Wall clock time and date at job start Wed Apr 1 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40449 * 126.82542 * 2 1 4 4 C 1.30707 * 106.79599 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52849 * 179.97438 * 4 3 2 6 6 C 1.52998 * 117.49528 * 8.77268 * 5 4 3 7 7 C 1.52997 * 117.49731 * 300.11617 * 5 4 3 8 8 N 1.33247 * 108.94761 * 0.02562 * 4 3 2 9 9 C 1.30840 * 109.82553 * 359.75887 * 8 4 3 10 10 C 1.50696 * 125.95687 * 180.23910 * 9 8 4 11 11 C 1.50706 * 109.47107 * 270.16559 * 10 9 8 12 12 O 1.21285 * 119.99776 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99728 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99391 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46700 * 179.97438 * 14 13 11 16 16 H 1.08997 * 109.59065 * 299.93533 * 15 14 13 17 17 C 1.53191 * 109.58618 * 179.50545 * 15 14 13 18 18 C 1.53034 * 109.31633 * 185.58112 * 17 15 14 19 19 C 1.53044 * 109.53933 * 61.36304 * 18 17 15 20 20 C 1.53196 * 109.31510 * 298.64216 * 19 18 17 21 21 N 1.46924 * 108.77448 * 54.62810 * 20 19 18 22 22 C 1.36935 * 120.62871 * 126.41789 * 21 20 19 23 23 H 1.08000 * 119.99973 * 210.96763 * 22 21 20 24 24 C 1.38816 * 120.00268 * 30.96437 * 22 21 20 25 25 N 1.31620 * 119.99312 * 14.30002 * 24 22 21 26 26 Si 1.86795 * 120.00373 * 194.29992 * 24 22 21 27 27 H 1.48508 * 109.47154 * 59.99776 * 26 24 22 28 28 H 1.48494 * 109.47243 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46930 * 299.99976 * 26 24 22 30 30 H 1.09004 * 109.46857 * 90.02397 * 1 2 3 31 31 H 1.08996 * 109.47097 * 330.02377 * 1 2 3 32 32 H 1.08992 * 109.47099 * 210.02300 * 1 2 3 33 33 H 1.08995 * 115.54758 * 154.44446 * 5 4 3 34 34 H 1.08996 * 117.50398 * 0.02562 * 6 5 4 35 35 H 1.09007 * 117.49716 * 145.02112 * 6 5 4 36 36 H 1.09002 * 117.49835 * 214.98035 * 7 5 4 37 37 H 1.09001 * 117.49996 * 359.97438 * 7 5 4 38 38 H 1.08992 * 109.47616 * 30.17204 * 10 9 8 39 39 H 1.09004 * 109.46496 * 150.17261 * 10 9 8 40 40 H 0.96995 * 120.00379 * 0.02562 * 13 11 10 41 41 H 1.08992 * 109.47461 * 300.00366 * 14 13 11 42 42 H 1.09004 * 109.47154 * 60.00731 * 14 13 11 43 43 H 1.08999 * 109.50003 * 305.53544 * 17 15 14 44 44 H 1.09006 * 109.49572 * 65.62632 * 17 15 14 45 45 H 1.09009 * 109.45990 * 301.35010 * 18 17 15 46 46 H 1.08994 * 109.45423 * 181.38129 * 18 17 15 47 47 H 1.08997 * 109.50164 * 178.68634 * 19 18 17 48 48 H 1.09003 * 109.49288 * 58.58968 * 19 18 17 49 49 H 1.09005 * 109.58189 * 294.84786 * 20 19 18 50 50 H 1.08995 * 109.70245 * 174.48718 * 20 19 18 51 51 H 0.97002 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1242 0.0000 4 6 3.5348 0.6766 0.0006 5 6 4.7777 1.5289 0.0002 6 6 4.6016 3.0347 0.2061 7 6 4.9754 2.4892 -1.1743 8 7 3.5097 -0.6557 0.0003 9 6 2.2707 -1.0761 0.0048 10 6 1.8248 -2.5156 0.0112 11 6 1.6767 -3.0019 -1.4075 12 8 1.9107 -2.2534 -2.3327 13 7 1.2842 -4.2686 -1.6481 14 6 1.1408 -4.7415 -3.0272 15 6 0.6879 -6.2030 -3.0207 16 1 1.4293 -6.8130 -2.5048 17 6 0.5252 -6.6966 -4.4618 18 6 -0.0600 -8.1106 -4.4494 19 6 -1.4399 -8.0877 -3.7880 20 6 -1.2996 -7.6098 -2.3393 21 7 -0.6061 -6.3145 -2.3337 22 6 -1.1551 -5.2319 -1.6999 23 1 -0.9679 -4.2357 -2.0726 24 6 -1.9523 -5.4149 -0.5783 25 7 -1.9576 -6.5752 0.0430 26 14 -3.0175 -4.0145 0.0491 27 1 -3.9761 -3.6088 -1.0102 28 1 -3.7677 -4.4628 1.2496 29 1 -2.1559 -2.8589 0.4060 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3633 0.8902 0.5134 32 1 -0.3633 -0.8897 0.5142 33 1 5.6670 1.0634 0.4249 34 1 3.5869 3.4088 0.3423 35 1 5.3754 3.5600 0.7661 36 1 5.9949 2.6558 -1.5221 37 1 4.2067 2.5042 -1.9470 38 1 2.5670 -3.1236 0.5282 39 1 0.8668 -2.5968 0.5250 40 1 1.0966 -4.8671 -0.9082 41 1 0.3991 -4.1331 -3.5447 42 1 2.0990 -4.6608 -3.5405 43 1 -0.1470 -6.0294 -5.0012 44 1 1.4978 -6.7096 -4.9539 45 1 0.6005 -8.7721 -3.8887 46 1 -0.1538 -8.4735 -5.4729 47 1 -1.8661 -9.0908 -3.8005 48 1 -2.0937 -7.4074 -4.3338 49 1 -0.7207 -8.3366 -1.7693 50 1 -2.2872 -7.4974 -1.8921 51 1 -2.5150 -6.7032 0.8265 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491236238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:02 Heat of formation + Delta-G solvation = 79.047308 kcal Electronic energy + Delta-G solvation = -31490.770299 eV Core-core repulsion = 27427.644019 eV Total energy + Delta-G solvation = -4063.126280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.27960 -40.76936 -39.29667 -38.17058 -35.72346 -34.94198 -34.85238 -33.77233 -32.33739 -31.65328 -30.06901 -28.37207 -27.49967 -26.23531 -24.76127 -23.80468 -23.31679 -22.63401 -22.00851 -21.23129 -20.83904 -20.58886 -18.68048 -18.12106 -17.85318 -17.36418 -17.02746 -16.64387 -16.38227 -16.23139 -15.77011 -15.65342 -15.51134 -14.90368 -14.81140 -14.60927 -14.50820 -14.40970 -14.19753 -14.02257 -13.61756 -13.57861 -13.15669 -13.07822 -12.84246 -12.76772 -12.62872 -12.53615 -12.41585 -12.28885 -11.99643 -11.89471 -11.77991 -11.52151 -11.48448 -11.21964 -11.08868 -11.08342 -10.96568 -10.70588 -10.46573 -10.21654 -9.86086 -8.51990 -7.76946 -5.24678 0.42820 1.24617 1.42934 1.54806 1.57070 1.61606 1.65281 2.36405 2.54422 2.79991 2.99622 3.33213 3.38047 3.48370 3.60838 3.87682 3.90975 3.96419 4.02307 4.05692 4.16861 4.20322 4.23304 4.28896 4.35951 4.44977 4.49088 4.56697 4.58624 4.67511 4.73864 4.78350 4.88519 4.89215 5.01124 5.10697 5.15985 5.23016 5.23330 5.24028 5.29445 5.37738 5.38893 5.47774 5.61003 5.66007 5.69754 5.79037 5.86150 6.48656 6.67519 7.01621 7.23217 7.29468 7.92849 8.47932 9.27359 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.002982 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.939065 B = 9386.991137 C =10807.212432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.376 5.376 3 N -0.338 5.338 4 C 0.239 3.761 5 C -0.091 4.091 6 C -0.143 4.143 7 C -0.154 4.154 8 N -0.556 5.556 9 C 0.300 3.700 10 C -0.063 4.063 11 C 0.518 3.482 12 O -0.590 6.590 13 N -0.686 5.686 14 C 0.142 3.858 15 C 0.160 3.840 16 H 0.035 0.965 17 C -0.123 4.123 18 C -0.103 4.103 19 C -0.136 4.136 20 C 0.178 3.822 21 N -0.600 5.600 22 C -0.240 4.240 23 H 0.065 0.935 24 C -0.033 4.033 25 N -0.925 5.925 26 Si 0.936 3.064 27 H -0.296 1.296 28 H -0.301 1.301 29 H -0.256 1.256 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.153 0.847 39 H 0.137 0.863 40 H 0.416 0.584 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.002 0.998 50 H 0.049 0.951 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.780 8.227 -0.300 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.166 5.166 3 N -0.167 5.167 4 C -0.042 4.042 5 C -0.112 4.112 6 C -0.181 4.181 7 C -0.193 4.193 8 N -0.284 5.284 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.303 3.697 12 O -0.472 6.472 13 N -0.336 5.336 14 C 0.018 3.982 15 C 0.054 3.946 16 H 0.053 0.947 17 C -0.163 4.163 18 C -0.140 4.140 19 C -0.175 4.175 20 C 0.053 3.947 21 N -0.325 5.325 22 C -0.370 4.370 23 H 0.082 0.918 24 C -0.230 4.230 25 N -0.571 5.571 26 Si 0.765 3.235 27 H -0.223 1.223 28 H -0.228 1.228 29 H -0.180 1.180 30 H 0.096 0.904 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.160 0.840 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.094 0.906 38 H 0.170 0.830 39 H 0.155 0.845 40 H 0.254 0.746 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.020 0.980 50 H 0.068 0.932 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.812 9.229 -0.794 12.785 hybrid contribution -1.614 -0.149 0.738 1.781 sum 7.198 9.080 -0.056 11.587 Atomic orbital electron populations 1.22265 0.72145 1.06532 1.04584 1.50274 1.08801 1.03498 1.54014 1.77798 1.01667 1.08403 1.28838 1.23758 0.93479 0.89424 0.97521 1.20282 0.92555 0.90622 1.07744 1.23098 1.03907 0.91973 0.99077 1.23092 1.04034 1.00775 0.91354 1.70207 1.20282 1.11588 1.26354 1.23665 0.86085 0.92299 0.95624 1.20277 1.06834 0.87112 0.96311 1.20277 0.76731 0.82235 0.90482 1.90689 1.53152 1.56329 1.47051 1.45912 1.65451 1.12111 1.10093 1.21223 0.99524 0.94713 0.82730 1.20871 0.87708 0.92762 0.93218 0.94740 1.21897 1.01079 0.97068 0.96209 1.21342 0.95979 0.96309 1.00401 1.22058 0.97484 0.99947 0.98017 1.20566 0.96452 0.85594 0.92110 1.44244 1.18112 1.08289 1.61855 1.19221 1.25719 0.87692 1.04375 0.91757 1.25553 1.02688 0.98076 0.96646 1.70125 1.41837 1.24757 1.20381 0.85838 0.79874 0.80996 0.76783 1.22346 1.22817 1.18031 0.90369 0.86914 0.87472 0.83957 0.89287 0.84889 0.85115 0.90617 0.82975 0.84490 0.74571 0.93619 0.91298 0.92935 0.90212 0.92372 0.90986 0.91907 0.93732 0.98030 0.93234 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.10 11.33 127.77 1.45 3.55 16 2 N -0.38 -12.04 4.04 -359.88 -1.45 -13.49 16 3 N -0.34 -11.32 12.24 -51.33 -0.63 -11.95 16 4 C 0.24 7.84 7.69 138.63 1.07 8.91 16 5 C -0.09 -2.17 6.33 -11.54 -0.07 -2.25 16 6 C -0.14 -2.58 10.14 30.62 0.31 -2.27 16 7 C -0.15 -3.03 10.24 30.62 0.31 -2.72 16 8 N -0.56 -19.75 11.19 -179.72 -2.01 -21.76 16 9 C 0.30 9.96 6.48 138.22 0.90 10.85 16 10 C -0.06 -1.80 6.02 29.10 0.18 -1.63 16 11 C 0.52 18.08 7.82 87.66 0.69 18.77 16 12 O -0.59 -25.13 16.03 -3.05 -0.05 -25.17 16 13 N -0.69 -23.60 3.84 -463.04 -1.78 -25.38 16 14 C 0.14 4.97 4.43 86.38 0.38 5.35 16 15 C 0.16 5.65 3.01 44.98 0.14 5.79 16 16 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 17 C -0.12 -3.67 5.37 30.67 0.16 -3.51 16 18 C -0.10 -2.95 5.88 30.62 0.18 -2.77 16 19 C -0.14 -4.66 6.08 30.67 0.19 -4.47 16 20 C 0.18 7.69 5.27 86.36 0.46 8.15 16 21 N -0.60 -25.62 2.97 -675.22 -2.01 -27.63 16 22 C -0.24 -11.04 6.97 84.03 0.59 -10.45 16 23 H 0.06 3.01 5.85 -2.91 -0.02 2.99 16 24 C -0.03 -1.59 4.96 84.86 0.42 -1.17 16 25 N -0.93 -47.98 11.24 21.65 0.24 -47.73 16 26 Si 0.94 39.07 29.58 68.60 2.03 41.10 16 27 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 28 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 29 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 30 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.11 2.31 7.10 -2.39 -0.02 2.29 16 33 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.09 1.87 7.88 -2.39 -0.02 1.85 16 35 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.15 3.56 8.14 -2.39 -0.02 3.54 16 39 H 0.14 3.32 7.12 -2.38 -0.02 3.30 16 40 H 0.42 14.60 7.39 -92.71 -0.69 13.92 16 41 H 0.05 1.79 7.42 -2.39 -0.02 1.77 16 42 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 50 H 0.05 2.47 6.19 -2.39 -0.01 2.46 16 51 H 0.25 12.78 8.31 -92.71 -0.77 12.01 16 Total: -1.00 -66.80 408.01 1.93 -64.87 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.25 Total: 37.01 kcal Atomic # 6 Polarization: 22.80 SS G_CDS: 7.33 Total: 30.13 kcal Atomic # 7 Polarization: -140.31 SS G_CDS: -7.63 Total: -147.94 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.05 Total: -25.17 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -66.80 1.93 -64.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491236238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.916 kcal (2) G-P(sol) polarization free energy of solvation -66.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds