Wall clock time and date at job start Wed Apr 1 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35312 * 125.86868 * 2 1 4 4 C 1.35347 * 106.17611 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.75147 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.46828 * 124.99983 * 5 4 3 7 7 C 1.50706 * 109.46998 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99804 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99794 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99880 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.20545 * 325.48212 * 10 9 7 12 12 C 1.52675 * 109.21063 * 206.12498 * 10 9 7 13 13 C 1.52845 * 108.57297 * 299.70393 * 12 10 9 14 14 C 1.52908 * 109.68537 * 294.86800 * 13 12 10 15 15 H 1.08999 * 111.16599 * 290.31085 * 14 13 12 16 16 C 1.54791 * 107.42394 * 167.43116 * 14 13 12 17 17 N 1.47080 * 107.29864 * 263.15137 * 16 14 13 18 18 C 1.36939 * 125.48105 * 178.39626 * 17 16 14 19 19 H 1.08005 * 119.99661 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00063 * 359.93604 * 18 17 16 21 21 N 1.31616 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99966 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47141 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47073 * 119.99344 * 22 20 18 25 25 H 1.48499 * 109.47178 * 239.99439 * 22 20 18 26 26 C 1.47234 * 109.11512 * 358.33599 * 17 16 14 27 27 C 1.52854 * 111.40978 * 55.00188 * 14 13 12 28 28 H 1.08997 * 107.81269 * 197.69616 * 27 14 13 29 29 C 1.49524 * 109.21364 * 85.20252 * 10 9 7 30 30 N 1.33767 * 106.49588 * 0.25755 * 4 3 2 31 31 N 1.28631 * 108.88731 * 359.56575 * 30 4 3 32 32 H 1.09003 * 109.46713 * 90.00395 * 1 2 3 33 33 H 1.09001 * 109.47092 * 210.00557 * 1 2 3 34 34 H 1.09002 * 109.46950 * 330.00558 * 1 2 3 35 35 H 1.08000 * 126.91264 * 359.93367 * 3 2 1 36 36 H 1.08995 * 109.47329 * 5.00212 * 5 4 3 37 37 H 1.08996 * 109.47273 * 244.99865 * 5 4 3 38 38 H 1.08995 * 109.46978 * 60.00014 * 6 5 4 39 39 H 1.08996 * 109.47097 * 299.99990 * 6 5 4 40 40 H 0.96999 * 119.99999 * 0.02562 * 9 7 6 41 41 H 1.08992 * 109.62324 * 179.97438 * 12 10 9 42 42 H 1.09004 * 109.61889 * 59.42403 * 12 10 9 43 43 H 1.09002 * 109.43609 * 174.80530 * 13 12 10 44 44 H 1.08998 * 109.40523 * 54.91119 * 13 12 10 45 45 H 1.08996 * 109.88323 * 22.50669 * 16 14 13 46 46 H 1.09000 * 109.87861 * 143.51500 * 16 14 13 47 47 H 0.97004 * 119.99973 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.24475 * 222.50867 * 26 17 16 49 49 H 1.08998 * 110.24154 * 100.60138 * 26 17 16 50 50 H 1.08996 * 107.23232 * 311.69330 * 29 10 9 51 51 H 1.09003 * 108.05414 * 195.48577 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2579 1.0965 0.0000 4 6 3.5322 0.6404 0.0006 5 6 4.7881 1.4734 0.0003 6 6 5.6701 1.0666 1.1824 7 6 6.9258 1.9000 1.1825 8 8 7.0983 2.7366 0.3216 9 7 7.8568 1.7156 2.1394 10 6 9.0777 2.5254 2.1392 11 1 9.3723 2.7297 1.1097 12 6 10.1938 1.7517 2.8368 13 6 9.7625 1.4657 4.2750 14 6 9.6320 2.7804 5.0448 15 1 10.6078 3.2349 5.2157 16 6 8.8961 2.4701 6.3707 17 7 7.4744 2.7867 6.1664 18 6 6.4815 2.6198 7.0946 19 1 5.4631 2.8829 6.8492 20 6 6.7837 2.1117 8.3505 21 7 8.0245 1.7899 8.6490 22 14 5.4294 1.8847 9.6169 23 1 4.1327 2.3186 9.0380 24 1 5.3460 0.4526 10.0011 25 1 5.7331 2.7027 10.8185 26 6 7.2887 3.3136 4.8041 27 6 8.6857 3.7499 4.3368 28 1 8.8718 4.7475 4.7345 29 6 8.8128 3.8151 2.8479 30 7 3.4576 -0.6951 -0.0049 31 7 2.2193 -1.0431 0.0007 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8901 0.5138 35 1 1.9382 2.1281 -0.0010 36 1 4.5250 2.5274 0.0891 37 1 5.3311 1.3117 -0.9308 38 1 5.9332 0.0126 1.0936 39 1 5.1271 1.2283 2.1135 40 1 7.7190 1.0462 2.8277 41 1 11.1060 2.3483 2.8401 42 1 10.3698 0.8117 2.3137 43 1 10.5082 0.8347 4.7586 44 1 8.8012 0.9518 4.2694 45 1 9.0076 1.4145 6.6183 46 1 9.3041 3.0841 7.1736 47 1 8.2357 1.4344 9.5265 48 1 6.6122 4.1681 4.8192 49 1 6.8979 2.5352 4.1488 50 1 7.8860 4.2215 2.4431 51 1 9.6192 4.5066 2.6036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485658656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:07 Heat of formation + Delta-G solvation = 53.945019 kcal Electronic energy + Delta-G solvation = -31287.972000 eV Core-core repulsion = 27223.757203 eV Total energy + Delta-G solvation = -4064.214797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.20169 -41.60657 -39.95373 -37.13986 -36.05310 -34.69285 -34.40707 -33.30189 -32.44461 -31.28205 -30.46545 -28.70490 -27.87598 -26.89078 -25.87753 -23.68484 -23.01866 -22.66002 -21.93674 -21.80751 -21.19028 -19.35215 -18.71865 -18.39760 -17.86624 -17.52036 -16.92326 -16.74252 -16.66818 -16.25231 -15.69204 -15.57937 -15.25175 -15.18422 -14.62553 -14.47532 -14.24597 -14.07043 -13.98285 -13.87855 -13.66057 -13.57187 -13.26774 -13.11788 -12.98694 -12.76154 -12.64618 -12.60187 -12.54232 -12.27414 -12.14983 -12.11662 -11.80506 -11.75171 -11.64909 -11.16823 -11.04564 -10.98905 -10.83153 -10.73645 -10.64728 -10.10855 -9.83455 -8.82462 -7.83045 -5.17267 0.65695 1.44565 1.45041 1.48569 1.55069 1.59987 1.76322 2.37984 2.49627 3.34633 3.38499 3.68192 3.72657 3.74981 3.87628 3.90226 3.97529 4.07776 4.16707 4.19739 4.25140 4.31357 4.34245 4.41327 4.43731 4.55731 4.63521 4.64956 4.71152 4.77245 4.79685 4.82209 4.87483 4.97224 5.05855 5.09972 5.12853 5.15338 5.22897 5.27369 5.29688 5.43390 5.48681 5.50748 5.60604 5.70182 5.71422 5.79457 5.87027 6.23255 6.64737 7.14044 7.34321 7.51248 7.82410 8.46373 9.26760 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008168 B = 0.003191 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.285249 B = 8772.707100 C =11464.804716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.290 5.290 3 C -0.034 4.034 4 C -0.038 4.038 5 C -0.005 4.005 6 C -0.131 4.131 7 C 0.519 3.481 8 O -0.576 6.576 9 N -0.718 5.718 10 C 0.154 3.846 11 H 0.091 0.909 12 C -0.114 4.114 13 C -0.101 4.101 14 C -0.095 4.095 15 H 0.087 0.913 16 C 0.193 3.807 17 N -0.624 5.624 18 C -0.239 4.239 19 H 0.077 0.923 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.140 3.860 27 C -0.075 4.075 28 H 0.052 0.948 29 C -0.104 4.104 30 N -0.304 5.304 31 N -0.125 5.125 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.129 0.871 35 H 0.231 0.769 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.404 0.596 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.018 0.982 46 H -0.007 1.007 47 H 0.245 0.755 48 H 0.018 0.982 49 H 0.031 0.969 50 H 0.053 0.947 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.033 0.517 -19.884 21.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.084 5.084 3 C -0.186 4.186 4 C -0.177 4.177 5 C -0.044 4.044 6 C -0.171 4.171 7 C 0.307 3.693 8 O -0.457 6.457 9 N -0.370 5.370 10 C 0.050 3.950 11 H 0.109 0.891 12 C -0.152 4.152 13 C -0.139 4.139 14 C -0.114 4.114 15 H 0.106 0.894 16 C 0.068 3.932 17 N -0.350 5.350 18 C -0.368 4.368 19 H 0.095 0.905 20 C -0.258 4.258 21 N -0.598 5.598 22 Si 0.802 3.198 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.015 3.985 27 C -0.094 4.094 28 H 0.071 0.929 29 C -0.143 4.143 30 N -0.170 5.170 31 N -0.104 5.104 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.147 0.853 35 H 0.248 0.752 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.241 0.759 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.036 0.964 46 H 0.011 0.989 47 H 0.055 0.945 48 H 0.036 0.964 49 H 0.049 0.951 50 H 0.071 0.929 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.972 -0.517 -20.300 21.815 hybrid contribution -0.966 0.585 1.796 2.122 sum -8.938 0.068 -18.504 20.550 Atomic orbital electron populations 1.22734 0.69853 1.07669 1.06710 1.47665 1.11039 1.04308 1.45350 1.24035 0.89973 0.96236 1.08319 1.22271 0.96698 0.90975 1.07743 1.19491 0.89012 0.97809 0.98114 1.21553 0.93551 1.00923 1.01059 1.20797 0.85025 0.83120 0.80399 1.90646 1.79366 1.36823 1.38821 1.46409 1.20266 1.40399 1.29926 1.20254 0.84452 0.90247 1.00006 0.89069 1.21708 0.97880 1.01258 0.94320 1.21421 1.00853 0.96035 0.95567 1.21983 0.98176 0.96213 0.95069 0.89441 1.21108 0.82786 0.96927 0.92416 1.44694 1.04558 1.75041 1.10748 1.19443 0.89141 1.35394 0.92810 0.90491 1.25571 0.98659 1.01984 0.99546 1.70194 1.18111 1.50459 1.21028 0.85084 0.78872 0.76895 0.78954 1.19197 1.21910 1.22047 1.21504 0.95867 0.95439 0.85665 1.20699 0.94776 0.98673 0.95301 0.92914 1.20306 1.02799 0.98439 0.92746 1.74967 1.10376 1.13676 1.17970 1.78216 0.96670 1.13732 1.21817 0.87172 0.87785 0.85308 0.75222 0.88326 0.90174 0.88245 0.88838 0.75941 0.88582 0.89968 0.91586 0.93482 0.96372 0.98866 0.94544 0.96399 0.95089 0.92855 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 11.39 127.77 1.46 1.82 16 2 N -0.29 -4.88 3.74 -369.21 -1.38 -6.26 16 3 C -0.03 -0.54 11.54 83.49 0.96 0.43 16 4 C -0.04 -0.84 6.50 41.60 0.27 -0.57 16 5 C 0.00 -0.10 5.08 29.85 0.15 0.05 16 6 C -0.13 -3.00 5.68 29.85 0.17 -2.83 16 7 C 0.52 13.63 7.60 87.66 0.67 14.30 16 8 O -0.58 -17.86 15.57 -3.03 -0.05 -17.91 16 9 N -0.72 -18.02 3.65 -448.37 -1.64 -19.66 16 10 C 0.15 3.65 2.69 43.77 0.12 3.77 16 11 H 0.09 2.14 7.55 -2.38 -0.02 2.12 16 12 C -0.11 -2.40 5.62 30.43 0.17 -2.23 16 13 C -0.10 -2.90 4.70 30.51 0.14 -2.75 16 14 C -0.10 -3.29 3.32 -10.26 -0.03 -3.32 16 15 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 16 C 0.19 9.36 4.84 86.88 0.42 9.78 16 17 N -0.62 -31.87 3.40 -693.91 -2.36 -34.23 16 18 C -0.24 -13.45 10.26 84.03 0.86 -12.59 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 21 N -0.95 -57.18 10.29 21.65 0.22 -56.96 16 22 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 C 0.14 5.71 6.48 86.45 0.56 6.27 16 27 C -0.08 -2.49 2.64 -11.72 -0.03 -2.52 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 C -0.10 -2.74 4.72 28.39 0.13 -2.60 16 30 N -0.30 -8.60 12.40 -48.61 -0.60 -9.20 16 31 N -0.13 -3.23 13.17 37.02 0.49 -2.74 16 32 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.23 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.08 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.40 10.31 6.24 -92.71 -0.58 9.73 16 41 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.51 6.06 -2.39 -0.01 1.50 16 45 H 0.02 0.98 6.89 -2.39 -0.02 0.97 16 46 H -0.01 -0.39 7.53 -2.39 -0.02 -0.41 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.03 1.20 6.23 -2.39 -0.01 1.19 16 50 H 0.05 1.55 7.70 -2.39 -0.02 1.53 16 51 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -79.49 397.89 3.55 -75.94 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.35 Total: 19.13 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 6.49 Total: 3.75 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -5.27 Total: -129.05 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -79.49 3.55 -75.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485658656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.885 kcal (2) G-P(sol) polarization free energy of solvation -79.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds