Wall clock time and date at job start Wed Apr 1 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46505 * 109.46709 * 2 1 4 4 C 1.39004 * 119.99376 * 179.97438 * 3 2 1 5 5 C 1.39131 * 119.71236 * 0.25313 * 4 3 2 6 6 C 1.38293 * 119.10064 * 180.24689 * 5 4 3 7 7 C 1.50696 * 120.74892 * 179.77673 * 6 5 4 8 8 N 1.46504 * 109.47409 * 269.72062 * 7 6 5 9 9 C 1.34776 * 120.00084 * 179.97438 * 8 7 6 10 10 O 1.21590 * 119.99770 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00049 * 180.27817 * 9 8 7 12 12 C 1.46503 * 120.00038 * 179.72949 * 11 9 8 13 13 C 1.53047 * 109.45602 * 275.02735 * 12 11 9 14 14 C 1.53193 * 109.30835 * 178.60170 * 13 12 11 15 15 N 1.46924 * 108.76532 * 54.65615 * 14 13 12 16 16 C 1.36940 * 120.63239 * 126.40892 * 15 14 13 17 17 H 1.08005 * 119.99886 * 331.81311 * 16 15 14 18 18 C 1.38811 * 120.00239 * 151.82043 * 16 15 14 19 19 N 1.31621 * 120.00177 * 343.07757 * 18 16 15 20 20 Si 1.86798 * 119.99939 * 163.07651 * 18 16 15 21 21 H 1.48505 * 109.47394 * 59.99964 * 20 18 16 22 22 H 1.48500 * 109.47350 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47368 * 299.99830 * 20 18 16 24 24 C 1.46921 * 118.73833 * 306.37714 * 15 14 13 25 25 C 1.53036 * 109.46225 * 154.97367 * 12 11 9 26 26 C 1.38887 * 118.50319 * 359.50802 * 6 5 4 27 27 C 1.38020 * 119.32769 * 0.24875 * 26 6 5 28 28 N 1.31972 * 120.86126 * 0.02562 * 27 26 6 29 29 H 1.08994 * 109.46919 * 299.99772 * 1 2 3 30 30 H 1.08999 * 109.47061 * 60.00176 * 1 2 3 31 31 H 1.09002 * 109.46457 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46919 * 240.00228 * 2 1 3 33 33 H 1.08999 * 109.47061 * 119.99824 * 2 1 3 34 34 H 0.97002 * 120.00041 * 359.97438 * 3 2 1 35 35 H 1.08004 * 120.44932 * 0.02562 * 5 4 3 36 36 H 1.09008 * 109.47222 * 149.72177 * 7 6 5 37 37 H 1.08997 * 109.47115 * 29.72823 * 7 6 5 38 38 H 0.96998 * 119.99854 * 0.02562 * 8 7 6 39 39 H 0.96996 * 119.99857 * 359.72361 * 11 9 8 40 40 H 1.09000 * 109.46135 * 34.99822 * 12 11 9 41 41 H 1.09005 * 109.49477 * 298.56370 * 13 12 11 42 42 H 1.08991 * 109.49869 * 58.66397 * 13 12 11 43 43 H 1.08997 * 109.60206 * 294.86287 * 14 13 12 44 44 H 1.08999 * 109.70265 * 174.50058 * 14 13 12 45 45 H 0.96993 * 120.00113 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.59329 * 293.82583 * 24 15 14 47 47 H 1.08998 * 109.70493 * 173.46895 * 24 15 14 48 48 H 1.09004 * 109.49564 * 301.33871 * 25 12 11 49 49 H 1.08998 * 109.49985 * 61.39613 * 25 12 11 50 50 H 1.08004 * 120.33510 * 180.22534 * 26 6 5 51 51 H 1.08006 * 119.56798 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 3.3850 1.6352 0.0005 5 6 4.2838 0.5732 -0.0043 6 6 5.6406 0.8403 0.0015 7 6 6.6468 -0.2816 0.0017 8 7 6.9728 -0.6450 1.3830 9 6 7.8571 -1.6318 1.6293 10 8 8.3846 -2.2201 0.7051 11 7 8.1528 -1.9700 2.9000 12 6 9.1096 -3.0466 3.1677 13 6 8.3842 -4.3938 3.1322 14 6 9.3938 -5.5194 3.3779 15 7 10.1051 -5.2503 4.6350 16 6 10.1556 -6.1957 5.6244 17 1 9.3584 -6.9177 5.7226 18 6 11.2313 -6.2261 6.5012 19 7 12.3438 -5.5904 6.2003 20 14 11.0999 -7.1690 8.1084 21 1 10.8303 -8.6010 7.8216 22 1 12.3749 -7.0468 8.8598 23 1 9.9902 -6.6096 8.9213 24 6 10.7618 -3.9477 4.8102 25 6 9.7370 -2.8397 4.5482 26 6 6.0552 2.1659 0.0015 27 6 5.1085 3.1703 0.0010 28 7 3.8198 2.8859 0.0010 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.3880 2.1185 -0.0004 35 1 3.9266 -0.4461 -0.0088 36 1 7.5520 0.0421 -0.5122 37 1 6.2269 -1.1462 -0.5122 38 1 6.5517 -0.1760 2.1202 39 1 7.7323 -1.5004 3.6372 40 1 9.8913 -3.0350 2.4082 41 1 7.6189 -4.4154 3.9082 42 1 7.9178 -4.5302 2.1567 43 1 10.1075 -5.5566 2.5550 44 1 8.8706 -6.4728 3.4511 45 1 13.0956 -5.6119 6.8128 46 1 11.5871 -3.8565 4.1040 47 1 11.1410 -3.8613 5.8284 48 1 10.2334 -1.8698 4.5804 49 1 8.9588 -2.8755 5.3105 50 1 7.1077 2.4083 0.0023 51 1 5.4266 4.2024 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001527462192.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:10 Heat of formation + Delta-G solvation = 27.345432 kcal Electronic energy + Delta-G solvation = -29686.344502 eV Core-core repulsion = 25620.976261 eV Total energy + Delta-G solvation = -4065.368242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.73832 -39.84886 -37.55855 -36.85918 -35.36070 -34.30999 -32.76748 -31.93202 -31.75188 -30.07997 -29.33275 -28.92107 -26.90837 -24.84094 -24.32138 -22.42389 -22.26423 -22.10452 -21.70498 -20.59653 -19.42171 -18.39526 -17.51029 -17.19988 -16.67332 -16.20913 -16.02055 -15.68948 -15.39613 -14.99462 -14.87605 -14.67770 -14.49227 -14.15060 -14.05864 -13.70786 -13.52813 -13.17823 -12.95307 -12.88008 -12.65451 -12.54791 -12.32386 -12.30534 -12.23936 -11.93923 -11.43099 -11.09458 -10.83434 -10.70430 -10.63005 -10.47709 -10.25975 -10.18671 -10.01618 -9.87429 -9.81931 -9.71494 -9.51217 -9.19712 -8.58325 -8.41774 -8.10881 -6.66449 -5.78052 -3.20155 0.84643 1.05231 2.70115 2.86843 3.37717 3.39054 3.44749 3.45838 3.60680 4.14596 4.33308 4.41027 4.43368 4.50675 4.54044 4.66282 4.80454 4.90212 4.92472 5.20775 5.29169 5.34788 5.35205 5.37500 5.44287 5.48931 5.51637 5.54417 5.57607 5.64261 5.92734 6.06105 6.11084 6.21260 6.31702 6.36332 6.38783 6.52416 6.59859 6.60463 6.63921 6.82891 6.92112 7.01507 7.12638 7.14837 7.34198 7.63960 7.80345 7.81452 8.15176 8.46308 8.76001 9.22370 9.85667 10.42966 11.30875 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.001777 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.953527 B =15749.363574 C =16538.374498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 N -0.727 5.727 4 C 0.399 3.601 5 C -0.219 4.219 6 C -0.019 4.019 7 C 0.181 3.819 8 N -0.747 5.747 9 C 0.703 3.297 10 O -0.590 6.590 11 N -0.738 5.738 12 C 0.169 3.831 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.175 3.825 25 C -0.146 4.146 26 C -0.216 4.216 27 C 0.148 3.852 28 N -0.543 5.543 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.404 0.596 35 H 0.132 0.868 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.395 0.605 39 H 0.391 0.609 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.021 0.979 44 H 0.055 0.945 45 H 0.254 0.746 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.059 0.941 50 H 0.134 0.866 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.525 17.430 -12.197 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 N -0.361 5.361 4 C 0.164 3.836 5 C -0.245 4.245 6 C -0.027 4.027 7 C 0.056 3.944 8 N -0.404 5.404 9 C 0.403 3.597 10 O -0.468 6.468 11 N -0.392 5.392 12 C 0.065 3.935 13 C -0.179 4.179 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.239 4.239 27 C -0.010 4.010 28 N -0.261 5.261 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.240 0.760 35 H 0.150 0.850 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.228 0.772 39 H 0.224 0.776 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.039 0.961 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.077 0.923 50 H 0.152 0.848 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.502 17.282 -12.968 29.785 hybrid contribution -0.116 -0.318 1.517 1.554 sum -20.618 16.964 -11.451 29.052 Atomic orbital electron populations 1.21974 0.94082 1.03415 1.02746 1.21376 0.94906 0.82320 1.01702 1.44532 1.02624 1.07992 1.80982 1.18337 0.85537 0.89056 0.90675 1.21329 0.92699 0.99411 1.11047 1.20064 0.93486 0.94641 0.94514 1.19965 0.96426 0.94628 0.83343 1.45082 1.47780 1.39653 1.07926 1.15987 0.79717 0.80028 0.84016 1.90929 1.56280 1.56203 1.43372 1.45545 1.48431 1.39915 1.05261 1.20917 0.89794 0.84735 0.98031 1.22390 0.99372 0.95872 1.00310 1.20877 0.92901 0.95034 0.89142 1.44086 1.61831 1.12392 1.13225 1.19148 1.02120 1.10364 1.06524 0.91721 1.25057 0.94577 0.99693 1.00382 1.70013 1.02386 1.46507 1.35869 0.86363 0.76730 0.79792 0.83828 1.20895 1.21661 1.21091 1.20737 0.90506 0.81714 1.02242 1.22547 1.00796 1.00662 0.94625 1.21813 1.01351 0.92606 1.08132 1.22397 0.86691 0.99636 0.92245 1.67164 1.18458 1.20017 1.20480 0.91828 0.91862 0.90491 0.91803 0.91758 0.76049 0.84977 0.90314 0.90575 0.77163 0.77627 0.90045 0.92504 0.92721 0.96154 0.92627 0.93561 0.96072 0.89058 0.92771 0.92266 0.84791 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.55 10.03 37.16 0.37 -0.17 16 2 C 0.12 0.60 5.61 -4.03 -0.02 0.58 16 3 N -0.73 -4.99 5.73 -60.41 -0.35 -5.34 16 4 C 0.40 3.61 7.65 -155.02 -1.19 2.42 16 5 C -0.22 -1.88 9.03 -39.23 -0.35 -2.23 16 6 C -0.02 -0.16 5.28 -104.36 -0.55 -0.71 16 7 C 0.18 1.77 5.85 -5.19 -0.03 1.74 16 8 N -0.75 -7.99 5.55 -66.41 -0.37 -8.36 16 9 C 0.70 10.44 8.53 -86.92 -0.74 9.70 16 10 O -0.59 -11.28 16.01 5.29 0.08 -11.20 16 11 N -0.74 -10.45 5.08 -58.63 -0.30 -10.75 16 12 C 0.17 2.98 2.42 -67.89 -0.16 2.81 16 13 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 14 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 15 N -0.59 -14.85 2.99 -172.33 -0.52 -15.36 16 16 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 19 N -0.90 -26.08 11.19 55.49 0.62 -25.45 16 20 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 25 C -0.15 -2.68 5.55 -26.61 -0.15 -2.83 16 26 C -0.22 -1.70 9.81 -39.42 -0.39 -2.09 16 27 C 0.15 1.19 11.17 -17.57 -0.20 1.00 16 28 N -0.54 -5.30 10.39 -12.44 -0.13 -5.43 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.31 7.92 -51.93 -0.41 -0.10 16 33 H 0.06 0.33 7.94 -51.93 -0.41 -0.08 16 34 H 0.40 2.47 8.60 -40.82 -0.35 2.12 16 35 H 0.13 1.00 6.71 -52.48 -0.35 0.65 16 36 H 0.08 0.81 8.10 -51.92 -0.42 0.39 16 37 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.39 3.38 8.48 -40.82 -0.35 3.03 16 39 H 0.39 4.44 8.62 -40.82 -0.35 4.09 16 40 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 48 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 51 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 412.36 15.07 6.21 6.21 Total: -1.00 -33.35 412.36 -11.98 -45.33 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -8.39 Total: 6.15 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -3.83 Total: 7.67 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -1.04 Total: -70.69 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.35 -11.98 -45.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527462192.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.676 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds