Wall clock time and date at job start Wed Apr 1 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40446 * 126.82142 * 2 1 4 4 C 1.30704 * 106.79435 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.53044 * 180.02562 * 4 3 2 6 6 C 1.53007 * 117.49683 * 8.71553 * 5 4 3 7 7 C 1.53010 * 117.49688 * 300.06171 * 5 4 3 8 8 N 1.33248 * 108.94748 * 359.76179 * 4 3 2 9 9 C 1.30825 * 109.82550 * 0.40592 * 8 4 3 10 10 C 1.50708 * 125.96353 * 179.86829 * 9 8 4 11 11 C 1.50700 * 109.46698 * 269.68884 * 10 9 8 12 12 O 1.21279 * 120.00322 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99786 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00315 * 179.97438 * 13 11 10 15 15 H 1.09009 * 110.05276 * 33.58758 * 14 13 11 16 16 C 1.54266 * 110.03370 * 272.17546 * 14 13 11 17 17 C 1.54899 * 104.19319 * 217.09962 * 16 14 13 18 18 C 1.54891 * 102.74611 * 37.94376 * 17 16 14 19 19 H 1.08995 * 110.49176 * 80.73636 * 18 17 16 20 20 C 1.53002 * 110.59714 * 203.32616 * 18 17 16 21 21 N 1.46507 * 109.46733 * 289.83382 * 20 18 17 22 22 C 1.36938 * 119.99822 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00001 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99718 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00346 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99949 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.46895 * 59.99748 * 26 24 22 28 28 H 1.48498 * 109.46805 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.46609 * 299.99623 * 26 24 22 30 30 C 1.53869 * 110.03544 * 155.00338 * 14 13 11 31 31 H 1.08997 * 109.47063 * 270.03914 * 1 2 3 32 32 H 1.09001 * 109.46952 * 30.04302 * 1 2 3 33 33 H 1.09004 * 109.46928 * 150.03904 * 1 2 3 34 34 H 1.08996 * 115.55512 * 154.39332 * 5 4 3 35 35 H 1.09001 * 117.49635 * 0.02562 * 6 5 4 36 36 H 1.08993 * 117.49667 * 145.01939 * 6 5 4 37 37 H 1.08993 * 117.49720 * 214.97749 * 7 5 4 38 38 H 1.08998 * 117.49424 * 359.97288 * 7 5 4 39 39 H 1.08994 * 109.47475 * 149.68982 * 10 9 8 40 40 H 1.09004 * 109.46734 * 29.68378 * 10 9 8 41 41 H 0.97000 * 119.99652 * 0.02562 * 13 11 10 42 42 H 1.08998 * 110.48811 * 98.42947 * 16 14 13 43 43 H 1.08993 * 110.60227 * 335.82974 * 16 14 13 44 44 H 1.08997 * 110.75810 * 279.62763 * 17 16 14 45 45 H 1.08996 * 110.91000 * 156.32706 * 17 16 14 46 46 H 1.08992 * 109.47317 * 49.83844 * 20 18 17 47 47 H 1.08997 * 109.47035 * 169.84399 * 20 18 17 48 48 H 0.96998 * 120.00095 * 0.02562 * 21 20 18 49 49 H 0.97001 * 120.00075 * 179.97438 * 25 24 22 50 50 H 1.09000 * 110.03397 * 0.02562 * 30 14 13 51 51 H 1.09001 * 110.03290 * 238.57843 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6767 0.0006 5 6 4.7776 1.5290 0.0013 6 6 4.6013 3.0349 0.2071 7 6 4.9763 2.4894 -1.1731 8 7 3.5097 -0.6556 0.0061 9 6 2.2708 -1.0760 0.0005 10 6 1.8248 -2.5156 0.0012 11 6 1.6762 -2.9960 -1.4194 12 8 1.9091 -2.2436 -2.3416 13 7 1.2846 -4.2620 -1.6651 14 6 1.1396 -4.7290 -3.0460 15 1 1.8813 -4.2474 -3.6833 16 6 -0.2810 -4.4200 -3.5621 17 6 -0.6396 -5.6429 -4.4426 18 6 -0.0190 -6.8241 -3.6561 19 1 -0.6742 -7.1243 -2.8384 20 6 0.2505 -8.0081 -4.5869 21 7 -1.0226 -8.6029 -5.0014 22 6 -1.0318 -9.6838 -5.8422 23 1 -0.1005 -10.0980 -6.1994 24 6 -2.2380 -10.2470 -6.2353 25 7 -3.3730 -9.7426 -5.7995 26 14 -2.2506 -11.7219 -7.3817 27 1 -1.5185 -12.8478 -6.7477 28 1 -3.6533 -12.1308 -7.6467 29 1 -1.5898 -11.3598 -8.6612 30 6 1.3062 -6.2575 -3.1058 31 1 -0.3633 0.0007 1.0276 32 1 -0.3633 0.8896 -0.5145 33 1 -0.3633 -0.8904 -0.5132 34 1 5.6667 1.0636 0.4267 35 1 3.5865 3.4089 0.3424 36 1 5.3746 3.5601 0.7677 37 1 5.9960 2.6560 -1.5200 38 1 4.2082 2.5044 -1.9464 39 1 0.8671 -2.5990 0.5149 40 1 2.5674 -3.1258 0.5154 41 1 1.0979 -4.8637 -0.9275 42 1 -0.2801 -3.5077 -4.1585 43 1 -0.9800 -4.3306 -2.7306 44 1 -0.1853 -5.5548 -5.4295 45 1 -1.7201 -5.7592 -4.5253 46 1 0.7936 -7.6626 -5.4665 47 1 0.8464 -8.7547 -4.0620 48 1 -1.8590 -8.2307 -4.6809 49 1 -4.2159 -10.1359 -6.0746 50 1 1.4945 -6.6520 -2.1073 51 1 2.1288 -6.5177 -3.7720 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507429130.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:24 Heat of formation + Delta-G solvation = 53.795034 kcal Electronic energy + Delta-G solvation = -29523.759876 eV Core-core repulsion = 25459.538575 eV Total energy + Delta-G solvation = -4064.221301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.26200 -41.03208 -39.23126 -38.17083 -36.46414 -34.92508 -34.80405 -33.71299 -32.85609 -30.39888 -30.07431 -28.76884 -28.04282 -26.12919 -24.76749 -23.91138 -23.34462 -22.78873 -21.40925 -21.30925 -20.97559 -20.74776 -19.06552 -18.44048 -18.08308 -17.40608 -16.82276 -16.75387 -16.42824 -16.34608 -15.92432 -15.79354 -15.52066 -15.09943 -15.01801 -14.65408 -14.50930 -14.41936 -14.25719 -14.13045 -13.54647 -13.34429 -13.12844 -13.11966 -12.90848 -12.75857 -12.65991 -12.43474 -12.39501 -12.19746 -12.06251 -11.89583 -11.76416 -11.61512 -11.52155 -11.49145 -11.46428 -11.13047 -11.06568 -10.88582 -10.73221 -10.19134 -10.08298 -8.96096 -7.93671 -5.21429 0.45265 1.31067 1.48039 1.50680 1.54350 1.56796 1.61395 2.22035 2.57458 2.78972 2.98651 3.34680 3.39709 3.46793 3.58851 3.61029 3.84295 3.87252 3.92517 4.03812 4.08020 4.19540 4.20581 4.31577 4.39911 4.44820 4.52704 4.54800 4.57381 4.57897 4.63813 4.72483 4.72591 4.79240 4.88461 4.89868 5.07631 5.09326 5.10684 5.17536 5.21172 5.25388 5.27321 5.35656 5.39902 5.49037 5.56493 5.61361 5.78269 6.29175 6.53405 7.03769 7.22120 7.35737 8.13640 8.36601 9.29544 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.001541 C = 0.001518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.711362 B =18165.251627 C =18436.924120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.376 5.376 3 N -0.342 5.342 4 C 0.240 3.760 5 C -0.092 4.092 6 C -0.143 4.143 7 C -0.157 4.157 8 N -0.562 5.562 9 C 0.293 3.707 10 C -0.060 4.060 11 C 0.519 3.481 12 O -0.582 6.582 13 N -0.701 5.701 14 C 0.150 3.850 15 H 0.072 0.928 16 C -0.121 4.121 17 C -0.111 4.111 18 C -0.087 4.087 19 H 0.078 0.922 20 C 0.156 3.844 21 N -0.743 5.743 22 C -0.248 4.248 23 H 0.073 0.927 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.971 3.029 27 H -0.277 1.277 28 H -0.295 1.295 29 H -0.280 1.280 30 C -0.110 4.110 31 H 0.110 0.890 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.163 0.837 40 H 0.158 0.842 41 H 0.421 0.579 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.014 0.986 47 H 0.022 0.978 48 H 0.375 0.625 49 H 0.251 0.749 50 H 0.099 0.901 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.485 22.151 19.407 31.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.166 5.166 3 N -0.172 5.172 4 C -0.042 4.042 5 C -0.113 4.113 6 C -0.181 4.181 7 C -0.196 4.196 8 N -0.290 5.290 9 C 0.016 3.984 10 C -0.101 4.101 11 C 0.305 3.695 12 O -0.461 6.461 13 N -0.354 5.354 14 C 0.045 3.955 15 H 0.090 0.910 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.106 4.106 19 H 0.096 0.904 20 C 0.030 3.970 21 N -0.386 5.386 22 C -0.380 4.380 23 H 0.091 0.909 24 C -0.266 4.266 25 N -0.619 5.619 26 Si 0.800 3.200 27 H -0.203 1.203 28 H -0.221 1.221 29 H -0.207 1.207 30 C -0.148 4.148 31 H 0.128 0.872 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.158 0.842 35 H 0.108 0.892 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.094 0.906 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.260 0.740 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.032 0.968 47 H 0.040 0.960 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.117 0.883 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.696 23.080 18.677 32.291 hybrid contribution -1.027 -1.202 -0.788 1.767 sum 11.669 21.879 17.889 30.575 Atomic orbital electron populations 1.22326 0.71529 1.05960 1.05709 1.50345 1.09079 1.03236 1.53937 1.77830 1.01785 1.08961 1.28581 1.23601 0.93306 0.89517 0.97745 1.20283 0.92910 0.90657 1.07410 1.23085 1.03879 0.92155 0.99003 1.23080 1.03921 1.01112 0.91441 1.70187 1.21047 1.11453 1.26325 1.23914 0.85840 0.92863 0.95744 1.20405 1.08167 0.86253 0.95324 1.20565 0.75885 0.82206 0.90868 1.90780 1.51452 1.56109 1.47768 1.45962 1.68118 1.12310 1.09008 1.21445 0.96846 0.94476 0.82720 0.91018 1.22664 0.96449 0.97236 0.99594 1.22390 1.00158 0.94207 0.98199 1.22022 0.97292 0.93851 0.97415 0.90370 1.20890 0.87782 0.93294 0.95069 1.42541 1.03954 1.35280 1.56824 1.19617 0.92657 1.05787 1.19907 0.90900 1.25524 0.95099 1.02850 1.03151 1.69801 0.96910 1.44712 1.50465 0.85246 0.76137 0.79622 0.78968 1.20325 1.22096 1.20655 1.22329 0.96966 0.92402 1.03147 0.87203 0.88994 0.87591 0.84168 0.89159 0.85165 0.85475 0.90558 0.81943 0.82448 0.74004 0.92546 0.89896 0.92810 0.92786 0.96782 0.96034 0.79336 0.94048 0.88296 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 11.16 127.77 1.43 2.34 16 2 N -0.38 -7.75 4.04 -359.86 -1.45 -9.20 16 3 N -0.34 -8.78 12.24 -51.33 -0.63 -9.41 16 4 C 0.24 6.14 7.69 138.63 1.07 7.21 16 5 C -0.09 -1.73 6.33 -11.53 -0.07 -1.80 16 6 C -0.14 -2.00 10.14 30.62 0.31 -1.69 16 7 C -0.16 -2.48 10.24 30.62 0.31 -2.17 16 8 N -0.56 -14.87 11.19 -179.72 -2.01 -16.88 16 9 C 0.29 6.12 6.48 138.23 0.90 7.01 16 10 C -0.06 -0.64 5.82 29.10 0.17 -0.48 16 11 C 0.52 9.30 7.82 87.66 0.69 9.99 16 12 O -0.58 -17.17 15.69 -3.03 -0.05 -17.22 16 13 N -0.70 -9.66 5.04 -439.11 -2.21 -11.88 16 14 C 0.15 3.03 3.24 45.71 0.15 3.18 16 15 H 0.07 1.79 7.57 -2.38 -0.02 1.78 16 16 C -0.12 -2.74 6.53 31.67 0.21 -2.53 16 17 C -0.11 -3.23 6.20 31.89 0.20 -3.03 16 18 C -0.09 -2.44 2.88 -9.72 -0.03 -2.47 16 19 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 20 C 0.16 5.95 5.55 86.38 0.48 6.43 16 21 N -0.74 -37.10 5.50 -343.45 -1.89 -38.99 16 22 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 23 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 24 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 25 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 26 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 28 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 30 C -0.11 -2.21 6.14 31.32 0.19 -2.02 16 31 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 0.79 7.72 -2.39 -0.02 0.78 16 34 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 1.49 7.88 -2.39 -0.02 1.48 16 36 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.16 0.24 7.76 -2.39 -0.02 0.22 16 40 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.42 2.66 8.32 -92.71 -0.77 1.89 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.63 8.05 -2.39 -0.02 1.61 16 44 H 0.05 1.71 7.97 -2.39 -0.02 1.69 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.01 0.56 8.02 -2.39 -0.02 0.54 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.37 19.75 7.64 -92.71 -0.71 19.04 16 49 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 50 H 0.10 1.45 7.62 -2.39 -0.02 1.43 16 51 H 0.08 1.61 7.84 -2.39 -0.02 1.59 16 Total: -1.00 -84.32 421.40 0.83 -83.49 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: -0.53 Total: 27.35 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 7.29 Total: 3.23 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -7.91 Total: -144.78 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.05 Total: -17.22 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -84.32 0.83 -83.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507429130.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.287 kcal (2) G-P(sol) polarization free energy of solvation -84.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds