Wall clock time and date at job start Wed Apr 1 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40447 * 126.82437 * 2 1 4 4 C 1.30718 * 106.79063 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.52476 * 180.02562 * 4 3 2 6 6 C 1.52999 * 117.49747 * 8.74641 * 5 4 3 7 7 C 1.53007 * 117.49777 * 300.08860 * 5 4 3 8 8 N 1.33241 * 108.94820 * 0.02562 * 4 3 2 9 9 C 1.30834 * 109.82716 * 359.97438 * 8 4 3 10 10 C 1.50694 * 125.95694 * 180.02562 * 9 8 4 11 11 C 1.50707 * 109.47049 * 89.97780 * 10 9 8 12 12 O 1.21280 * 119.99637 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00257 * 180.02562 * 11 10 9 14 14 C 1.47020 * 125.64525 * 359.68698 * 13 11 10 15 15 C 1.54338 * 107.26413 * 178.85316 * 14 13 11 16 16 C 1.55157 * 103.02124 * 338.14147 * 15 14 13 17 17 H 1.08997 * 111.00282 * 277.23397 * 16 15 14 18 18 C 1.53001 * 111.03703 * 153.39473 * 16 15 14 19 19 C 1.52999 * 109.46964 * 72.78369 * 18 16 15 20 20 N 1.46503 * 109.47036 * 179.97438 * 19 18 16 21 21 C 1.36933 * 120.00263 * 180.02562 * 20 19 18 22 22 H 1.08004 * 119.99501 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00472 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99560 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00296 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47376 * 89.99502 * 25 23 21 27 27 H 1.48506 * 109.47242 * 209.99923 * 25 23 21 28 28 H 1.48501 * 109.46986 * 329.99425 * 25 23 21 29 29 C 1.47422 * 125.65156 * 180.02562 * 13 11 10 30 30 H 1.09000 * 109.47090 * 269.99837 * 1 2 3 31 31 H 1.09001 * 109.46754 * 29.99749 * 1 2 3 32 32 H 1.08993 * 109.47230 * 149.99590 * 1 2 3 33 33 H 1.08996 * 115.55368 * 154.42042 * 5 4 3 34 34 H 1.09001 * 117.50017 * 0.02562 * 6 5 4 35 35 H 1.09008 * 117.49676 * 145.02180 * 6 5 4 36 36 H 1.08994 * 117.50067 * 214.97589 * 7 5 4 37 37 H 1.09002 * 117.49553 * 0.02562 * 7 5 4 38 38 H 1.09004 * 109.47263 * 209.97548 * 10 9 8 39 39 H 1.09001 * 109.47979 * 329.97713 * 10 9 8 40 40 H 1.09002 * 109.88362 * 298.39796 * 14 13 11 41 41 H 1.08998 * 109.88218 * 59.56535 * 14 13 11 42 42 H 1.08999 * 110.85015 * 219.67383 * 15 14 13 43 43 H 1.09003 * 110.66538 * 96.52505 * 15 14 13 44 44 H 1.09000 * 109.46956 * 192.79105 * 18 16 15 45 45 H 1.09002 * 109.46837 * 312.78764 * 18 16 15 46 46 H 1.08998 * 109.47369 * 300.00118 * 19 18 16 47 47 H 1.09002 * 109.47020 * 60.00508 * 19 18 16 48 48 H 0.97002 * 119.99701 * 359.97438 * 20 19 18 49 49 H 0.97003 * 119.99574 * 180.02562 * 24 23 21 50 50 H 1.08997 * 110.36227 * 322.92551 * 29 13 11 51 51 H 1.09003 * 110.36625 * 85.24587 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1242 0.0000 4 6 3.5348 0.6764 0.0006 5 6 4.7777 1.5288 0.0013 6 6 4.6015 3.0345 0.2078 7 6 4.9761 2.4896 -1.1728 8 7 3.5096 -0.6557 0.0003 9 6 2.2706 -1.0761 0.0002 10 6 1.8246 -2.5155 0.0005 11 6 1.6762 -2.9951 1.4215 12 8 1.9092 -2.2420 2.3431 13 7 1.2845 -4.2610 1.6681 14 6 0.9648 -5.2726 0.6503 15 6 0.5963 -6.5724 1.3964 16 6 1.2679 -6.3825 2.7821 17 1 2.3219 -6.6581 2.7464 18 6 0.5323 -7.1779 3.8625 19 6 0.8231 -8.6694 3.6847 20 7 0.1193 -9.4309 4.7197 21 6 0.2313 -10.7950 4.7614 22 1 0.8381 -11.3095 4.0310 23 6 -0.4360 -11.5166 5.7416 24 7 -1.1760 -10.8895 6.6313 25 14 -0.2827 -13.3773 5.7989 26 1 0.8695 -13.7529 6.6571 27 1 -1.5284 -13.9597 6.3597 28 1 -0.0674 -13.8988 4.4252 29 6 1.0991 -4.8584 3.0030 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 5.6668 1.0631 0.4263 34 1 3.5867 3.4086 0.3436 35 1 5.3751 3.5595 0.7684 36 1 5.9957 2.6564 -1.5199 37 1 4.2074 2.5055 -1.9454 38 1 0.8668 -2.5993 -0.5132 39 1 2.5670 -3.1262 -0.5134 40 1 0.1213 -4.9374 0.0467 41 1 1.8328 -5.4458 0.0143 42 1 1.0068 -7.4430 0.8849 43 1 -0.4850 -6.6626 1.5009 44 1 0.8735 -6.8558 4.8464 45 1 -0.5401 -7.0038 3.7750 46 1 0.4819 -8.9914 2.7009 47 1 1.8956 -8.8434 3.7723 48 1 -0.4254 -8.9687 5.3758 49 1 -1.6420 -11.3937 7.3166 50 1 1.8579 -4.4888 3.6927 51 1 0.1011 -4.6380 3.3819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501652063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:02 Heat of formation + Delta-G solvation = 64.453859 kcal Electronic energy + Delta-G solvation = -29359.473052 eV Core-core repulsion = 25295.713952 eV Total energy + Delta-G solvation = -4063.759100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.29004 -41.14439 -38.98149 -38.16636 -36.82393 -34.95128 -34.61831 -33.72543 -32.57577 -30.57020 -30.32272 -28.72587 -28.05612 -25.73534 -24.77909 -24.12996 -23.31890 -23.11916 -21.97348 -21.24099 -21.02937 -20.11293 -19.12534 -18.42762 -18.11719 -17.23917 -17.01167 -16.78038 -16.58537 -16.29413 -15.89012 -15.58213 -15.38422 -15.26179 -15.12563 -14.79235 -14.43711 -14.34007 -14.21454 -13.93420 -13.78317 -13.35265 -13.17337 -13.13290 -13.06267 -12.82571 -12.75125 -12.72933 -12.41907 -12.32333 -12.16217 -11.94105 -11.90502 -11.60918 -11.52167 -11.49386 -11.47731 -11.22015 -11.08692 -10.90018 -10.77151 -10.21691 -9.71693 -8.98042 -7.94224 -5.23001 0.41526 1.27162 1.45979 1.48734 1.50577 1.56356 1.58937 2.00025 2.57535 2.76048 2.96103 3.29901 3.37269 3.40097 3.47408 3.64429 3.73771 3.83869 3.86679 3.96043 4.04760 4.19792 4.20806 4.23923 4.35219 4.36186 4.40249 4.49211 4.55162 4.57783 4.62417 4.66867 4.72850 4.81002 4.88219 4.88324 4.91806 5.01491 5.09128 5.11150 5.21178 5.25219 5.25538 5.33109 5.34219 5.41802 5.49186 5.51880 5.75052 6.28598 6.42234 6.98957 7.01404 7.34488 8.12248 8.33669 9.29535 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031843 B = 0.001472 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.114696 B =19014.028417 C =19167.962393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.375 5.375 3 N -0.341 5.341 4 C 0.241 3.759 5 C -0.098 4.098 6 C -0.154 4.154 7 C -0.140 4.140 8 N -0.563 5.563 9 C 0.292 3.708 10 C -0.052 4.052 11 C 0.532 3.468 12 O -0.587 6.587 13 N -0.611 5.611 14 C 0.095 3.905 15 C -0.125 4.125 16 C -0.086 4.086 17 H 0.086 0.914 18 C -0.103 4.103 19 C 0.153 3.847 20 N -0.751 5.751 21 C -0.246 4.246 22 H 0.078 0.922 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.974 3.026 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.266 1.266 29 C 0.112 3.888 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.088 0.912 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.032 0.968 47 H 0.015 0.985 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.057 0.943 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 24.820 -23.078 34.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.165 5.165 3 N -0.170 5.170 4 C -0.040 4.040 5 C -0.118 4.118 6 C -0.191 4.191 7 C -0.178 4.178 8 N -0.291 5.291 9 C 0.015 3.985 10 C -0.093 4.093 11 C 0.320 3.680 12 O -0.468 6.468 13 N -0.344 5.344 14 C -0.026 4.026 15 C -0.163 4.163 16 C -0.106 4.106 17 H 0.104 0.896 18 C -0.141 4.141 19 C 0.027 3.973 20 N -0.393 5.393 21 C -0.377 4.377 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.803 3.197 26 H -0.216 1.216 27 H -0.222 1.222 28 H -0.191 1.191 29 C -0.011 4.011 30 H 0.095 0.905 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.106 0.894 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.033 0.967 48 H 0.204 0.796 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.819 25.671 -22.717 34.769 hybrid contribution -0.493 -1.107 1.260 1.748 sum 5.326 24.564 -21.457 33.047 Atomic orbital electron populations 1.22361 0.71450 1.07215 1.04628 1.50350 1.09134 1.03178 1.53840 1.77834 1.01726 1.08834 1.28580 1.23596 0.93329 0.89422 0.97676 1.20256 0.92721 0.90649 1.08213 1.23090 1.03762 0.92259 1.00022 1.23097 1.04248 0.99535 0.90961 1.70189 1.21051 1.11592 1.26246 1.23849 0.85926 0.92756 0.95948 1.20324 1.07941 0.86284 0.94756 1.20243 0.76191 0.80482 0.91111 1.90772 1.52354 1.55532 1.48107 1.48508 1.66002 1.10769 1.09136 1.22458 1.02909 0.86730 0.90539 1.22761 1.01791 0.97641 0.94064 1.22172 1.00676 0.92072 0.95669 0.89610 1.21498 1.00438 0.93789 0.98358 1.20810 0.94392 0.90577 0.91498 1.42649 1.58155 1.03629 1.34901 1.19674 1.23213 0.84610 1.10252 0.90451 1.25587 1.00544 1.02554 0.98266 1.69825 1.36769 1.35925 1.19683 0.85133 0.76462 0.80168 0.77974 1.21603 1.22215 1.19119 1.22221 1.01291 0.92729 0.84852 0.90514 0.87607 0.85381 0.84931 0.89247 0.85747 0.85295 0.89350 0.81945 0.82783 0.87755 0.88601 0.88492 0.90052 0.92894 0.91524 0.94978 0.96682 0.79616 0.94068 0.92457 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 11.33 127.77 1.45 2.33 16 2 N -0.38 -7.84 4.04 -359.90 -1.45 -9.29 16 3 N -0.34 -8.78 12.24 -51.33 -0.63 -9.40 16 4 C 0.24 6.28 7.69 138.63 1.07 7.35 16 5 C -0.10 -1.88 6.33 -11.54 -0.07 -1.95 16 6 C -0.15 -2.24 10.14 30.62 0.31 -1.93 16 7 C -0.14 -1.85 10.24 30.62 0.31 -1.54 16 8 N -0.56 -15.38 11.19 -179.73 -2.01 -17.39 16 9 C 0.29 6.34 6.48 138.22 0.89 7.24 16 10 C -0.05 -0.65 5.22 29.10 0.15 -0.49 16 11 C 0.53 11.07 7.84 87.66 0.69 11.76 16 12 O -0.59 -19.02 16.29 -3.03 -0.05 -19.06 16 13 N -0.61 -10.63 3.33 -811.73 -2.70 -13.33 16 14 C 0.09 0.89 6.49 86.73 0.56 1.45 16 15 C -0.12 -1.79 5.90 31.79 0.19 -1.60 16 16 C -0.09 -1.79 3.01 -9.39 -0.03 -1.82 16 17 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 18 C -0.10 -2.94 4.84 30.59 0.15 -2.79 16 19 C 0.15 5.68 6.16 86.38 0.53 6.21 16 20 N -0.75 -37.63 5.60 -343.45 -1.92 -39.56 16 21 C -0.25 -13.59 9.99 84.03 0.84 -12.75 16 22 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 24 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 25 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 29 C 0.11 2.44 6.37 86.86 0.55 2.99 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 0.31 7.11 -2.39 -0.02 0.29 16 33 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.09 1.55 7.88 -2.39 -0.02 1.54 16 35 H 0.12 1.24 8.14 -2.38 -0.02 1.23 16 36 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.16 0.41 7.13 -2.39 -0.02 0.40 16 39 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.21 7.91 -2.39 -0.02 1.19 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.91 7.97 -2.39 -0.02 1.89 16 46 H 0.03 1.13 7.75 -2.39 -0.02 1.11 16 47 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.37 19.97 7.67 -92.71 -0.71 19.26 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.06 1.50 8.04 -2.39 -0.02 1.48 16 51 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 Total: -1.00 -85.88 421.61 1.82 -84.06 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.22 Total: 24.95 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 8.06 Total: 10.49 kcal Atomic # 7 Polarization: -139.66 SS G_CDS: -8.43 Total: -148.09 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.06 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -85.88 1.82 -84.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501652063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.510 kcal (2) G-P(sol) polarization free energy of solvation -85.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds