Wall clock time and date at job start Wed Apr 1 2020 04:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46984 * 2 1 4 4 C 1.36740 * 127.13918 * 91.93330 * 3 2 1 5 5 C 1.50706 * 126.34386 * 359.76904 * 4 3 2 6 6 C 1.53002 * 109.46768 * 90.00125 * 5 4 3 7 7 C 1.50698 * 109.46760 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00122 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99939 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00034 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 119.99776 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46827 * 90.00683 * 11 9 7 13 13 H 1.48501 * 109.46903 * 210.00435 * 11 9 7 14 14 H 1.48492 * 109.47371 * 330.00221 * 11 9 7 15 15 N 1.30294 * 107.30572 * 179.73927 * 4 3 2 16 16 N 1.28528 * 110.05284 * 359.97438 * 15 4 3 17 17 C 1.31214 * 109.86038 * 0.02562 * 16 15 4 18 18 N 1.38578 * 126.47091 * 179.97438 * 17 16 15 19 19 C 1.46847 * 111.00584 * 64.29061 * 18 17 16 20 20 C 1.53147 * 109.45598 * 173.65304 * 19 18 17 21 21 C 1.52531 * 109.31609 * 58.26099 * 20 19 18 22 22 C 1.54133 * 110.08667 * 181.88998 * 21 20 19 23 23 C 1.54580 * 101.65585 * 216.69986 * 22 21 20 24 24 N 1.46819 * 105.49606 * 24.98041 * 23 22 21 25 25 C 1.34569 * 111.27716 * 343.08044 * 24 23 22 26 26 O 1.21284 * 125.02956 * 180.72580 * 25 24 23 27 27 C 1.52547 * 110.49968 * 303.69360 * 21 20 19 28 28 C 1.46857 * 110.99900 * 299.92635 * 18 17 16 29 29 H 1.09000 * 109.47129 * 299.99566 * 1 2 3 30 30 H 1.08992 * 109.47126 * 60.00185 * 1 2 3 31 31 H 1.09002 * 109.47005 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47034 * 239.99896 * 2 1 3 33 33 H 1.09004 * 109.47302 * 120.00125 * 2 1 3 34 34 H 1.08992 * 109.46759 * 210.00277 * 5 4 3 35 35 H 1.09001 * 109.47088 * 330.00669 * 5 4 3 36 36 H 1.08999 * 109.47280 * 300.00239 * 6 5 4 37 37 H 1.09001 * 109.46871 * 60.00411 * 6 5 4 38 38 H 0.97003 * 119.99794 * 179.97438 * 10 9 7 39 39 H 1.09005 * 109.47470 * 293.64660 * 19 18 17 40 40 H 1.09002 * 109.47361 * 53.65033 * 19 18 17 41 41 H 1.08997 * 109.49314 * 298.30801 * 20 19 18 42 42 H 1.09001 * 109.51909 * 178.23310 * 20 19 18 43 43 H 1.09003 * 110.98567 * 334.79443 * 22 21 20 44 44 H 1.08998 * 110.99090 * 98.56380 * 22 21 20 45 45 H 1.09004 * 110.24028 * 143.98670 * 23 22 21 46 46 H 1.09002 * 110.24004 * 265.97560 * 23 22 21 47 47 H 0.97001 * 124.35770 * 163.08306 * 24 23 22 48 48 H 1.09003 * 109.49362 * 296.35128 * 27 21 20 49 49 H 1.08996 * 109.52464 * 176.27266 * 27 21 20 50 50 H 1.08999 * 109.46999 * 306.34990 * 28 18 17 51 51 H 1.08998 * 109.47158 * 66.34970 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3282 2.1473 1.0894 5 6 2.2267 1.7288 2.5336 6 6 3.5502 1.1022 2.9771 7 6 3.4490 0.6843 4.4215 8 1 2.5322 0.8486 4.9682 9 6 4.5267 0.0920 5.0449 10 7 4.4382 -0.2732 6.3052 11 14 6.1121 -0.1930 4.0990 12 1 6.9954 0.9918 4.2451 13 1 6.8009 -1.3933 4.6375 14 1 5.8005 -0.4039 2.6625 15 7 2.7279 3.3060 0.6474 16 7 2.6926 3.3237 -0.6372 17 6 2.2642 2.1680 -1.0874 18 7 2.0937 1.8135 -2.4161 19 6 3.3786 1.8019 -3.1270 20 6 3.1734 1.2553 -4.5428 21 6 2.1524 2.1206 -5.2746 22 6 1.8969 1.5580 -6.6867 23 6 1.7230 2.8533 -7.5122 24 7 2.4534 3.8905 -6.7731 25 6 2.6993 3.5064 -5.5070 26 8 3.2751 4.1761 -4.6757 27 6 0.8451 2.1825 -4.4910 28 6 1.1260 2.6988 -3.0769 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.0130 2.6015 3.1506 35 1 1.4242 0.9996 2.6451 36 1 3.7639 0.2295 2.3600 37 1 4.3527 1.8314 2.8657 38 1 5.1964 -0.6903 6.7437 39 1 3.7722 2.8169 -3.1828 40 1 4.0846 1.1674 -2.5912 41 1 2.8081 0.2299 -4.4874 42 1 4.1206 1.2755 -5.0818 43 1 2.7533 0.9827 -7.0385 44 1 0.9889 0.9554 -6.7085 45 1 2.1508 2.7269 -8.5068 46 1 0.6674 3.1150 -7.5853 47 1 2.7239 4.7428 -7.1490 48 1 0.4075 1.1858 -4.4342 49 1 0.1510 2.8564 -4.9931 50 1 0.1984 2.7147 -2.5048 51 1 1.5356 3.7074 -3.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520980635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:12 Heat of formation + Delta-G solvation = 18.681739 kcal Electronic energy + Delta-G solvation = -31866.505211 eV Core-core repulsion = 27800.761283 eV Total energy + Delta-G solvation = -4065.743928 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.06661 -42.17120 -39.03192 -37.51349 -36.84003 -35.97046 -34.64365 -33.65789 -32.12661 -31.45904 -30.78324 -29.54500 -27.47620 -26.55172 -24.98352 -24.48548 -23.61896 -23.09471 -22.69479 -21.68654 -21.41773 -19.70926 -19.05057 -18.46010 -18.20126 -17.54387 -17.16547 -16.89139 -16.38733 -15.88718 -15.78860 -15.62163 -15.32605 -15.18082 -14.90172 -14.76492 -14.71463 -14.52374 -14.30621 -14.04767 -13.97486 -13.51250 -13.39568 -13.26657 -13.18771 -13.02118 -12.92623 -12.55562 -12.48644 -12.33560 -12.22252 -12.17236 -12.04480 -11.83075 -11.56234 -11.49887 -11.45164 -11.40867 -11.09475 -10.80232 -10.69850 -10.02461 -10.00303 -9.77698 -8.32106 -6.35736 0.68150 1.23086 1.31085 1.34179 1.43380 1.59240 1.73211 2.31666 2.46540 2.66099 3.03028 3.31046 3.39618 3.44058 3.61437 3.69346 3.86520 4.00063 4.06514 4.07901 4.12335 4.17546 4.31536 4.37705 4.42606 4.47287 4.50085 4.57874 4.63492 4.65797 4.68196 4.73036 4.74374 4.80065 4.84952 4.88707 4.97818 5.08433 5.09522 5.16791 5.19594 5.24702 5.26268 5.27465 5.38471 5.50565 5.62393 5.66921 5.94425 6.07294 6.21710 6.22613 6.70767 7.28666 7.31237 7.68370 8.83773 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019642 B = 0.002543 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.173369 B =11008.762666 C =11329.464724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.457 5.457 4 C 0.199 3.801 5 C -0.009 4.009 6 C 0.005 3.995 7 C -0.525 4.525 8 H 0.049 0.951 9 C 0.017 3.983 10 N -0.941 5.941 11 Si 0.938 3.062 12 H -0.277 1.277 13 H -0.276 1.276 14 H -0.256 1.256 15 N -0.336 5.336 16 N -0.352 5.352 17 C 0.340 3.660 18 N -0.436 5.436 19 C 0.050 3.950 20 C -0.082 4.082 21 C -0.094 4.094 22 C -0.114 4.114 23 C 0.095 3.905 24 N -0.731 5.731 25 C 0.508 3.492 26 O -0.574 6.574 27 C -0.081 4.081 28 C 0.061 3.939 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.021 0.979 37 H 0.004 0.996 38 H 0.268 0.732 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.411 0.589 48 H 0.117 0.883 49 H 0.092 0.908 50 H 0.075 0.925 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 -3.544 -36.448 38.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.024 4.024 3 N -0.150 5.150 4 C -0.070 4.070 5 C -0.049 4.049 6 C -0.034 4.034 7 C -0.563 4.563 8 H 0.068 0.932 9 C -0.181 4.181 10 N -0.582 5.582 11 Si 0.763 3.237 12 H -0.203 1.203 13 H -0.201 1.201 14 H -0.180 1.180 15 N -0.176 5.176 16 N -0.195 5.195 17 C -0.017 4.017 18 N -0.162 5.162 19 C -0.077 4.077 20 C -0.120 4.120 21 C -0.097 4.097 22 C -0.152 4.152 23 C -0.028 4.028 24 N -0.385 5.385 25 C 0.295 3.705 26 O -0.454 6.454 27 C -0.119 4.119 28 C -0.066 4.066 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.039 0.961 37 H 0.023 0.977 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.121 0.879 46 H 0.108 0.892 47 H 0.250 0.750 48 H 0.135 0.865 49 H 0.110 0.890 50 H 0.093 0.907 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.174 -2.476 -35.891 37.672 hybrid contribution 1.212 0.435 0.529 1.392 sum -9.962 -2.040 -35.362 36.795 Atomic orbital electron populations 1.22053 0.91921 1.04847 1.02356 1.22242 0.97382 0.76828 1.05977 1.46635 1.48684 1.14856 1.04801 1.25338 1.00244 0.88524 0.92916 1.19965 1.00153 1.01724 0.83010 1.19377 0.93449 0.95294 0.95230 1.21269 1.00221 1.39101 0.95710 0.93232 1.25774 1.01971 0.94885 0.95515 1.70019 1.32797 1.42931 1.12403 0.85841 0.79881 0.78068 0.79911 1.20265 1.20111 1.17960 1.73963 1.20734 1.19578 1.03354 1.74511 1.20877 1.20375 1.03782 1.22592 1.02036 0.87547 0.89557 1.58924 1.12302 1.51055 0.93953 1.22367 0.88279 1.01308 0.95726 1.21437 0.98983 1.00341 0.91206 1.21114 0.97208 0.92367 0.99059 1.22783 1.05997 0.97002 0.89392 1.22418 0.97706 0.86225 0.96425 1.46450 1.58327 1.21237 1.12507 1.21335 0.77668 0.89411 0.82120 1.90777 1.44229 1.61308 1.49040 1.21494 0.94934 1.04893 0.90580 1.22231 0.94075 0.93694 0.96610 0.93266 0.91645 0.87445 0.86416 0.88568 0.89564 0.88431 0.96055 0.97737 0.92309 0.93905 0.92011 0.87051 0.90205 0.88491 0.85783 0.87920 0.89241 0.75026 0.86463 0.88971 0.90698 0.95727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.10 2.26 6.63 86.38 0.57 2.83 16 3 N -0.46 -15.17 2.81 -514.85 -1.45 -16.62 16 4 C 0.20 8.04 7.32 137.64 1.01 9.05 16 5 C -0.01 -0.36 5.34 29.85 0.16 -0.20 16 6 C 0.01 0.25 4.02 29.85 0.12 0.37 16 7 C -0.52 -29.81 9.66 25.60 0.25 -29.56 16 8 H 0.05 3.01 7.99 -2.91 -0.02 2.98 16 9 C 0.02 0.97 5.47 84.66 0.46 1.43 16 10 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 11 Si 0.94 45.50 27.47 68.60 1.88 47.38 16 12 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.26 -11.76 6.54 99.48 0.65 -11.11 16 15 N -0.34 -15.56 12.18 -49.53 -0.60 -16.16 16 16 N -0.35 -15.43 12.18 -58.01 -0.71 -16.14 16 17 C 0.34 11.85 6.41 260.12 1.67 13.52 16 18 N -0.44 -11.27 4.65 -705.72 -3.28 -14.55 16 19 C 0.05 1.30 5.17 86.36 0.45 1.75 16 20 C -0.08 -1.19 4.77 30.49 0.15 -1.04 16 21 C -0.09 -1.11 0.55 -52.82 -0.03 -1.14 16 22 C -0.11 -0.24 6.21 31.52 0.20 -0.04 16 23 C 0.10 0.21 7.79 86.86 0.68 0.88 16 24 N -0.73 -8.15 6.25 -459.88 -2.87 -11.03 16 25 C 0.51 9.96 6.74 87.72 0.59 10.55 16 26 O -0.57 -18.46 14.26 -3.04 -0.04 -18.50 16 27 C -0.08 -0.94 4.77 30.49 0.15 -0.79 16 28 C 0.06 1.40 5.15 86.36 0.44 1.85 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.10 2.38 7.78 -2.38 -0.02 2.36 16 34 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 35 H 0.10 3.51 7.87 -2.39 -0.02 3.49 16 36 H 0.02 0.99 7.20 -2.39 -0.02 0.98 16 37 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 38 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.04 1.48 5.78 -2.38 -0.01 1.47 16 40 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 41 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 0.07 7.89 -2.39 -0.02 0.05 16 44 H 0.12 -0.37 7.87 -2.39 -0.02 -0.39 16 45 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 46 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.41 4.09 8.96 -92.71 -0.83 3.26 16 48 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 51 H 0.02 0.77 6.68 -2.39 -0.02 0.75 16 Total: -1.00 -87.20 400.41 0.86 -86.34 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.05 Total: 9.87 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 7.59 Total: 7.42 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -8.61 Total: -132.50 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.38 kcal Total: -87.20 0.86 -86.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520980635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.017 kcal (2) G-P(sol) polarization free energy of solvation -87.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds