Wall clock time and date at job start Wed Apr 1 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03691 * 2 1 4 4 C 1.35314 * 107.74497 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.03684 * 180.02562 * 4 3 2 6 6 H 1.08999 * 115.55108 * 334.32834 * 5 4 3 7 7 C 1.53007 * 117.51706 * 188.62803 * 5 4 3 8 8 C 1.52998 * 59.99827 * 252.51548 * 7 5 4 9 9 H 1.09005 * 117.49753 * 107.49036 * 8 7 5 10 10 C 1.50695 * 117.50075 * 252.50929 * 8 7 5 11 11 O 1.21275 * 120.00198 * 68.62199 * 10 8 7 12 12 N 1.34784 * 120.00075 * 248.62520 * 10 8 7 13 13 C 1.46502 * 120.00190 * 180.02562 * 12 10 8 14 14 C 1.52995 * 109.46971 * 179.97438 * 13 12 10 15 15 N 1.46901 * 109.46955 * 179.97438 * 14 13 12 16 16 C 1.46896 * 111.00230 * 294.30253 * 15 14 13 17 17 C 1.53241 * 109.34313 * 172.74691 * 16 15 14 18 18 N 1.47072 * 108.52064 * 53.82907 * 17 16 15 19 19 C 1.36941 * 120.88323 * 128.84087 * 18 17 16 20 20 H 1.08002 * 119.99268 * 333.49686 * 19 18 17 21 21 C 1.38810 * 120.00170 * 153.49932 * 19 18 17 22 22 N 1.31618 * 119.99555 * 159.48867 * 21 19 18 23 23 Si 1.86796 * 120.00041 * 339.48283 * 21 19 18 24 24 H 1.48503 * 109.46843 * 91.94449 * 23 21 19 25 25 H 1.48497 * 109.47369 * 211.94113 * 23 21 19 26 26 H 1.48501 * 109.47471 * 331.94794 * 23 21 19 27 27 C 1.47075 * 118.23877 * 308.81973 * 18 17 16 28 28 C 1.46896 * 110.99795 * 170.00253 * 15 14 13 29 29 C 1.39862 * 107.92246 * 0.26438 * 4 3 2 30 30 N 1.30836 * 108.20190 * 359.55321 * 29 4 3 31 31 H 1.09004 * 109.47186 * 89.99811 * 1 2 3 32 32 H 1.09000 * 109.47277 * 209.99645 * 1 2 3 33 33 H 1.08996 * 109.47334 * 329.99877 * 1 2 3 34 34 H 1.08002 * 126.12523 * 359.97438 * 3 2 1 35 35 H 1.08999 * 117.49622 * 145.02817 * 7 5 4 36 36 H 1.08997 * 117.49854 * 0.02562 * 7 5 4 37 37 H 0.96998 * 120.00002 * 359.97438 * 12 10 8 38 38 H 1.09004 * 109.46679 * 299.99793 * 13 12 10 39 39 H 1.09001 * 109.46928 * 59.99697 * 13 12 10 40 40 H 1.08999 * 109.47563 * 300.00088 * 14 13 12 41 41 H 1.09001 * 109.47300 * 60.00221 * 14 13 12 42 42 H 1.09001 * 109.49468 * 292.70698 * 16 15 14 43 43 H 1.09009 * 109.49270 * 52.78577 * 16 15 14 44 44 H 1.09000 * 109.62622 * 294.12181 * 17 16 15 45 45 H 1.08998 * 109.63137 * 173.54361 * 17 16 15 46 46 H 0.97003 * 119.99428 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.62902 * 291.47489 * 27 18 17 48 48 H 1.09005 * 109.63407 * 170.89234 * 27 18 17 49 49 H 1.09000 * 109.49310 * 307.21290 * 28 15 14 50 50 H 1.09000 * 109.49674 * 67.29791 * 28 15 14 51 51 H 1.07998 * 125.90071 * 179.73971 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7679 1.5453 0.0013 6 1 4.6332 2.5396 -0.4246 7 6 6.1247 0.8677 -0.2017 8 6 5.7370 1.4059 1.1771 9 1 5.4892 0.6782 1.9499 10 6 6.4321 2.6536 1.6576 11 8 6.2141 3.7163 1.1154 12 7 7.2961 2.5886 2.6900 13 6 7.9714 3.8017 3.1576 14 6 8.8898 3.4541 4.3308 15 7 9.5675 4.6704 4.7993 16 6 10.4807 5.1924 3.7739 17 6 11.0275 6.5509 4.2253 18 7 11.6181 6.3955 5.5633 19 6 12.8872 6.8374 5.8270 20 1 13.6124 6.9037 5.0294 21 6 13.2414 7.1999 7.1192 22 7 14.5099 7.2333 7.4690 23 14 11.9180 7.6405 8.3616 24 1 11.5266 6.4251 9.1199 25 1 12.4425 8.6630 9.3021 26 1 10.7326 8.1834 7.6508 27 6 10.8095 5.7535 6.6107 28 6 10.2713 4.4264 6.0653 29 6 3.5347 -0.7320 -0.0052 30 7 2.2892 -1.1327 0.0006 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5138 34 1 1.9281 2.1193 -0.0004 35 1 6.8824 1.4162 -0.7612 36 1 6.1319 -0.2139 -0.3362 37 1 7.4702 1.7387 3.1239 38 1 8.5630 4.2242 2.3454 39 1 7.2276 4.5294 3.4821 40 1 8.2980 3.0318 5.1429 41 1 9.6336 2.7262 4.0067 42 1 11.3074 4.4957 3.6345 43 1 9.9422 5.3112 2.8336 44 1 10.2157 7.2772 4.2655 45 1 11.7910 6.8894 3.5250 46 1 14.7574 7.4870 8.3719 47 1 9.9768 6.4032 6.8802 48 1 11.4290 5.5648 7.4875 49 1 9.5810 3.9897 6.7870 50 1 11.1010 3.7404 5.8940 51 1 4.4054 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490507257.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:43 Heat of formation + Delta-G solvation = 84.834503 kcal Electronic energy + Delta-G solvation = -29283.417361 eV Core-core repulsion = 25220.542032 eV Total energy + Delta-G solvation = -4062.875329 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.21991 -40.92052 -39.92537 -37.70789 -36.81447 -35.38362 -33.90248 -33.60585 -32.06039 -31.19844 -30.51279 -28.03267 -27.48838 -25.45051 -24.91550 -23.98445 -23.87002 -22.70174 -21.92590 -21.31851 -20.97505 -20.55607 -18.83973 -18.38405 -17.72885 -17.36925 -17.03701 -16.66937 -16.29768 -16.01024 -15.94454 -15.74957 -15.61851 -15.33157 -15.27954 -15.16509 -14.71013 -14.40676 -14.29460 -14.04126 -13.81436 -13.63053 -13.43423 -13.39161 -13.30999 -13.00127 -12.75829 -12.57836 -12.50888 -12.20167 -12.09447 -11.82410 -11.76854 -11.64943 -11.53717 -11.43256 -11.37719 -10.90568 -10.72350 -10.37877 -10.07094 -9.40637 -9.19100 -8.90780 -8.17075 -5.48742 0.91922 1.29527 1.42737 1.47004 1.52393 1.68516 1.76773 2.11135 2.41453 2.97691 3.07822 3.09315 3.35506 3.55280 3.78589 3.86553 3.97157 3.99166 4.07262 4.09655 4.16062 4.22102 4.29087 4.36317 4.43211 4.43963 4.44622 4.45633 4.51129 4.58774 4.70320 4.70455 4.77219 4.80123 4.88252 4.90938 4.95628 5.01048 5.02404 5.06905 5.15547 5.28097 5.34524 5.43864 5.69120 5.81997 6.04992 6.07419 6.10743 6.17872 6.58445 6.73083 6.89180 7.28380 7.60430 8.02908 9.02805 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.001507 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.784445 B =18574.044458 C =18854.668685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.382 5.382 3 C 0.063 3.937 4 C -0.221 4.221 5 C -0.041 4.041 6 H 0.106 0.894 7 C -0.129 4.129 8 C -0.181 4.181 9 H 0.144 0.856 10 C 0.539 3.461 11 O -0.586 6.586 12 N -0.712 5.712 13 C 0.131 3.869 14 C 0.053 3.947 15 N -0.540 5.540 16 C 0.050 3.950 17 C 0.145 3.855 18 N -0.623 5.623 19 C -0.251 4.251 20 H 0.052 0.948 21 C -0.034 4.034 22 N -0.957 5.957 23 Si 0.949 3.051 24 H -0.269 1.269 25 H -0.311 1.311 26 H -0.267 1.267 27 C 0.122 3.878 28 C 0.056 3.944 29 C 0.052 3.948 30 N -0.336 5.336 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.197 0.803 35 H 0.096 0.904 36 H 0.130 0.870 37 H 0.417 0.583 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.098 0.902 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.094 0.906 44 H 0.034 0.966 45 H 0.060 0.940 46 H 0.262 0.738 47 H 0.034 0.966 48 H 0.056 0.944 49 H 0.099 0.901 50 H 0.029 0.971 51 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.722 -19.677 -15.073 37.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 C -0.085 4.085 4 C -0.232 4.232 5 C -0.061 4.061 6 H 0.124 0.876 7 C -0.166 4.166 8 C -0.202 4.202 9 H 0.162 0.838 10 C 0.327 3.673 11 O -0.466 6.466 12 N -0.365 5.365 13 C 0.006 3.994 14 C -0.075 4.075 15 N -0.265 5.265 16 C -0.079 4.079 17 C 0.020 3.980 18 N -0.348 5.348 19 C -0.380 4.380 20 H 0.070 0.930 21 C -0.229 4.229 22 N -0.603 5.603 23 Si 0.778 3.222 24 H -0.195 1.195 25 H -0.240 1.240 26 H -0.192 1.192 27 C -0.003 4.003 28 C -0.073 4.073 29 C -0.133 4.133 30 N -0.158 5.158 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.214 0.786 35 H 0.115 0.885 36 H 0.148 0.852 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.112 0.888 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.117 0.883 50 H 0.047 0.953 51 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -30.095 -19.545 -15.245 38.989 hybrid contribution 1.372 0.539 0.913 1.734 sum -28.723 -19.006 -14.332 37.305 Atomic orbital electron populations 1.22177 0.72176 1.05846 1.04566 1.48779 1.07905 1.03371 1.56283 1.22754 0.90797 0.94444 1.00460 1.19330 0.93248 0.93148 1.17514 1.20068 0.87787 0.98915 0.99370 0.87596 1.23139 0.97034 1.02378 0.94098 1.22328 1.05307 0.97817 0.94776 0.83843 1.20183 0.78350 0.89759 0.78985 1.90693 1.65056 1.32595 1.58280 1.45736 1.44191 1.12130 1.34406 1.21120 0.95208 0.87173 0.95886 1.22197 0.96731 0.90972 0.97601 1.61755 1.30857 1.30049 1.03840 1.22537 0.94100 0.96365 0.94894 1.21173 0.95878 0.95259 0.85703 1.44551 1.13436 1.68232 1.08625 1.18888 0.86773 1.37509 0.94867 0.93023 1.25873 0.97560 0.99958 0.99518 1.69966 1.17651 1.52940 1.19771 0.85891 0.79826 0.77700 0.78787 1.19489 1.23971 1.19152 1.21492 0.93610 0.93445 0.91739 1.22442 0.96670 0.96450 0.91756 1.24123 0.95490 0.94732 0.98999 1.77316 1.02544 1.09847 1.26061 0.89621 0.89162 0.87036 0.78619 0.88511 0.85178 0.74632 0.92499 0.92096 0.88370 0.93410 0.95560 0.88828 0.94793 0.92160 0.92918 0.94793 0.92626 0.88265 0.95289 0.78048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 11.47 127.77 1.47 1.93 16 2 N -0.38 -5.07 4.01 -369.57 -1.48 -6.55 16 3 C 0.06 0.78 11.40 83.54 0.95 1.73 16 4 C -0.22 -3.05 5.76 -20.15 -0.12 -3.17 16 5 C -0.04 -0.58 5.76 -11.54 -0.07 -0.65 16 6 H 0.11 1.88 7.67 -2.39 -0.02 1.86 16 7 C -0.13 -1.37 9.73 30.60 0.30 -1.07 16 8 C -0.18 -2.35 5.89 -11.54 -0.07 -2.42 16 9 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 10 C 0.54 10.80 7.61 87.65 0.67 11.46 16 11 O -0.59 -17.16 16.26 -3.01 -0.05 -17.21 16 12 N -0.71 -11.61 5.56 -463.06 -2.57 -14.19 16 13 C 0.13 2.75 5.61 86.38 0.48 3.23 16 14 C 0.05 1.08 5.08 86.30 0.44 1.52 16 15 N -0.54 -15.71 4.63 -895.25 -4.14 -19.85 16 16 C 0.05 1.58 5.46 86.38 0.47 2.06 16 17 C 0.14 5.75 6.69 86.35 0.58 6.33 16 18 N -0.62 -29.89 2.82 -698.13 -1.97 -31.86 16 19 C -0.25 -14.46 10.08 84.03 0.85 -13.61 16 20 H 0.05 3.25 8.05 -2.91 -0.02 3.22 16 21 C -0.03 -2.03 5.24 84.86 0.44 -1.58 16 22 N -0.96 -60.50 13.97 21.65 0.30 -60.19 16 23 Si 0.95 46.99 24.30 68.60 1.67 48.66 16 24 H -0.27 -12.29 6.58 99.48 0.65 -11.64 16 25 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 26 H -0.27 -12.93 6.61 99.48 0.66 -12.27 16 27 C 0.12 5.18 4.35 86.35 0.38 5.56 16 28 C 0.06 1.82 5.62 86.39 0.49 2.30 16 29 C 0.05 0.72 11.35 85.23 0.97 1.69 16 30 N -0.34 -5.89 12.58 -57.03 -0.72 -6.61 16 31 H 0.09 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.20 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.13 0.72 6.97 -2.39 -0.02 0.71 16 37 H 0.42 4.03 8.47 -92.71 -0.79 3.24 16 38 H 0.06 1.37 6.40 -2.39 -0.02 1.35 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.10 1.63 7.97 -2.39 -0.02 1.61 16 41 H 0.05 0.91 8.12 -2.39 -0.02 0.89 16 42 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 2.53 6.16 -2.38 -0.01 2.52 16 44 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 46 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 47 H 0.03 1.44 6.94 -2.39 -0.02 1.43 16 48 H 0.06 2.57 4.60 -2.38 -0.01 2.55 16 49 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 50 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.20 1.57 7.19 -2.91 -0.02 1.55 16 Total: -1.00 -80.74 405.67 -0.69 -81.43 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.05 Total: 11.06 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 8.22 Total: 15.31 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -10.58 Total: -139.25 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.05 Total: -17.21 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 1.67 Total: 48.66 kcal Total: -80.74 -0.69 -81.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490507257.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.264 kcal (2) G-P(sol) polarization free energy of solvation -80.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds