Wall clock time and date at job start Wed Apr 1 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40446 * 126.82142 * 2 1 4 4 C 1.30704 * 106.79435 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.53044 * 180.02562 * 4 3 2 6 6 C 1.53007 * 117.49683 * 8.71553 * 5 4 3 7 7 C 1.53010 * 117.49688 * 300.06171 * 5 4 3 8 8 N 1.33248 * 108.94748 * 359.76179 * 4 3 2 9 9 C 1.30825 * 109.82550 * 0.40592 * 8 4 3 10 10 C 1.50708 * 125.96353 * 179.86829 * 9 8 4 11 11 C 1.50700 * 109.46698 * 269.68884 * 10 9 8 12 12 O 1.21279 * 120.00322 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99786 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00315 * 179.97438 * 13 11 10 15 15 H 1.09009 * 110.05276 * 33.58758 * 14 13 11 16 16 C 1.54266 * 110.03370 * 272.17546 * 14 13 11 17 17 C 1.54899 * 104.19319 * 217.09962 * 16 14 13 18 18 C 1.54891 * 102.74611 * 37.94376 * 17 16 14 19 19 H 1.08995 * 110.49176 * 80.73636 * 18 17 16 20 20 C 1.53002 * 110.59714 * 203.32616 * 18 17 16 21 21 N 1.46507 * 109.46733 * 289.83382 * 20 18 17 22 22 C 1.36938 * 119.99822 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00001 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99718 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00346 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99949 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46895 * 59.99748 * 26 24 22 28 28 H 1.48498 * 109.46805 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.46609 * 299.99623 * 26 24 22 30 30 C 1.53869 * 110.03544 * 155.00338 * 14 13 11 31 31 H 1.08997 * 109.47063 * 270.03914 * 1 2 3 32 32 H 1.09001 * 109.46952 * 30.04302 * 1 2 3 33 33 H 1.09004 * 109.46928 * 150.03904 * 1 2 3 34 34 H 1.08996 * 115.55512 * 154.39332 * 5 4 3 35 35 H 1.09001 * 117.49635 * 0.02562 * 6 5 4 36 36 H 1.08993 * 117.49667 * 145.01939 * 6 5 4 37 37 H 1.08993 * 117.49720 * 214.97749 * 7 5 4 38 38 H 1.08998 * 117.49424 * 359.97288 * 7 5 4 39 39 H 1.08994 * 109.47475 * 149.68982 * 10 9 8 40 40 H 1.09004 * 109.46734 * 29.68378 * 10 9 8 41 41 H 0.97000 * 119.99652 * 0.02562 * 13 11 10 42 42 H 1.08998 * 110.48811 * 98.42947 * 16 14 13 43 43 H 1.08993 * 110.60227 * 335.82974 * 16 14 13 44 44 H 1.08997 * 110.75810 * 279.62763 * 17 16 14 45 45 H 1.08996 * 110.91000 * 156.32706 * 17 16 14 46 46 H 1.08992 * 109.47317 * 49.83844 * 20 18 17 47 47 H 1.08997 * 109.47035 * 169.84399 * 20 18 17 48 48 H 0.96998 * 120.00095 * 0.02562 * 21 20 18 49 49 H 0.97001 * 120.00075 * 179.97438 * 25 24 22 50 50 H 1.09000 * 110.03397 * 0.02562 * 30 14 13 51 51 H 1.09001 * 110.03290 * 238.57843 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6767 0.0006 5 6 4.7776 1.5290 0.0013 6 6 4.6013 3.0349 0.2071 7 6 4.9763 2.4894 -1.1731 8 7 3.5097 -0.6556 0.0061 9 6 2.2708 -1.0760 0.0005 10 6 1.8248 -2.5156 0.0012 11 6 1.6762 -2.9960 -1.4194 12 8 1.9091 -2.2436 -2.3416 13 7 1.2846 -4.2620 -1.6651 14 6 1.1396 -4.7290 -3.0460 15 1 1.8813 -4.2474 -3.6833 16 6 -0.2810 -4.4200 -3.5621 17 6 -0.6396 -5.6429 -4.4426 18 6 -0.0190 -6.8241 -3.6561 19 1 -0.6742 -7.1243 -2.8384 20 6 0.2505 -8.0081 -4.5869 21 7 -1.0226 -8.6029 -5.0014 22 6 -1.0318 -9.6838 -5.8422 23 1 -0.1005 -10.0980 -6.1994 24 6 -2.2380 -10.2470 -6.2353 25 7 -3.3730 -9.7426 -5.7995 26 14 -2.2506 -11.7219 -7.3817 27 1 -1.5185 -12.8478 -6.7477 28 1 -3.6533 -12.1308 -7.6467 29 1 -1.5898 -11.3598 -8.6612 30 6 1.3062 -6.2575 -3.1058 31 1 -0.3633 0.0007 1.0276 32 1 -0.3633 0.8896 -0.5145 33 1 -0.3633 -0.8904 -0.5132 34 1 5.6667 1.0636 0.4267 35 1 3.5865 3.4089 0.3424 36 1 5.3746 3.5601 0.7677 37 1 5.9960 2.6560 -1.5200 38 1 4.2082 2.5044 -1.9464 39 1 0.8671 -2.5990 0.5149 40 1 2.5674 -3.1258 0.5154 41 1 1.0979 -4.8637 -0.9275 42 1 -0.2801 -3.5077 -4.1585 43 1 -0.9800 -4.3306 -2.7306 44 1 -0.1853 -5.5548 -5.4295 45 1 -1.7201 -5.7592 -4.5253 46 1 0.7936 -7.6626 -5.4665 47 1 0.8464 -8.7547 -4.0620 48 1 -1.8590 -8.2307 -4.6809 49 1 -4.2159 -10.1359 -6.0746 50 1 1.4945 -6.6520 -2.1073 51 1 2.1288 -6.5177 -3.7720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507429130.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:25 Heat of formation + Delta-G solvation = 78.941871 kcal Electronic energy + Delta-G solvation = -29522.669427 eV Core-core repulsion = 25459.538575 eV Total energy + Delta-G solvation = -4063.130852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.48978 -40.15400 -38.14850 -37.51685 -34.90030 -34.22289 -33.55731 -32.86382 -31.12038 -29.49570 -28.83475 -27.87288 -27.17695 -24.41825 -24.06763 -22.74217 -22.19775 -21.96626 -20.55671 -20.42906 -20.06476 -19.67105 -17.67687 -17.39086 -17.04700 -16.53539 -16.04029 -15.77370 -15.58896 -15.20336 -14.88540 -14.56164 -14.33913 -14.00022 -13.91596 -13.69083 -13.55152 -13.43949 -13.07473 -12.84480 -12.76125 -12.45879 -12.23641 -12.03627 -11.86830 -11.79852 -11.35383 -11.24250 -11.11940 -10.87461 -10.85190 -10.75688 -10.60010 -10.34078 -10.29734 -10.23544 -10.22333 -9.98964 -9.91023 -9.67488 -9.46264 -9.22159 -8.86100 -6.91110 -5.76552 -3.04681 1.22692 1.94715 2.29652 2.40574 2.95237 3.44015 3.45344 3.48369 3.49341 3.63572 3.99534 4.09004 4.41231 4.49693 4.51374 4.57014 4.62481 4.68737 4.71296 4.74684 4.78880 4.84060 4.99728 5.00083 5.20919 5.29721 5.45773 5.47229 5.50979 5.57150 5.60242 5.62523 5.74991 5.78802 5.83371 5.85182 6.01053 6.04122 6.10667 6.14865 6.23131 6.26649 6.43237 6.46271 6.52831 6.56552 6.78973 6.92197 7.21590 7.69666 7.84364 7.92010 8.42789 9.53894 10.12591 10.47217 11.46331 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.001541 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.711362 B =18165.251627 C =18436.924120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.372 5.372 3 N -0.315 5.315 4 C 0.256 3.744 5 C -0.072 4.072 6 C -0.161 4.161 7 C -0.158 4.158 8 N -0.527 5.527 9 C 0.302 3.698 10 C -0.068 4.068 11 C 0.517 3.483 12 O -0.527 6.527 13 N -0.718 5.718 14 C 0.141 3.859 15 H 0.091 0.909 16 C -0.133 4.133 17 C -0.111 4.111 18 C -0.096 4.096 19 H 0.075 0.925 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.935 5.935 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.122 4.122 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.402 0.598 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.020 0.980 47 H 0.017 0.983 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.711 22.484 17.574 30.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.162 5.162 3 N -0.143 5.143 4 C -0.025 4.025 5 C -0.092 4.092 6 C -0.199 4.199 7 C -0.197 4.197 8 N -0.254 5.254 9 C 0.025 3.975 10 C -0.110 4.110 11 C 0.300 3.700 12 O -0.403 6.403 13 N -0.370 5.370 14 C 0.037 3.963 15 H 0.109 0.891 16 C -0.171 4.171 17 C -0.149 4.149 18 C -0.115 4.115 19 H 0.093 0.907 20 C 0.032 3.968 21 N -0.376 5.376 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.161 4.161 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.237 0.763 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.091 0.909 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.908 23.434 16.805 31.198 hybrid contribution -0.787 -1.323 -0.196 1.552 sum 11.121 22.110 16.609 29.806 Atomic orbital electron populations 1.21975 0.73730 1.05318 1.03696 1.50063 1.07811 1.03713 1.54612 1.77926 1.01336 1.07449 1.27578 1.23037 0.92425 0.89143 0.97920 1.20057 0.93371 0.89819 1.05975 1.23043 1.03739 0.93575 0.99508 1.23048 1.03341 1.01517 0.91778 1.70209 1.19368 1.10925 1.24888 1.23241 0.86161 0.91336 0.96760 1.20207 1.05113 0.88526 0.97186 1.20088 0.77203 0.82540 0.90151 1.90785 1.49022 1.54614 1.45830 1.46184 1.68964 1.12352 1.09492 1.21759 0.98149 0.94856 0.81503 0.89137 1.22780 0.95465 0.99114 0.99777 1.22468 1.01555 0.92613 0.98284 1.22148 0.95232 0.95731 0.98408 0.90651 1.20699 0.90031 0.91741 0.94348 1.42333 1.02416 1.35666 1.57143 1.19202 0.92495 1.05288 1.20097 0.91296 1.24725 0.95322 0.99844 1.01093 1.69648 0.96601 1.43211 1.48874 0.86273 0.76450 0.82705 0.80796 1.21303 1.21700 1.21289 1.22439 0.99296 0.92613 1.01755 0.89974 0.88699 0.89101 0.85148 0.87912 0.87862 0.87685 0.88504 0.86457 0.84896 0.76349 0.91618 0.91513 0.91183 0.90857 0.96266 0.96512 0.78299 0.93523 0.91247 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.16 59.85 0.67 1.26 16 2 N -0.37 -3.99 4.04 -65.09 -0.26 -4.25 16 3 N -0.31 -3.97 12.24 32.42 0.40 -3.58 16 4 C 0.26 3.23 7.69 -156.85 -1.21 2.03 16 5 C -0.07 -0.67 6.33 -91.76 -0.58 -1.25 16 6 C -0.16 -1.17 10.14 -26.69 -0.27 -1.44 16 7 C -0.16 -1.26 10.24 -26.69 -0.27 -1.53 16 8 N -0.53 -7.01 11.19 -8.16 -0.09 -7.10 16 9 C 0.30 3.34 6.48 -155.70 -1.01 2.33 16 10 C -0.07 -0.47 5.82 -29.03 -0.17 -0.64 16 11 C 0.52 5.22 7.82 -10.99 -0.09 5.13 16 12 O -0.53 -7.92 15.69 5.56 0.09 -7.83 16 13 N -0.72 -6.08 5.04 -52.72 -0.27 -6.34 16 14 C 0.14 1.56 3.24 -66.82 -0.22 1.34 16 15 H 0.09 1.17 7.57 -51.92 -0.39 0.77 16 16 C -0.13 -1.58 6.53 -25.07 -0.16 -1.75 16 17 C -0.11 -1.62 6.20 -24.73 -0.15 -1.77 16 18 C -0.10 -1.41 2.88 -88.96 -0.26 -1.67 16 19 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.16 3.08 5.55 -4.04 -0.02 3.06 16 21 N -0.73 -18.16 5.50 -59.91 -0.33 -18.49 16 22 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 26 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C -0.12 -1.38 6.14 -25.62 -0.16 -1.54 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.45 7.72 -51.93 -0.40 0.05 16 34 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 0.84 7.88 -51.93 -0.41 0.44 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.12 0.37 7.76 -51.93 -0.40 -0.03 16 40 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 2.18 8.32 -40.82 -0.34 1.84 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 44 H 0.07 1.09 7.97 -51.93 -0.41 0.67 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.02 0.38 8.02 -51.93 -0.42 -0.03 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.38 9.95 7.64 -40.82 -0.31 9.64 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.07 0.66 7.62 -51.93 -0.40 0.26 16 51 H 0.08 0.90 7.84 -51.93 -0.41 0.49 16 LS Contribution 421.40 15.07 6.35 6.35 Total: -1.00 -37.39 421.40 -11.06 -48.45 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.50 Total: 6.56 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -4.14 Total: -3.77 kcal Atomic # 7 Polarization: -67.22 SS G_CDS: 0.17 Total: -67.05 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -37.39 -11.06 -48.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507429130.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.395 kcal (2) G-P(sol) polarization free energy of solvation -37.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds