Wall clock time and date at job start Wed Apr 1 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03691 * 2 1 4 4 C 1.35314 * 107.74497 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.03684 * 180.02562 * 4 3 2 6 6 H 1.08999 * 115.55108 * 334.32834 * 5 4 3 7 7 C 1.53007 * 117.51706 * 188.62803 * 5 4 3 8 8 C 1.52998 * 59.99827 * 252.51548 * 7 5 4 9 9 H 1.09005 * 117.49753 * 107.49036 * 8 7 5 10 10 C 1.50695 * 117.50075 * 252.50929 * 8 7 5 11 11 O 1.21275 * 120.00198 * 68.62199 * 10 8 7 12 12 N 1.34784 * 120.00075 * 248.62520 * 10 8 7 13 13 C 1.46502 * 120.00190 * 180.02562 * 12 10 8 14 14 C 1.52995 * 109.46971 * 179.97438 * 13 12 10 15 15 N 1.46901 * 109.46955 * 179.97438 * 14 13 12 16 16 C 1.46896 * 111.00230 * 294.30253 * 15 14 13 17 17 C 1.53241 * 109.34313 * 172.74691 * 16 15 14 18 18 N 1.47072 * 108.52064 * 53.82907 * 17 16 15 19 19 C 1.36941 * 120.88323 * 128.84087 * 18 17 16 20 20 H 1.08002 * 119.99268 * 333.49686 * 19 18 17 21 21 C 1.38810 * 120.00170 * 153.49932 * 19 18 17 22 22 N 1.31618 * 119.99555 * 159.48867 * 21 19 18 23 23 Si 1.86796 * 120.00041 * 339.48283 * 21 19 18 24 24 H 1.48503 * 109.46843 * 91.94449 * 23 21 19 25 25 H 1.48497 * 109.47369 * 211.94113 * 23 21 19 26 26 H 1.48501 * 109.47471 * 331.94794 * 23 21 19 27 27 C 1.47075 * 118.23877 * 308.81973 * 18 17 16 28 28 C 1.46896 * 110.99795 * 170.00253 * 15 14 13 29 29 C 1.39862 * 107.92246 * 0.26438 * 4 3 2 30 30 N 1.30836 * 108.20190 * 359.55321 * 29 4 3 31 31 H 1.09004 * 109.47186 * 89.99811 * 1 2 3 32 32 H 1.09000 * 109.47277 * 209.99645 * 1 2 3 33 33 H 1.08996 * 109.47334 * 329.99877 * 1 2 3 34 34 H 1.08002 * 126.12523 * 359.97438 * 3 2 1 35 35 H 1.08999 * 117.49622 * 145.02817 * 7 5 4 36 36 H 1.08997 * 117.49854 * 0.02562 * 7 5 4 37 37 H 0.96998 * 120.00002 * 359.97438 * 12 10 8 38 38 H 1.09004 * 109.46679 * 299.99793 * 13 12 10 39 39 H 1.09001 * 109.46928 * 59.99697 * 13 12 10 40 40 H 1.08999 * 109.47563 * 300.00088 * 14 13 12 41 41 H 1.09001 * 109.47300 * 60.00221 * 14 13 12 42 42 H 1.09001 * 109.49468 * 292.70698 * 16 15 14 43 43 H 1.09009 * 109.49270 * 52.78577 * 16 15 14 44 44 H 1.09000 * 109.62622 * 294.12181 * 17 16 15 45 45 H 1.08998 * 109.63137 * 173.54361 * 17 16 15 46 46 H 0.97003 * 119.99428 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.62902 * 291.47489 * 27 18 17 48 48 H 1.09005 * 109.63407 * 170.89234 * 27 18 17 49 49 H 1.09000 * 109.49310 * 307.21290 * 28 15 14 50 50 H 1.09000 * 109.49674 * 67.29791 * 28 15 14 51 51 H 1.07998 * 125.90071 * 179.73971 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7679 1.5453 0.0013 6 1 4.6332 2.5396 -0.4246 7 6 6.1247 0.8677 -0.2017 8 6 5.7370 1.4059 1.1771 9 1 5.4892 0.6782 1.9499 10 6 6.4321 2.6536 1.6576 11 8 6.2141 3.7163 1.1154 12 7 7.2961 2.5886 2.6900 13 6 7.9714 3.8017 3.1576 14 6 8.8898 3.4541 4.3308 15 7 9.5675 4.6704 4.7993 16 6 10.4807 5.1924 3.7739 17 6 11.0275 6.5509 4.2253 18 7 11.6181 6.3955 5.5633 19 6 12.8872 6.8374 5.8270 20 1 13.6124 6.9037 5.0294 21 6 13.2414 7.1999 7.1192 22 7 14.5099 7.2333 7.4690 23 14 11.9180 7.6405 8.3616 24 1 11.5266 6.4251 9.1199 25 1 12.4425 8.6630 9.3021 26 1 10.7326 8.1834 7.6508 27 6 10.8095 5.7535 6.6107 28 6 10.2713 4.4264 6.0653 29 6 3.5347 -0.7320 -0.0052 30 7 2.2892 -1.1327 0.0006 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.9281 2.1193 -0.0004 35 1 6.8824 1.4162 -0.7612 36 1 6.1319 -0.2139 -0.3362 37 1 7.4702 1.7387 3.1239 38 1 8.5630 4.2242 2.3454 39 1 7.2276 4.5294 3.4821 40 1 8.2980 3.0318 5.1429 41 1 9.6336 2.7262 4.0067 42 1 11.3074 4.4957 3.6345 43 1 9.9422 5.3112 2.8336 44 1 10.2157 7.2772 4.2655 45 1 11.7910 6.8894 3.5250 46 1 14.7574 7.4870 8.3719 47 1 9.9768 6.4032 6.8802 48 1 11.4290 5.5648 7.4875 49 1 9.5810 3.9897 6.7870 50 1 11.1010 3.7404 5.8940 51 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490507257.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:44 Heat of formation + Delta-G solvation = 111.916193 kcal Electronic energy + Delta-G solvation = -29282.243011 eV Core-core repulsion = 25220.542032 eV Total energy + Delta-G solvation = -4061.700979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.71291 -40.08882 -38.53994 -36.98627 -35.51592 -34.05239 -33.47422 -31.62654 -30.65641 -30.50049 -29.28535 -27.33927 -26.27300 -24.25327 -23.55386 -23.35302 -22.42174 -21.56524 -21.44109 -20.51315 -19.99731 -19.41996 -17.71604 -17.17973 -16.91658 -16.13957 -15.85562 -15.72005 -15.42845 -15.03012 -14.86000 -14.68313 -14.45141 -14.11983 -14.06982 -13.88539 -13.66514 -13.50559 -13.29195 -13.01706 -12.89551 -12.74753 -12.47307 -12.26717 -12.09678 -11.76227 -11.65196 -11.38168 -11.27328 -10.97350 -10.88530 -10.81219 -10.59470 -10.31656 -10.09452 -10.05082 -9.87188 -9.80951 -9.45448 -9.18310 -8.67803 -8.64659 -8.07683 -6.95857 -5.93965 -3.29194 1.41842 2.05748 2.14085 2.44477 2.92534 3.32656 3.50348 3.55097 3.65287 3.98646 4.21381 4.38600 4.43617 4.48410 4.54435 4.57785 4.63131 4.72827 4.81765 4.88809 4.89333 4.96899 4.98295 5.07291 5.21809 5.32419 5.34597 5.42263 5.55104 5.62515 5.65405 5.70019 5.80106 5.90342 5.92816 5.93748 6.02219 6.07039 6.17572 6.20910 6.27389 6.38329 6.52434 6.57499 6.65383 6.88484 7.23847 7.28688 7.36096 7.40717 7.95022 8.06728 8.33267 8.93890 9.72660 10.11950 11.22081 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.001507 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.784445 B =18574.044458 C =18854.668685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.377 5.377 3 C 0.067 3.933 4 C -0.209 4.209 5 C -0.037 4.037 6 H 0.124 0.876 7 C -0.143 4.143 8 C -0.185 4.185 9 H 0.123 0.877 10 C 0.543 3.457 11 O -0.540 6.540 12 N -0.725 5.725 13 C 0.121 3.879 14 C 0.045 3.955 15 N -0.531 5.531 16 C 0.037 3.963 17 C 0.151 3.849 18 N -0.609 5.609 19 C -0.259 4.259 20 H 0.086 0.914 21 C 0.022 3.978 22 N -0.910 5.910 23 Si 0.884 3.116 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.269 1.269 27 C 0.129 3.871 28 C 0.045 3.955 29 C 0.054 3.946 30 N -0.298 5.298 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.031 0.969 45 H 0.066 0.934 46 H 0.262 0.738 47 H 0.034 0.966 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.037 0.963 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.058 -17.647 -15.125 34.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.159 5.159 3 C -0.079 4.079 4 C -0.220 4.220 5 C -0.057 4.057 6 H 0.142 0.858 7 C -0.180 4.180 8 C -0.206 4.206 9 H 0.141 0.859 10 C 0.329 3.671 11 O -0.417 6.417 12 N -0.377 5.377 13 C -0.002 4.002 14 C -0.084 4.084 15 N -0.256 5.256 16 C -0.092 4.092 17 C 0.025 3.975 18 N -0.333 5.333 19 C -0.387 4.387 20 H 0.103 0.897 21 C -0.177 4.177 22 N -0.553 5.553 23 Si 0.714 3.286 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.003 3.997 28 C -0.084 4.084 29 C -0.132 4.132 30 N -0.119 5.119 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.193 0.807 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.234 0.766 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.055 0.945 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -27.381 -17.449 -15.291 35.888 hybrid contribution 0.578 -0.107 1.055 1.208 sum -26.803 -17.556 -14.236 35.061 Atomic orbital electron populations 1.21884 0.74005 1.04645 1.03495 1.48467 1.06744 1.03811 1.56868 1.22317 0.90694 0.93538 1.01396 1.19265 0.93064 0.93098 1.16583 1.20190 0.87008 0.99407 0.99111 0.85837 1.23040 0.98314 1.01122 0.95570 1.22356 1.05438 0.98926 0.93907 0.85914 1.19622 0.78677 0.89369 0.79431 1.90710 1.63517 1.30645 1.56784 1.45883 1.44980 1.12014 1.34799 1.21373 0.95790 0.86592 0.96463 1.22205 0.96730 0.92577 0.96911 1.61833 1.31597 1.27683 1.04529 1.22746 0.93882 0.98757 0.93790 1.21010 0.96057 0.92863 0.87551 1.44416 1.14362 1.67781 1.06716 1.18941 0.85467 1.38560 0.95754 0.89664 1.25259 0.95740 0.99312 0.97387 1.69840 1.15570 1.50744 1.19153 0.86948 0.82712 0.77702 0.81195 1.21668 1.23178 1.19431 1.21445 0.94348 0.91255 0.92607 1.22647 0.96029 0.99428 0.90308 1.23759 0.95217 0.94419 0.99806 1.77377 1.01623 1.08357 1.24532 0.90635 0.89229 0.89319 0.80656 0.87808 0.87678 0.76632 0.91143 0.90502 0.90617 0.94624 0.94767 0.91207 0.95069 0.91588 0.92798 0.94864 0.90665 0.91584 0.94505 0.80076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.33 11.47 59.85 0.69 1.02 16 2 N -0.38 -2.76 4.01 -68.16 -0.27 -3.04 16 3 C 0.07 0.47 11.40 -17.22 -0.20 0.27 16 4 C -0.21 -1.61 5.76 -105.06 -0.61 -2.21 16 5 C -0.04 -0.29 5.76 -91.77 -0.53 -0.82 16 6 H 0.12 1.10 7.67 -51.93 -0.40 0.71 16 7 C -0.14 -0.92 9.73 -26.73 -0.26 -1.18 16 8 C -0.18 -1.41 5.89 -91.78 -0.54 -1.95 16 9 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 10 C 0.54 5.90 7.61 -10.98 -0.08 5.82 16 11 O -0.54 -8.04 16.26 5.56 0.09 -7.95 16 12 N -0.73 -6.90 5.56 -60.29 -0.33 -7.23 16 13 C 0.12 1.43 5.61 -4.04 -0.02 1.41 16 14 C 0.04 0.54 5.08 -3.83 -0.02 0.52 16 15 N -0.53 -8.50 4.63 -234.32 -1.08 -9.59 16 16 C 0.04 0.62 5.46 -3.70 -0.02 0.60 16 17 C 0.15 3.04 6.69 -3.61 -0.02 3.02 16 18 N -0.61 -14.66 2.82 -172.02 -0.48 -15.14 16 19 C -0.26 -7.29 10.08 -15.06 -0.15 -7.44 16 20 H 0.09 2.55 8.05 -52.49 -0.42 2.13 16 21 C 0.02 0.63 5.24 -17.43 -0.09 0.54 16 22 N -0.91 -27.97 13.97 55.49 0.78 -27.20 16 23 Si 0.88 22.52 24.30 -169.99 -4.13 18.39 16 24 H -0.29 -7.03 6.58 56.52 0.37 -6.66 16 25 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 26 H -0.27 -6.83 6.61 56.52 0.37 -6.45 16 27 C 0.13 2.85 4.35 -3.60 -0.02 2.83 16 28 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 29 C 0.05 0.42 11.35 -17.37 -0.20 0.23 16 30 N -0.30 -2.79 12.58 30.62 0.39 -2.41 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 34 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.47 6.97 -51.93 -0.36 0.11 16 37 H 0.40 2.68 8.47 -40.82 -0.35 2.33 16 38 H 0.07 0.92 6.40 -51.93 -0.33 0.58 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 0.82 7.97 -51.93 -0.41 0.40 16 41 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.02 6.16 -51.92 -0.32 0.70 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.30 7.95 -51.93 -0.41 0.88 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 47 H 0.03 0.75 6.94 -51.93 -0.36 0.39 16 48 H 0.08 1.79 4.60 -51.93 -0.24 1.55 16 49 H 0.07 1.01 7.99 -51.93 -0.41 0.59 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 51 H 0.18 0.93 7.19 -52.49 -0.38 0.56 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -36.20 405.67 -9.28 -45.48 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -8.24 Total: -0.85 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.09 Total: 3.42 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -1.02 Total: -64.60 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.13 Total: 18.39 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.20 -9.28 -45.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490507257.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.396 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds