803265 kcal Electronic energy + Delta-G solvation = -31286.980793 eV Core-core repulsion = 27223.757203 eV Total energy + Delta-G solvation = -4063.223589 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.43379 -40.37490 -38.65027 -35.71192 -35.24308 -33.57763 -33.09186 -31.77634 -31.11588 -30.20151 -28.99393 -28.16413 -26.32738 -25.32024 -24.61107 -22.31289 -22.29495 -21.59708 -20.81076 -20.22546 -19.97976 -17.98627 -17.53163 -17.11347 -16.80415 -16.75337 -15.78140 -15.41489 -15.24201 -14.85988 -14.72043 -14.27028 -14.00790 -13.87092 -13.62400 -13.54859 -13.20479 -13.16487 -12.82670 -12.65685 -12.40139 -12.26965 -12.06494 -11.77725 -11.72623 -11.41976 -11.35424 -11.19466 -11.03044 -10.82956 -10.81178 -10.74880 -10.57776 -10.26267 -9.99138 -9.84150 -9.68833 -9.65376 -9.54642 -9.38852 -9.28673 -8.68104 -8.57113 -6.77144 -5.69399 -3.01871 1.37426 2.11421 2.34946 2.85125 3.39399 3.40525 3.45007 3.47329 4.06525 4.29410 4.51215 4.55182 4.62808 4.79852 4.85039 4.88558 5.01715 5.07587 5.17117 5.18309 5.23807 5.39708 5.48226 5.48570 5.52857 5.60609 5.63348 5.76599 5.87952 5.89977 5.91826 5.98380 6.01183 6.09345 6.12844 6.28763 6.31222 6.31454 6.34316 6.43089 6.57434 6.68423 6.77116 6.84058 6.94465 7.07312 7.60650 7.66237 7.73352 7.86166 8.29362 8.32159 8.42800 9.25409 9.86192 10.52497 11.42030 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008168 B = 0.003191 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.285249 B = 8772.707100 C =11464.804716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.297 5.297 3 C -0.048 4.048 4 C -0.015 4.015 5 C -0.013 4.013 6 C -0.138 4.138 7 C 0.517 3.483 8 O -0.553 6.553 9 N -0.718 5.718 10 C 0.155 3.845 11 H 0.083 0.917 12 C -0.128 4.128 13 C -0.106 4.106 14 C -0.109 4.109 15 H 0.069 0.931 16 C 0.184 3.816 17 N -0.605 5.605 18 C -0.225 4.225 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.909 3.091 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.144 3.856 27 C -0.090 4.090 28 H 0.060 0.940 29 C -0.112 4.112 30 N -0.264 5.264 31 N -0.088 5.088 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.191 0.809 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.404 0.596 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.050 0.950 46 H 0.036 0.964 47 H 0.251 0.749 48 H 0.026 0.974 49 H 0.019 0.981 50 H 0.063 0.937 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 -0.381 -18.247 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.091 5.091 3 C -0.199 4.199 4 C -0.153 4.153 5 C -0.053 4.053 6 C -0.178 4.178 7 C 0.304 3.696 8 O -0.431 6.431 9 N -0.371 5.371 10 C 0.051 3.949 11 H 0.102 0.898 12 C -0.166 4.166 13 C -0.144 4.144 14 C -0.128 4.128 15 H 0.087 0.913 16 C 0.059 3.941 17 N -0.332 5.332 18 C -0.353 4.353 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.018 3.982 27 C -0.110 4.110 28 H 0.078 0.922 29 C -0.151 4.151 30 N -0.131 5.131 31 N -0.068 5.068 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.208 0.792 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.241 0.759 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.037 0.963 50 H 0.082 0.918 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.157 -1.399 -18.635 20.011 hybrid contribution -1.116 0.812 1.278 1.881 sum -8.272 -0.586 -17.357 19.236 Atomic orbital electron populations 1.22263 0.72782 1.06040 1.04872 1.47232 1.09394 1.05010 1.47415 1.23435 0.90894 0.94761 1.10800 1.22066 0.95415 0.91467 1.06390 1.19578 0.89276 0.97392 0.99038 1.21606 0.94220 1.01298 1.00671 1.20554 0.84702 0.83474 0.80873 1.90661 1.78808 1.35742 1.37937 1.46345 1.20104 1.40517 1.30126 1.20194 0.84273 0.90756 0.99717 0.89849 1.21775 0.97716 1.00084 0.96987 1.21518 1.01357 0.97864 0.93678 1.22087 0.98161 0.94431 0.98096 0.91271 1.21335 0.82679 0.99820 0.90260 1.44414 1.04419 1.74929 1.09397 1.19084 0.88291 1.35997 0.91959 0.90640 1.24771 0.96514 1.01609 0.97598 1.69972 1.16366 1.49544 1.21050 0.86089 0.80882 0.77403 0.81668 1.20645 1.21803 1.21823 1.21324 0.93740 0.95665 0.87500 1.20796 0.97320 0.99543 0.93305 0.92166 1.20383 1.02294 0.97077 0.95352 1.75045 1.09362 1.12112 1.16540 1.78310 0.96497 1.12148 1.19800 0.89156 0.88021 0.88238 0.79177 0.89337 0.89395 0.88213 0.88633 0.75942 0.90676 0.91806 0.91955 0.91816 0.93167 0.94614 0.93901 0.95549 0.96340 0.91830 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.39 59.85 0.68 1.00 16 2 N -0.30 -2.74 3.74 -68.05 -0.25 -2.99 16 3 C -0.05 -0.43 11.54 -17.05 -0.20 -0.63 16 4 C -0.02 -0.18 6.50 -82.78 -0.54 -0.72 16 5 C -0.01 -0.14 5.08 -27.88 -0.14 -0.29 16 6 C -0.14 -1.62 5.68 -27.88 -0.16 -1.77 16 7 C 0.52 7.10 7.60 -10.98 -0.08 7.02 16 8 O -0.55 -8.98 15.57 5.56 0.09 -8.89 16 9 N -0.72 -9.58 3.65 -55.65 -0.20 -9.78 16 10 C 0.15 2.05 2.69 -69.82 -0.19 1.86 16 11 H 0.08 1.12 7.55 -51.92 -0.39 0.73 16 12 C -0.13 -1.56 5.62 -26.98 -0.15 -1.71 16 13 C -0.11 -1.61 4.70 -26.86 -0.13 -1.74 16 14 C -0.11 -1.92 3.32 -89.80 -0.30 -2.22 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 16 C 0.18 4.33 4.84 -2.78 -0.01 4.31 16 17 N -0.61 -15.11 3.40 -170.68 -0.58 -15.69 16 18 C -0.22 -6.22 10.26 -15.06 -0.15 -6.37 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.83 10.29 55.49 0.57 -26.26 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.14 2.94 6.48 -3.31 -0.02 2.91 16 27 C -0.09 -1.55 2.64 -92.06 -0.24 -1.80 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 C -0.11 -1.62 4.72 -30.14 -0.14 -1.76 16 30 N -0.26 -3.69 12.40 33.29 0.41 -3.28 16 31 N -0.09 -1.14 13.17 60.35 0.79 -0.35 16 32 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.19 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 37 H 0.09 1.00 8.10 -51.93 -0.42 0.57 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.40 5.37 6.24 -40.82 -0.25 5.12 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.05 6.06 -51.93 -0.31 0.73 16 45 H 0.05 1.30 6.89 -51.93 -0.36 0.95 16 46 H 0.04 0.95 7.53 -51.93 -0.39 0.56 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.02 0.37 6.23 -51.93 -0.32 0.04 16 50 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -35.05 397.89 -8.39 -43.43 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.31 Total: 2.99 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -1.87 Total: -2.25 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.74 Total: -58.35 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.05 -8.39 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485658656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.237 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds