Wall clock time and date at job start Wed Apr 1 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40447 * 126.82437 * 2 1 4 4 C 1.30718 * 106.79063 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52476 * 180.02562 * 4 3 2 6 6 C 1.52999 * 117.49747 * 8.74641 * 5 4 3 7 7 C 1.53007 * 117.49777 * 300.08860 * 5 4 3 8 8 N 1.33241 * 108.94820 * 0.02562 * 4 3 2 9 9 C 1.30834 * 109.82716 * 359.97438 * 8 4 3 10 10 C 1.50694 * 125.95694 * 180.02562 * 9 8 4 11 11 C 1.50707 * 109.47049 * 89.97780 * 10 9 8 12 12 O 1.21280 * 119.99637 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00257 * 180.02562 * 11 10 9 14 14 C 1.47020 * 125.64525 * 359.68698 * 13 11 10 15 15 C 1.54338 * 107.26413 * 178.85316 * 14 13 11 16 16 C 1.55157 * 103.02124 * 338.14147 * 15 14 13 17 17 H 1.08997 * 111.00282 * 277.23397 * 16 15 14 18 18 C 1.53001 * 111.03703 * 153.39473 * 16 15 14 19 19 C 1.52999 * 109.46964 * 72.78369 * 18 16 15 20 20 N 1.46503 * 109.47036 * 179.97438 * 19 18 16 21 21 C 1.36933 * 120.00263 * 180.02562 * 20 19 18 22 22 H 1.08004 * 119.99501 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00472 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99560 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00296 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47376 * 89.99502 * 25 23 21 27 27 H 1.48506 * 109.47242 * 209.99923 * 25 23 21 28 28 H 1.48501 * 109.46986 * 329.99425 * 25 23 21 29 29 C 1.47422 * 125.65156 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47090 * 269.99837 * 1 2 3 31 31 H 1.09001 * 109.46754 * 29.99749 * 1 2 3 32 32 H 1.08993 * 109.47230 * 149.99590 * 1 2 3 33 33 H 1.08996 * 115.55368 * 154.42042 * 5 4 3 34 34 H 1.09001 * 117.50017 * 0.02562 * 6 5 4 35 35 H 1.09008 * 117.49676 * 145.02180 * 6 5 4 36 36 H 1.08994 * 117.50067 * 214.97589 * 7 5 4 37 37 H 1.09002 * 117.49553 * 0.02562 * 7 5 4 38 38 H 1.09004 * 109.47263 * 209.97548 * 10 9 8 39 39 H 1.09001 * 109.47979 * 329.97713 * 10 9 8 40 40 H 1.09002 * 109.88362 * 298.39796 * 14 13 11 41 41 H 1.08998 * 109.88218 * 59.56535 * 14 13 11 42 42 H 1.08999 * 110.85015 * 219.67383 * 15 14 13 43 43 H 1.09003 * 110.66538 * 96.52505 * 15 14 13 44 44 H 1.09000 * 109.46956 * 192.79105 * 18 16 15 45 45 H 1.09002 * 109.46837 * 312.78764 * 18 16 15 46 46 H 1.08998 * 109.47369 * 300.00118 * 19 18 16 47 47 H 1.09002 * 109.47020 * 60.00508 * 19 18 16 48 48 H 0.97002 * 119.99701 * 359.97438 * 20 19 18 49 49 H 0.97003 * 119.99574 * 180.02562 * 24 23 21 50 50 H 1.08997 * 110.36227 * 322.92551 * 29 13 11 51 51 H 1.09003 * 110.36625 * 85.24587 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0345 0.2078 7 6 4.9761 2.4896 -1.1728 8 7 3.5096 -0.6557 0.0003 9 6 2.2706 -1.0761 0.0002 10 6 1.8246 -2.5155 0.0005 11 6 1.6762 -2.9951 1.4215 12 8 1.9092 -2.2420 2.3431 13 7 1.2845 -4.2610 1.6681 14 6 0.9648 -5.2726 0.6503 15 6 0.5963 -6.5724 1.3964 16 6 1.2679 -6.3825 2.7821 17 1 2.3219 -6.6581 2.7464 18 6 0.5323 -7.1779 3.8625 19 6 0.8231 -8.6694 3.6847 20 7 0.1193 -9.4309 4.7197 21 6 0.2313 -10.7950 4.7614 22 1 0.8381 -11.3095 4.0310 23 6 -0.4360 -11.5166 5.7416 24 7 -1.1760 -10.8895 6.6313 25 14 -0.2827 -13.3773 5.7989 26 1 0.8695 -13.7529 6.6571 27 1 -1.5284 -13.9597 6.3597 28 1 -0.0674 -13.8988 4.4252 29 6 1.0991 -4.8584 3.0030 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 5.6668 1.0631 0.4263 34 1 3.5867 3.4086 0.3436 35 1 5.3751 3.5595 0.7684 36 1 5.9957 2.6564 -1.5199 37 1 4.2074 2.5055 -1.9454 38 1 0.8668 -2.5993 -0.5132 39 1 2.5670 -3.1262 -0.5134 40 1 0.1213 -4.9374 0.0467 41 1 1.8328 -5.4458 0.0143 42 1 1.0068 -7.4430 0.8849 43 1 -0.4850 -6.6626 1.5009 44 1 0.8735 -6.8558 4.8464 45 1 -0.5401 -7.0038 3.7750 46 1 0.4819 -8.9914 2.7009 47 1 1.8956 -8.8434 3.7723 48 1 -0.4254 -8.9687 5.3758 49 1 -1.6420 -11.3937 7.3166 50 1 1.8579 -4.4888 3.6927 51 1 0.1011 -4.6380 3.3819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501652063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:03 Heat of formation + Delta-G solvation = 89.148691 kcal Electronic energy + Delta-G solvation = -29358.402203 eV Core-core repulsion = 25295.713952 eV Total energy + Delta-G solvation = -4062.688252 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.50429 -40.30339 -38.05895 -37.51617 -35.20756 -34.24819 -33.33014 -32.72961 -30.99894 -29.72336 -29.37854 -27.81466 -27.04397 -24.16158 -24.01772 -23.15359 -22.75496 -21.73858 -21.07550 -20.27671 -20.24539 -19.34048 -17.66726 -17.43112 -17.12654 -16.35421 -16.21303 -15.97206 -15.59518 -15.07459 -14.80010 -14.71015 -14.29387 -14.11769 -13.88376 -13.72497 -13.60340 -13.42787 -13.20659 -13.01008 -12.84462 -12.53476 -12.45977 -12.24965 -12.04662 -11.85293 -11.70054 -11.37573 -11.25621 -11.09915 -10.89121 -10.84815 -10.69581 -10.52929 -10.37762 -10.31412 -10.23544 -10.03836 -9.92606 -9.70330 -9.48145 -8.92169 -8.88036 -6.93369 -5.77763 -3.06562 1.20901 1.91878 2.26419 2.35900 2.76318 3.42648 3.43061 3.47577 3.49329 3.60443 3.97334 4.04334 4.14454 4.37093 4.40785 4.47943 4.54778 4.59506 4.62444 4.68867 4.75593 4.78403 4.85507 4.98140 5.01240 5.17102 5.20217 5.26241 5.31632 5.43658 5.52213 5.56925 5.61693 5.71267 5.72055 5.77713 5.78371 5.82045 5.99227 6.00852 6.05579 6.13791 6.21471 6.33156 6.35047 6.42869 6.81051 6.85698 7.18268 7.68397 7.80015 7.83207 8.41328 9.52264 10.10765 10.44827 11.45187 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.001472 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.114696 B =19014.028417 C =19167.962393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.372 5.372 3 N -0.314 5.314 4 C 0.257 3.743 5 C -0.071 4.071 6 C -0.160 4.160 7 C -0.159 4.159 8 N -0.526 5.526 9 C 0.301 3.699 10 C -0.061 4.061 11 C 0.533 3.467 12 O -0.529 6.529 13 N -0.615 5.615 14 C 0.095 3.905 15 C -0.127 4.127 16 C -0.094 4.094 17 H 0.086 0.914 18 C -0.116 4.116 19 C 0.155 3.845 20 N -0.735 5.735 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.110 3.890 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.019 0.981 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.079 0.921 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 25.241 -20.115 32.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.162 5.162 3 N -0.143 5.143 4 C -0.025 4.025 5 C -0.092 4.092 6 C -0.198 4.198 7 C -0.197 4.197 8 N -0.253 5.253 9 C 0.024 3.976 10 C -0.103 4.103 11 C 0.319 3.681 12 O -0.405 6.405 13 N -0.350 5.350 14 C -0.027 4.027 15 C -0.165 4.165 16 C -0.114 4.114 17 H 0.105 0.895 18 C -0.154 4.154 19 C 0.027 3.973 20 N -0.379 5.379 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.012 4.012 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.150 0.850 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.098 0.902 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.818 26.106 -19.685 33.209 hybrid contribution -0.485 -1.254 0.335 1.385 sum 5.333 24.852 -19.350 31.945 Atomic orbital electron populations 1.21978 0.73783 1.04723 1.04279 1.50062 1.07810 1.03736 1.54591 1.77931 1.01329 1.07362 1.27638 1.23040 0.92418 0.89129 0.97886 1.20063 0.93452 0.89919 1.05747 1.23048 1.03823 0.93665 0.99294 1.23038 1.03185 1.01767 0.91725 1.70215 1.19330 1.10941 1.24783 1.23244 0.86195 0.91312 0.96862 1.20140 1.04922 0.88378 0.96880 1.19681 0.77326 0.80797 0.90259 1.90789 1.49689 1.53906 1.46081 1.48467 1.66856 1.10572 1.09091 1.22205 1.00458 0.88778 0.91305 1.22747 1.02044 0.95987 0.95721 1.22350 1.00980 0.92872 0.95165 0.89526 1.21672 0.99991 0.96121 0.97604 1.20622 0.95307 0.88648 0.92693 1.42373 1.57783 1.03942 1.33793 1.19233 1.24157 0.83102 1.10657 0.91197 1.24747 1.00141 0.98004 0.98141 1.69664 1.35349 1.34414 1.18809 0.86186 0.76991 0.85520 0.77473 1.21708 1.21761 1.20764 1.22395 1.02092 0.92683 0.83996 0.89880 0.88720 0.89127 0.85096 0.87882 0.87806 0.87715 0.88630 0.86628 0.84972 0.91212 0.91007 0.89408 0.90004 0.91486 0.91551 0.96297 0.96504 0.78320 0.93518 0.90242 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 11.33 59.84 0.68 1.26 16 2 N -0.37 -4.02 4.04 -65.11 -0.26 -4.29 16 3 N -0.31 -3.98 12.24 32.42 0.40 -3.58 16 4 C 0.26 3.27 7.69 -156.85 -1.21 2.06 16 5 C -0.07 -0.67 6.33 -91.77 -0.58 -1.26 16 6 C -0.16 -1.19 10.14 -26.69 -0.27 -1.47 16 7 C -0.16 -1.11 10.24 -26.69 -0.27 -1.39 16 8 N -0.53 -7.15 11.19 -8.16 -0.09 -7.24 16 9 C 0.30 3.43 6.48 -155.70 -1.01 2.42 16 10 C -0.06 -0.47 5.22 -29.03 -0.15 -0.63 16 11 C 0.53 5.99 7.84 -10.98 -0.09 5.90 16 12 O -0.53 -8.44 16.29 5.56 0.09 -8.35 16 13 N -0.62 -6.07 3.33 -170.50 -0.57 -6.63 16 14 C 0.10 0.66 6.49 -3.06 -0.02 0.64 16 15 C -0.13 -1.12 5.90 -24.89 -0.15 -1.26 16 16 C -0.09 -1.04 3.01 -88.46 -0.27 -1.31 16 17 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 18 C -0.12 -1.68 4.84 -26.73 -0.13 -1.81 16 19 C 0.15 2.93 6.16 -4.04 -0.02 2.90 16 20 N -0.73 -18.36 5.60 -59.91 -0.34 -18.70 16 21 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 25 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.11 1.24 6.37 -2.52 -0.02 1.22 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.28 7.11 -51.93 -0.37 -0.09 16 33 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 0.87 7.88 -51.93 -0.41 0.46 16 35 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.12 0.45 7.13 -51.93 -0.37 0.08 16 39 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.74 7.91 -51.93 -0.41 0.33 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 46 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 10.08 7.67 -40.82 -0.31 9.77 16 49 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 51 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 421.61 15.07 6.35 6.35 Total: -1.00 -37.79 421.61 -11.03 -48.82 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.57 Total: 3.89 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -3.75 Total: -0.06 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -0.14 Total: -67.86 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -37.79 -11.03 -48.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501652063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.967 kcal (2) G-P(sol) polarization free energy of solvation -37.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds