Wall clock time and date at job start Wed Apr 1 2020 06:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36735 * 127.14161 * 2 1 4 4 C 1.50705 * 126.34313 * 0.02562 * 3 2 1 5 5 H 1.08999 * 108.44942 * 1.84444 * 4 3 2 6 6 C 1.51784 * 108.61690 * 119.71471 * 4 3 2 7 7 C 1.52986 * 110.88114 * 188.12309 * 6 4 3 8 8 N 1.47192 * 108.66173 * 273.52881 * 7 6 4 9 9 C 1.33372 * 120.42742 * 71.95852 * 8 7 6 10 10 O 1.21286 * 119.88642 * 179.73464 * 9 8 7 11 11 C 1.51419 * 120.21779 * 359.71869 * 9 8 7 12 12 C 1.51795 * 108.61359 * 243.97172 * 4 3 2 13 13 N 1.30293 * 107.30709 * 179.73519 * 3 2 1 14 14 N 1.28526 * 110.05543 * 0.26418 * 13 3 2 15 15 C 1.31210 * 109.85779 * 0.02562 * 14 13 3 16 16 N 1.38588 * 126.47145 * 180.02562 * 15 14 13 17 17 C 1.46903 * 110.99922 * 236.01720 * 16 15 14 18 18 C 1.50695 * 109.47092 * 189.99707 * 17 16 15 19 19 H 1.08001 * 120.00326 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99937 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99863 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99954 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47067 * 59.99531 * 22 20 18 24 24 H 1.48493 * 109.46783 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46679 * 299.99633 * 22 20 18 26 26 C 1.46898 * 110.99843 * 359.97114 * 16 15 14 27 27 C 1.53003 * 109.47132 * 70.00403 * 26 16 15 28 28 C 1.52999 * 117.49538 * 243.74660 * 27 26 16 29 29 C 1.52999 * 117.49791 * 175.08350 * 27 26 16 30 30 H 1.08993 * 109.47056 * 89.99575 * 1 2 3 31 31 H 1.08998 * 109.47343 * 209.99930 * 1 2 3 32 32 H 1.09007 * 109.46535 * 329.99783 * 1 2 3 33 33 H 1.08998 * 109.19738 * 67.75456 * 6 4 3 34 34 H 1.09002 * 109.19192 * 308.48182 * 6 4 3 35 35 H 1.09003 * 109.60447 * 33.28495 * 7 6 4 36 36 H 1.09005 * 109.59867 * 153.77707 * 7 6 4 37 37 H 0.97006 * 119.78283 * 251.93647 * 8 7 6 38 38 H 1.08994 * 109.63595 * 48.46332 * 11 9 8 39 39 H 1.09000 * 109.63650 * 168.86459 * 11 9 8 40 40 H 1.08997 * 109.22294 * 51.75171 * 12 4 3 41 41 H 1.08991 * 109.19024 * 292.37884 * 12 4 3 42 42 H 1.08991 * 109.47155 * 310.00350 * 17 16 15 43 43 H 1.09001 * 109.46925 * 70.00087 * 17 16 15 44 44 H 0.97003 * 120.00113 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.46874 * 190.00322 * 26 16 15 46 46 H 1.09002 * 109.47502 * 310.00004 * 26 16 15 47 47 H 1.09002 * 115.54534 * 29.41219 * 27 26 16 48 48 H 1.08992 * 117.50216 * 359.97438 * 28 27 26 49 49 H 1.08998 * 117.49479 * 145.02297 * 28 27 26 50 50 H 1.08994 * 117.50011 * 214.97432 * 29 27 26 51 51 H 1.09002 * 117.50070 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8622 2.5349 0.0005 5 1 0.7733 2.5718 0.0342 6 6 2.4084 3.2018 1.2498 7 6 1.8405 4.6136 1.4070 8 7 2.6847 5.5483 0.6453 9 6 2.6543 5.5530 -0.6880 10 8 3.3504 6.3308 -1.3057 11 6 1.7537 4.5905 -1.4331 12 6 2.3292 3.1792 -1.2921 13 7 3.5162 0.6479 0.0057 14 7 3.5212 -0.6373 0.0038 15 6 2.2888 -1.0878 -0.0039 16 7 1.8977 -2.4174 -0.0077 17 6 1.0204 -2.7048 -1.1504 18 6 0.4212 -4.0782 -0.9907 19 1 0.6671 -4.6775 -0.1265 20 6 -0.4410 -4.5698 -1.9478 21 7 -0.7408 -3.8398 -2.9998 22 14 -1.1843 -6.2721 -1.7495 23 1 -1.9752 -6.3236 -0.4936 24 1 -2.0710 -6.5625 -2.9046 25 1 -0.0979 -7.2829 -1.6922 26 6 3.0648 -3.3094 -0.0026 27 6 3.7623 -3.2289 1.3568 28 6 5.1902 -2.6803 1.3868 29 6 4.9393 -4.1747 1.6041 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8901 0.5139 33 1 3.4947 3.2580 1.1802 34 1 2.1364 2.6069 2.1217 35 1 0.8216 4.6430 1.0207 36 1 1.8432 4.8936 2.4604 37 1 3.2668 6.1651 1.1163 38 1 0.7513 4.6215 -1.0061 39 1 1.7119 4.8685 -2.4862 40 1 2.0003 2.5716 -2.1352 41 1 3.4177 3.2338 -1.2923 42 1 0.2230 -1.9630 -1.1918 43 1 1.6005 -2.6664 -2.0725 44 1 -1.3471 -4.1857 -3.6734 45 1 2.7399 -4.3339 -0.1842 46 1 3.7589 -3.0042 -0.7857 47 1 3.1162 -2.9972 2.2036 48 1 5.6329 -2.3771 0.4380 49 1 5.4838 -2.0881 2.2535 50 1 5.0679 -4.5649 2.6136 51 1 5.2170 -4.8540 0.7981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647658904.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:46 Heat of formation + Delta-G solvation = 70.695065 kcal Electronic energy + Delta-G solvation = -31724.360474 eV Core-core repulsion = 27660.872013 eV Total energy + Delta-G solvation = -4063.488461 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.53786 -40.32870 -37.91886 -37.07239 -35.73690 -34.67718 -34.02927 -32.75510 -31.55580 -29.33354 -27.88639 -27.16110 -26.46638 -25.52948 -24.32526 -22.33114 -22.20065 -21.81501 -20.64185 -20.16357 -19.88563 -19.33787 -17.50412 -17.22196 -16.92185 -16.36428 -15.86111 -15.54451 -15.37533 -14.90020 -14.65899 -14.37615 -14.30548 -14.15863 -13.93479 -13.73695 -13.29563 -13.13322 -12.96241 -12.77384 -12.58490 -12.47896 -11.98729 -11.90762 -11.73443 -11.53475 -11.16408 -11.14594 -11.06712 -11.01441 -10.98462 -10.88160 -10.60406 -10.32078 -10.05203 -9.94802 -9.83414 -9.67322 -9.60601 -9.43139 -9.38257 -8.98565 -8.63655 -7.43169 -6.27979 -4.31920 2.24753 2.49714 2.71303 3.06966 3.20145 3.25270 3.27279 3.37841 4.16195 4.22150 4.24045 4.29856 4.38448 4.52337 4.55139 4.83942 4.89929 4.91992 5.03551 5.09017 5.15977 5.19578 5.22063 5.22993 5.42644 5.43291 5.48686 5.51852 5.60165 5.69945 5.73776 5.78087 5.93067 5.96405 6.01571 6.02574 6.17058 6.27536 6.35613 6.40279 6.51876 6.56157 6.58950 6.78880 6.89942 6.95560 7.01342 7.12215 7.54064 7.65502 7.82797 8.03986 8.20010 8.73797 9.31457 9.34759 10.82546 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012134 B = 0.002997 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.948475 B = 9340.536917 C =10954.121459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.483 5.483 3 C 0.144 3.856 4 C 0.015 3.985 5 H 0.082 0.918 6 C -0.132 4.132 7 C 0.110 3.890 8 N -0.724 5.724 9 C 0.520 3.480 10 O -0.554 6.554 11 C -0.137 4.137 12 C -0.103 4.103 13 N -0.279 5.279 14 N -0.332 5.332 15 C 0.387 3.613 16 N -0.451 5.451 17 C 0.193 3.807 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.109 3.891 27 C -0.135 4.135 28 C -0.154 4.154 29 C -0.190 4.190 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.005 0.995 44 H 0.266 0.734 45 H 0.099 0.901 46 H 0.047 0.953 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.086 0.914 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 13.111 9.360 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.179 5.179 3 C -0.124 4.124 4 C -0.006 4.006 5 H 0.100 0.900 6 C -0.171 4.171 7 C -0.014 4.014 8 N -0.377 5.377 9 C 0.307 3.693 10 O -0.432 6.432 11 C -0.177 4.177 12 C -0.142 4.142 13 N -0.119 5.119 14 N -0.177 5.177 15 C 0.031 3.969 16 N -0.173 5.173 17 C 0.069 3.931 18 C -0.558 4.558 19 H 0.087 0.913 20 C -0.141 4.141 21 N -0.532 5.532 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.018 4.018 27 C -0.154 4.154 28 C -0.191 4.191 29 C -0.228 4.228 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.236 0.764 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.075 0.925 45 H 0.117 0.883 46 H 0.066 0.934 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.099 0.901 50 H 0.104 0.896 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.365 13.210 9.170 16.254 hybrid contribution -1.554 -0.799 -0.297 1.773 sum 0.810 12.410 8.873 15.277 Atomic orbital electron populations 1.22089 0.75735 1.04523 1.04126 1.45918 1.08408 1.05727 1.57806 1.24224 0.87536 0.90677 1.09917 1.19126 1.00299 0.85375 0.95810 0.90002 1.21847 1.02985 0.95048 0.97209 1.21790 0.94378 0.88448 0.96811 1.45969 1.45272 1.39779 1.06663 1.20602 0.82822 0.83431 0.82470 1.90756 1.43951 1.41107 1.67396 1.21996 0.99047 0.94507 1.02181 1.21228 1.02599 0.93397 0.96940 1.73808 1.17164 1.03812 1.17079 1.74661 1.15404 1.02171 1.25487 1.23154 0.86103 0.88418 0.99190 1.58902 1.18443 0.95131 1.44869 1.20038 0.90344 0.98579 0.84101 1.20999 1.27419 0.99887 1.07505 0.91275 1.24960 0.96189 0.98100 0.94822 1.69929 1.35324 1.37481 1.10457 0.86475 0.79168 0.83683 0.77679 1.19990 1.21203 1.19960 1.21570 0.88728 0.97061 0.94452 1.22146 0.90535 1.03780 0.98907 1.22817 0.99238 0.94306 1.02726 1.22974 1.04140 0.93724 1.01916 0.90106 0.88237 0.90219 0.89634 0.90242 0.90346 0.89083 0.76422 0.89153 0.88058 0.90158 0.90140 0.94234 0.97720 0.92466 0.88254 0.93434 0.88370 0.88597 0.90088 0.89566 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 9.13 59.85 0.55 1.59 16 2 N -0.48 -7.94 3.21 -121.46 -0.39 -8.33 16 3 C 0.14 2.17 6.39 -154.02 -0.98 1.19 16 4 C 0.01 0.15 2.08 -93.00 -0.19 -0.04 16 5 H 0.08 0.64 6.58 -51.93 -0.34 0.30 16 6 C -0.13 -1.09 4.96 -27.36 -0.14 -1.23 16 7 C 0.11 0.60 6.47 -3.67 -0.02 0.58 16 8 N -0.72 -5.61 5.27 -59.90 -0.32 -5.93 16 9 C 0.52 5.63 7.06 -11.26 -0.08 5.55 16 10 O -0.55 -8.49 17.92 5.55 0.10 -8.39 16 11 C -0.14 -1.19 5.57 -27.50 -0.15 -1.34 16 12 C -0.10 -1.07 4.89 -27.31 -0.13 -1.21 16 13 N -0.28 -5.11 12.18 32.99 0.40 -4.70 16 14 N -0.33 -6.61 9.60 30.32 0.29 -6.32 16 15 C 0.39 7.61 6.82 -318.87 -2.17 5.43 16 16 N -0.45 -9.34 4.53 -175.88 -0.80 -10.13 16 17 C 0.19 4.56 4.53 -4.98 -0.02 4.54 16 18 C -0.52 -13.18 8.31 -34.44 -0.29 -13.46 16 19 H 0.07 1.73 7.23 -52.49 -0.38 1.35 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 22 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 C 0.11 2.12 4.78 -3.82 -0.02 2.10 16 27 C -0.13 -2.29 5.06 -90.62 -0.46 -2.75 16 28 C -0.15 -2.41 9.10 -26.69 -0.24 -2.65 16 29 C -0.19 -2.73 10.26 -26.69 -0.27 -3.00 16 30 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 31 H 0.10 1.47 7.76 -51.93 -0.40 1.07 16 32 H 0.08 0.73 7.17 -51.92 -0.37 0.36 16 33 H 0.09 0.88 8.05 -51.93 -0.42 0.47 16 34 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 35 H 0.08 0.33 6.71 -51.93 -0.35 -0.02 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.40 2.74 8.91 -40.82 -0.36 2.38 16 38 H 0.09 0.55 6.77 -51.93 -0.35 0.20 16 39 H 0.10 0.89 8.13 -51.93 -0.42 0.47 16 40 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 42 H 0.04 0.94 5.20 -51.93 -0.27 0.67 16 43 H 0.00 0.13 8.12 -51.93 -0.42 -0.29 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 45 H 0.10 2.02 6.60 -51.93 -0.34 1.67 16 46 H 0.05 0.97 7.49 -51.93 -0.39 0.58 16 47 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 48 H 0.10 1.61 8.03 -51.93 -0.42 1.19 16 49 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 401.23 15.07 6.05 6.05 Total: -1.00 -32.41 401.23 -11.82 -44.23 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.14 Total: 5.31 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -4.73 Total: -3.20 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: -0.07 Total: -58.99 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.10 Total: -8.39 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.41 -11.82 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647658904.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.921 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds