Wall clock time and date at job start Wed Apr 1 2020 04:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46984 * 2 1 4 4 C 1.36740 * 127.13918 * 91.93330 * 3 2 1 5 5 C 1.50706 * 126.34386 * 359.76904 * 4 3 2 6 6 C 1.53002 * 109.46768 * 90.00125 * 5 4 3 7 7 C 1.50698 * 109.46760 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00122 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99939 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00034 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99776 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46827 * 90.00683 * 11 9 7 13 13 H 1.48501 * 109.46903 * 210.00435 * 11 9 7 14 14 H 1.48492 * 109.47371 * 330.00221 * 11 9 7 15 15 N 1.30294 * 107.30572 * 179.73927 * 4 3 2 16 16 N 1.28528 * 110.05284 * 359.97438 * 15 4 3 17 17 C 1.31214 * 109.86038 * 0.02562 * 16 15 4 18 18 N 1.38578 * 126.47091 * 179.97438 * 17 16 15 19 19 C 1.46847 * 111.00584 * 64.29061 * 18 17 16 20 20 C 1.53147 * 109.45598 * 173.65304 * 19 18 17 21 21 C 1.52531 * 109.31609 * 58.26099 * 20 19 18 22 22 C 1.54133 * 110.08667 * 181.88998 * 21 20 19 23 23 C 1.54580 * 101.65585 * 216.69986 * 22 21 20 24 24 N 1.46819 * 105.49606 * 24.98041 * 23 22 21 25 25 C 1.34569 * 111.27716 * 343.08044 * 24 23 22 26 26 O 1.21284 * 125.02956 * 180.72580 * 25 24 23 27 27 C 1.52547 * 110.49968 * 303.69360 * 21 20 19 28 28 C 1.46857 * 110.99900 * 299.92635 * 18 17 16 29 29 H 1.09000 * 109.47129 * 299.99566 * 1 2 3 30 30 H 1.08992 * 109.47126 * 60.00185 * 1 2 3 31 31 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47034 * 239.99896 * 2 1 3 33 33 H 1.09004 * 109.47302 * 120.00125 * 2 1 3 34 34 H 1.08992 * 109.46759 * 210.00277 * 5 4 3 35 35 H 1.09001 * 109.47088 * 330.00669 * 5 4 3 36 36 H 1.08999 * 109.47280 * 300.00239 * 6 5 4 37 37 H 1.09001 * 109.46871 * 60.00411 * 6 5 4 38 38 H 0.97003 * 119.99794 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.47470 * 293.64660 * 19 18 17 40 40 H 1.09002 * 109.47361 * 53.65033 * 19 18 17 41 41 H 1.08997 * 109.49314 * 298.30801 * 20 19 18 42 42 H 1.09001 * 109.51909 * 178.23310 * 20 19 18 43 43 H 1.09003 * 110.98567 * 334.79443 * 22 21 20 44 44 H 1.08998 * 110.99090 * 98.56380 * 22 21 20 45 45 H 1.09004 * 110.24028 * 143.98670 * 23 22 21 46 46 H 1.09002 * 110.24004 * 265.97560 * 23 22 21 47 47 H 0.97001 * 124.35770 * 163.08306 * 24 23 22 48 48 H 1.09003 * 109.49362 * 296.35128 * 27 21 20 49 49 H 1.08996 * 109.52464 * 176.27266 * 27 21 20 50 50 H 1.08999 * 109.46999 * 306.34990 * 28 18 17 51 51 H 1.08998 * 109.47158 * 66.34970 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3282 2.1473 1.0894 5 6 2.2267 1.7288 2.5336 6 6 3.5502 1.1022 2.9771 7 6 3.4490 0.6843 4.4215 8 1 2.5322 0.8486 4.9682 9 6 4.5267 0.0920 5.0449 10 7 4.4382 -0.2732 6.3052 11 14 6.1121 -0.1930 4.0990 12 1 6.9954 0.9918 4.2451 13 1 6.8009 -1.3933 4.6375 14 1 5.8005 -0.4039 2.6625 15 7 2.7279 3.3060 0.6474 16 7 2.6926 3.3237 -0.6372 17 6 2.2642 2.1680 -1.0874 18 7 2.0937 1.8135 -2.4161 19 6 3.3786 1.8019 -3.1270 20 6 3.1734 1.2553 -4.5428 21 6 2.1524 2.1206 -5.2746 22 6 1.8969 1.5580 -6.6867 23 6 1.7230 2.8533 -7.5122 24 7 2.4534 3.8905 -6.7731 25 6 2.6993 3.5064 -5.5070 26 8 3.2751 4.1761 -4.6757 27 6 0.8451 2.1825 -4.4910 28 6 1.1260 2.6988 -3.0769 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0130 2.6015 3.1506 35 1 1.4242 0.9996 2.6451 36 1 3.7639 0.2295 2.3600 37 1 4.3527 1.8314 2.8657 38 1 5.1964 -0.6903 6.7437 39 1 3.7722 2.8169 -3.1828 40 1 4.0846 1.1674 -2.5912 41 1 2.8081 0.2299 -4.4874 42 1 4.1206 1.2755 -5.0818 43 1 2.7533 0.9827 -7.0385 44 1 0.9889 0.9554 -6.7085 45 1 2.1508 2.7269 -8.5068 46 1 0.6674 3.1150 -7.5853 47 1 2.7239 4.7428 -7.1490 48 1 0.4075 1.1858 -4.4342 49 1 0.1510 2.8564 -4.9931 50 1 0.1984 2.7147 -2.5048 51 1 1.5356 3.7074 -3.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520980635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:13 Heat of formation + Delta-G solvation = 43.928730 kcal Electronic energy + Delta-G solvation = -31865.410419 eV Core-core repulsion = 27800.761283 eV Total energy + Delta-G solvation = -4064.649136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.63468 -41.50776 -38.09304 -36.80866 -35.50619 -34.33508 -33.52126 -31.79790 -31.31793 -30.35821 -29.73018 -28.44990 -26.16861 -25.26042 -23.89005 -23.66661 -22.59396 -22.24297 -21.36915 -20.53823 -19.89872 -18.98078 -17.73977 -17.28184 -16.79422 -16.49038 -16.15685 -15.87202 -15.11871 -14.91521 -14.65832 -14.41953 -14.22869 -14.05129 -13.95084 -13.69271 -13.60145 -13.31683 -13.14003 -12.95884 -12.66905 -12.63053 -12.59466 -12.47782 -12.20896 -12.03774 -11.56664 -11.42626 -11.33325 -11.09299 -11.05368 -10.85053 -10.75129 -10.42752 -10.34720 -10.04097 -9.83021 -9.79088 -9.76930 -9.49600 -9.27449 -8.63608 -8.56875 -8.45452 -6.08068 -4.07249 2.08692 2.29049 2.51329 2.95326 3.27023 3.31382 3.38406 3.42347 3.70963 3.86235 3.91688 4.15130 4.42526 4.43194 4.54937 4.73738 4.76389 4.86854 4.92619 4.97378 5.02478 5.05322 5.16145 5.19780 5.25594 5.28501 5.31077 5.32706 5.43382 5.46738 5.55666 5.58709 5.60007 5.61132 5.68871 5.83297 5.87388 6.02459 6.09634 6.25170 6.33517 6.40388 6.41376 6.56924 6.64748 6.69438 6.93435 7.16765 7.30253 7.50170 7.71562 7.94374 8.46425 8.95254 9.18313 9.53898 11.04785 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.002543 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.173369 B =11008.762666 C =11329.464724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.464 5.464 4 C 0.209 3.791 5 C -0.022 4.022 6 C -0.004 4.004 7 C -0.522 4.522 8 H 0.076 0.924 9 C 0.071 3.929 10 N -0.900 5.900 11 Si 0.878 3.122 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.268 1.268 15 N -0.298 5.298 16 N -0.307 5.307 17 C 0.323 3.677 18 N -0.456 5.456 19 C 0.052 3.948 20 C -0.090 4.090 21 C -0.095 4.095 22 C -0.126 4.126 23 C 0.101 3.899 24 N -0.737 5.737 25 C 0.523 3.477 26 O -0.509 6.509 27 C -0.091 4.091 28 C 0.063 3.937 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.013 0.987 37 H 0.021 0.979 38 H 0.264 0.736 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.409 0.591 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.383 -0.731 -32.218 33.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.157 5.157 4 C -0.058 4.058 5 C -0.062 4.062 6 C -0.043 4.043 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.131 4.131 10 N -0.538 5.538 11 Si 0.705 3.295 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.193 1.193 15 N -0.138 5.138 16 N -0.150 5.150 17 C -0.033 4.033 18 N -0.181 5.181 19 C -0.075 4.075 20 C -0.128 4.128 21 C -0.098 4.098 22 C -0.164 4.164 23 C -0.024 4.024 24 N -0.394 5.394 25 C 0.309 3.691 26 O -0.383 6.383 27 C -0.129 4.129 28 C -0.065 4.065 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.248 0.752 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.701 0.365 -31.596 33.054 hybrid contribution 0.830 -0.496 -0.735 1.214 sum -8.870 -0.131 -32.331 33.526 Atomic orbital electron populations 1.22084 0.94088 1.03030 1.02854 1.21830 0.95602 0.79122 1.05082 1.46430 1.49526 1.13755 1.05978 1.25624 0.99387 0.88280 0.92558 1.20222 1.01525 1.01763 0.82671 1.19548 0.91890 0.95401 0.97433 1.21011 1.01222 1.39739 0.93987 0.90590 1.24961 0.98525 0.94906 0.94684 1.69901 1.31520 1.41630 1.10757 0.86814 0.84041 0.78017 0.80635 1.20052 1.21318 1.19287 1.74079 1.19500 1.17880 1.02361 1.74578 1.18441 1.17867 1.04130 1.22105 1.04789 0.88556 0.87884 1.58524 1.11930 1.51769 0.95915 1.22355 0.88854 1.03390 0.92932 1.21426 0.97874 0.99085 0.94458 1.21079 0.98015 0.94122 0.96620 1.22717 1.04045 0.96725 0.92918 1.22082 0.96916 0.87467 0.95893 1.46294 1.59376 1.20455 1.13275 1.20695 0.78255 0.88416 0.81776 1.90800 1.41183 1.59402 1.46915 1.21452 0.94412 1.03140 0.93940 1.22142 0.95170 0.95461 0.93694 0.91839 0.92089 0.90501 0.88702 0.88100 0.88765 0.90607 0.96874 0.96090 0.92619 0.90079 0.90763 0.89863 0.90744 0.89612 0.88752 0.90277 0.91038 0.75220 0.89486 0.90717 0.90592 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 10.24 37.16 0.38 -1.31 16 2 C 0.11 1.36 6.63 -4.04 -0.03 1.34 16 3 N -0.46 -7.79 2.81 -114.08 -0.32 -8.12 16 4 C 0.21 4.15 7.32 -154.01 -1.13 3.02 16 5 C -0.02 -0.44 5.34 -27.88 -0.15 -0.59 16 6 C 0.00 -0.10 4.02 -27.88 -0.11 -0.21 16 7 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 8 H 0.08 2.23 7.99 -52.49 -0.42 1.82 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 11 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 12 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 15 N -0.30 -6.60 12.18 32.99 0.40 -6.20 16 16 N -0.31 -6.39 12.18 30.31 0.37 -6.02 16 17 C 0.32 5.56 6.41 -318.89 -2.04 3.52 16 18 N -0.46 -6.05 4.65 -174.41 -0.81 -6.87 16 19 C 0.05 0.67 5.17 -3.78 -0.02 0.65 16 20 C -0.09 -0.77 4.77 -26.90 -0.13 -0.90 16 21 C -0.09 -0.70 0.55 -155.50 -0.09 -0.78 16 22 C -0.13 -0.46 6.21 -25.31 -0.16 -0.62 16 23 C 0.10 0.33 7.79 -3.04 -0.02 0.31 16 24 N -0.74 -4.78 6.25 -59.25 -0.37 -5.15 16 25 C 0.52 5.28 6.74 -11.04 -0.07 5.20 16 26 O -0.51 -7.65 14.26 5.55 0.08 -7.57 16 27 C -0.09 -0.68 4.77 -26.89 -0.13 -0.81 16 28 C 0.06 0.74 5.15 -3.78 -0.02 0.72 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.35 7.78 -51.93 -0.40 0.95 16 34 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 35 H 0.08 1.37 7.87 -51.93 -0.41 0.96 16 36 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 37 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.08 1.31 5.78 -51.93 -0.30 1.01 16 40 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.27 7.89 -51.93 -0.41 -0.14 16 44 H 0.09 0.19 7.87 -51.93 -0.41 -0.21 16 45 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.41 2.23 8.96 -40.82 -0.37 1.86 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 51 H 0.06 0.94 6.68 -51.93 -0.35 0.59 16 LS Contribution 400.41 15.07 6.03 6.03 Total: -1.00 -36.85 400.41 -11.15 -48.00 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.49 Total: -1.41 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -4.15 Total: -3.41 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: 0.04 Total: -59.01 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.08 Total: -7.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.85 -11.15 -48.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520980635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.927 kcal (2) G-P(sol) polarization free energy of solvation -36.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds