Wall clock time and date at job start Wed Apr 1 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35970 * 126.06709 * 2 1 4 4 C 1.35707 * 107.55006 * 179.97438 * 3 2 1 5 5 N 1.40801 * 126.06533 * 179.97438 * 4 3 2 6 6 C 1.48563 * 111.00057 * 300.12540 * 5 4 3 7 7 C 1.54378 * 104.59814 * 200.96163 * 6 5 4 8 8 C 1.54267 * 105.05606 * 23.85366 * 7 6 5 9 9 H 1.09001 * 110.31946 * 119.00231 * 8 7 6 10 10 N 1.46501 * 110.32277 * 241.10270 * 8 7 6 11 11 C 1.34779 * 120.00010 * 273.55108 * 10 8 7 12 12 O 1.21585 * 119.99975 * 5.07223 * 11 10 8 13 13 N 1.34781 * 119.99712 * 185.07807 * 11 10 8 14 14 C 1.46918 * 120.63219 * 354.95745 * 13 11 10 15 15 C 1.53194 * 108.77659 * 126.37388 * 14 13 11 16 16 C 1.53040 * 109.33866 * 54.61689 * 15 14 13 17 17 C 1.50700 * 109.45988 * 178.62968 * 16 15 14 18 18 H 1.08000 * 120.00082 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99751 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00260 * 0.02562 * 19 17 16 21 21 Si 1.86809 * 119.99934 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46737 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46962 * 120.00182 * 21 19 17 24 24 H 1.48498 * 109.47168 * 240.00175 * 21 19 17 25 25 C 1.53035 * 109.54048 * 298.68805 * 16 15 14 26 26 C 1.46923 * 120.62889 * 174.94034 * 13 11 10 27 27 C 1.48562 * 110.99816 * 184.71117 * 5 4 3 28 28 C 1.40221 * 107.86449 * 0.23125 * 4 3 2 29 29 N 1.30857 * 108.36330 * 359.60926 * 28 4 3 30 30 H 1.08995 * 109.47444 * 90.00112 * 1 2 3 31 31 H 1.09003 * 109.46686 * 209.99882 * 1 2 3 32 32 H 1.08998 * 109.47490 * 329.99967 * 1 2 3 33 33 H 1.07994 * 126.22588 * 0.02562 * 3 2 1 34 34 H 1.09002 * 110.40728 * 82.18181 * 6 5 4 35 35 H 1.08996 * 110.41423 * 319.74378 * 6 5 4 36 36 H 1.09003 * 110.32136 * 264.96339 * 7 6 5 37 37 H 1.08992 * 110.32678 * 142.74991 * 7 6 5 38 38 H 0.96993 * 119.99935 * 93.54899 * 10 8 7 39 39 H 1.09006 * 109.58966 * 6.58558 * 14 13 11 40 40 H 1.08996 * 109.70603 * 246.23007 * 14 13 11 41 41 H 1.08994 * 109.49925 * 174.58720 * 15 14 13 42 42 H 1.09000 * 109.49624 * 294.65305 * 15 14 13 43 43 H 1.09001 * 109.45672 * 58.67144 * 16 15 14 44 44 H 0.97001 * 120.00058 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.47110 * 301.36368 * 25 16 15 46 46 H 1.08995 * 109.52327 * 181.30029 * 25 16 15 47 47 H 1.09005 * 109.58583 * 353.41596 * 26 13 11 48 48 H 1.09007 * 109.58376 * 113.69465 * 26 13 11 49 49 H 1.09003 * 110.40969 * 40.26111 * 27 5 4 50 50 H 1.08998 * 110.40932 * 277.81765 * 27 5 4 51 51 H 1.08004 * 125.81289 * 179.75473 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2655 1.0991 0.0000 4 6 3.5523 0.6681 0.0006 5 7 4.6998 1.4841 0.0003 6 6 4.7305 2.3591 -1.1999 7 6 6.2132 2.7620 -1.3499 8 6 7.0054 1.6481 -0.6346 9 1 7.6713 1.1466 -1.3369 10 7 7.7719 2.2058 0.4823 11 6 9.0021 2.7133 0.2686 12 8 9.4387 2.7928 -0.8633 13 7 9.7484 3.1324 1.3098 14 6 9.1945 3.1455 2.6705 15 6 10.1357 2.3651 3.5935 16 6 11.5481 2.9441 3.4842 17 6 12.4693 2.2001 4.4163 18 1 12.0860 1.3947 5.0252 19 6 13.8016 2.5469 4.4908 20 7 14.2684 3.5273 3.7489 21 14 14.9438 1.6241 5.6457 22 1 14.1784 0.5733 6.3635 23 1 16.0355 0.9924 4.8619 24 1 15.5253 2.5727 6.6291 25 6 12.0508 2.7991 2.0460 26 6 11.1313 3.5845 1.1056 27 6 5.9347 0.6660 -0.1128 28 6 3.5363 -0.7340 -0.0044 29 7 2.2898 -1.1321 0.0006 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.9370 2.1279 0.0004 34 1 4.1107 3.2419 -1.0427 35 1 4.3950 1.8098 -2.0796 36 1 6.3946 3.7236 -0.8697 37 1 6.4890 2.8059 -2.4034 38 1 7.3941 2.2099 1.3756 39 1 8.2110 2.6754 2.6694 40 1 9.1077 4.1736 3.0220 41 1 9.7871 2.4480 4.6229 42 1 10.1486 1.3162 3.2972 43 1 11.5301 3.9992 3.7573 44 1 15.2057 3.7715 3.8016 45 1 12.0461 1.7463 1.7639 46 1 13.0654 3.1906 1.9736 47 1 11.4258 3.4040 0.0717 48 1 11.2038 4.6497 1.3255 49 1 5.7876 -0.1482 -0.8224 50 1 6.2217 0.2741 0.8629 51 1 4.4049 -1.3759 -0.0091 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647132133.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:37 Heat of formation + Delta-G solvation = 48.312632 kcal Electronic energy + Delta-G solvation = -30655.868561 eV Core-core repulsion = 26591.409525 eV Total energy + Delta-G solvation = -4064.459036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.24566 -41.40708 -39.67579 -38.31221 -35.58485 -35.25850 -33.89938 -32.90570 -32.14196 -31.36007 -30.17934 -28.94480 -27.77728 -26.89022 -24.79081 -23.97169 -23.30928 -22.66169 -21.72865 -21.04667 -20.92505 -20.34059 -19.04491 -18.42232 -18.25272 -17.56325 -16.58821 -16.47653 -16.41605 -16.20346 -16.03307 -15.44135 -15.28001 -15.13078 -14.87369 -14.62541 -14.58500 -14.20568 -13.99588 -13.97693 -13.67807 -13.39238 -13.36474 -13.25040 -12.99723 -12.91610 -12.79508 -12.73932 -12.42016 -12.31054 -12.14057 -11.96645 -11.88476 -11.72448 -11.40635 -11.24198 -10.89367 -10.76343 -10.58120 -10.38999 -10.31415 -10.11663 -9.33647 -8.61372 -8.05315 -6.19009 0.90046 1.41139 1.44161 1.54088 1.64243 1.74762 1.75175 2.21667 2.45502 2.98699 3.01246 3.21243 3.53439 3.71011 3.88363 4.01859 4.10539 4.24925 4.27489 4.28830 4.31324 4.36924 4.40050 4.48104 4.53898 4.62657 4.64675 4.70544 4.73714 4.75645 4.77616 4.83397 4.91133 4.94864 5.01561 5.05351 5.20271 5.23109 5.28012 5.36392 5.50414 5.54180 5.61607 5.69011 5.82365 6.01605 6.05801 6.13400 6.15970 6.34903 6.41333 6.70198 6.92925 7.07530 7.49039 7.63841 8.98147 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.002010 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.145915 B =13925.631495 C =14847.575697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.379 5.379 3 C 0.047 3.953 4 C -0.073 4.073 5 N -0.436 5.436 6 C 0.045 3.955 7 C -0.130 4.130 8 C 0.160 3.840 9 H 0.079 0.921 10 N -0.723 5.723 11 C 0.704 3.296 12 O -0.637 6.637 13 N -0.623 5.623 14 C 0.119 3.881 15 C -0.115 4.115 16 C 0.045 3.955 17 C -0.530 4.530 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.915 5.915 21 Si 0.950 3.050 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.281 1.281 25 C -0.110 4.110 26 C 0.140 3.860 27 C 0.035 3.965 28 C 0.016 3.984 29 N -0.321 5.321 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.203 0.797 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.407 0.593 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.003 0.997 44 H 0.260 0.740 45 H 0.021 0.979 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.077 0.923 50 H 0.097 0.903 51 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.128 -3.269 -8.576 30.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.164 5.164 3 C -0.100 4.100 4 C -0.180 4.180 5 N -0.156 5.156 6 C -0.081 4.081 7 C -0.170 4.170 8 C 0.054 3.946 9 H 0.098 0.902 10 N -0.382 5.382 11 C 0.405 3.595 12 O -0.519 6.519 13 N -0.358 5.358 14 C -0.003 4.003 15 C -0.153 4.153 16 C 0.027 3.973 17 C -0.568 4.568 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.555 5.555 21 Si 0.776 3.224 22 H -0.192 1.192 23 H -0.211 1.211 24 H -0.207 1.207 25 C -0.149 4.149 26 C 0.017 3.983 27 C -0.093 4.093 28 C -0.171 4.171 29 N -0.144 5.144 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.219 0.781 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.247 0.753 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.021 0.979 44 H 0.069 0.931 45 H 0.040 0.960 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.095 0.905 50 H 0.115 0.885 51 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -29.628 -3.819 -8.905 31.172 hybrid contribution 1.748 -0.135 0.346 1.787 sum -27.880 -3.954 -8.559 29.431 Atomic orbital electron populations 1.22168 0.71747 1.05869 1.04568 1.48850 1.07759 1.02941 1.56833 1.22528 0.89488 0.94267 1.03742 1.19284 0.91851 0.91099 1.15717 1.63065 0.99086 1.16280 1.37130 1.23215 0.96361 0.97579 0.90987 1.22733 0.94243 0.98946 1.01062 1.21510 0.91749 0.93697 0.87680 0.90241 1.45236 1.15264 1.65025 1.12635 1.15999 0.81393 0.78139 0.83933 1.90831 1.73958 1.64429 1.22706 1.47380 1.13683 1.67750 1.07035 1.21768 0.96818 1.01185 0.80550 1.21862 0.95893 0.98717 0.98874 1.18603 0.91781 0.94935 0.92023 1.21619 0.94495 1.17623 1.23061 0.92919 1.25709 0.99788 0.95930 0.97230 1.69987 1.14815 1.29881 1.40823 0.85633 0.78934 0.78775 0.79044 1.19186 1.21123 1.20698 1.21770 0.99914 0.96940 0.96314 1.21390 0.79857 0.97551 0.99500 1.23414 0.88280 0.94809 1.02785 1.24234 0.95728 0.94888 1.02236 1.77237 1.02100 1.10192 1.24880 0.89554 0.89326 0.86803 0.78068 0.88514 0.92885 0.91358 0.90565 0.75328 0.88224 0.90952 0.90972 0.93473 0.97889 0.93113 0.96003 0.90990 0.91511 0.92429 0.90464 0.88459 0.79149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.48 127.77 1.47 2.01 16 2 N -0.38 -5.50 4.04 -368.40 -1.49 -6.99 16 3 C 0.05 0.63 11.24 83.47 0.94 1.57 16 4 C -0.07 -1.21 5.58 37.59 0.21 -1.00 16 5 N -0.44 -7.01 5.52 -681.93 -3.76 -10.78 16 6 C 0.04 0.65 6.21 86.45 0.54 1.18 16 7 C -0.13 -2.47 6.78 31.49 0.21 -2.25 16 8 C 0.16 3.39 3.32 45.89 0.15 3.55 16 9 H 0.08 1.98 7.72 -2.39 -0.02 1.96 16 10 N -0.72 -18.10 4.91 -453.52 -2.23 -20.33 16 11 C 0.70 24.28 8.29 179.05 1.48 25.77 16 12 O -0.64 -26.61 15.53 -3.98 -0.06 -26.67 16 13 N -0.62 -22.08 2.97 -836.91 -2.49 -24.56 16 14 C 0.12 3.58 6.43 86.36 0.56 4.13 16 15 C -0.12 -4.29 5.30 30.67 0.16 -4.13 16 16 C 0.05 2.16 2.06 -11.51 -0.02 2.14 16 17 C -0.53 -28.48 8.56 25.60 0.22 -28.26 16 18 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 19 C 0.01 0.65 5.30 84.65 0.45 1.10 16 20 N -0.92 -52.22 11.30 21.45 0.24 -51.97 16 21 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C -0.11 -5.28 5.15 30.67 0.16 -5.12 16 26 C 0.14 5.79 6.42 86.36 0.55 6.34 16 27 C 0.03 0.57 5.32 86.45 0.46 1.03 16 28 C 0.02 0.29 10.72 85.32 0.92 1.21 16 29 N -0.32 -6.51 12.57 -56.78 -0.71 -7.22 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.20 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 0.74 7.98 -2.39 -0.02 0.72 16 36 H 0.07 1.48 7.95 -2.39 -0.02 1.46 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.41 8.59 6.01 -92.71 -0.56 8.03 16 39 H 0.10 2.23 5.57 -2.38 -0.01 2.21 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 3.89 6.03 -2.39 -0.01 3.88 16 47 H 0.07 2.86 7.03 -2.38 -0.02 2.84 16 48 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 49 H 0.08 1.11 6.79 -2.39 -0.02 1.09 16 50 H 0.10 1.56 7.99 -2.39 -0.02 1.54 16 51 H 0.19 2.79 7.03 -2.91 -0.02 2.77 16 Total: -1.00 -72.30 399.65 0.35 -71.95 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.38 Total: 21.91 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 8.45 Total: 9.25 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -10.44 Total: -121.85 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.06 Total: -26.67 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.30 0.35 -71.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647132133.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.259 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds