Wall clock time and date at job start Wed Apr 1 2020 04:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47204 * 2 1 4 4 C 1.36745 * 127.13848 * 88.14552 * 3 2 1 5 5 C 1.50699 * 126.34751 * 0.02562 * 4 3 2 6 6 H 1.09007 * 109.73299 * 0.40353 * 5 4 3 7 7 C 1.53343 * 109.60201 * 239.99903 * 5 4 3 8 8 C 1.53068 * 108.42263 * 172.71353 * 7 5 4 9 9 C 1.50177 * 109.89445 * 48.89639 * 8 7 5 10 10 O 1.21283 * 118.24285 * 162.43865 * 9 8 7 11 11 N 1.33353 * 123.50824 * 342.41781 * 9 8 7 12 12 C 1.45753 * 124.10605 * 2.20052 * 11 9 8 13 13 N 1.30290 * 107.30531 * 180.26276 * 4 3 2 14 14 N 1.28530 * 110.05514 * 359.56660 * 13 4 3 15 15 C 1.31213 * 109.86051 * 0.44518 * 14 13 4 16 16 N 1.38579 * 126.47786 * 179.72950 * 15 14 13 17 17 C 1.46846 * 110.99657 * 63.06312 * 16 15 14 18 18 C 1.53039 * 109.52284 * 174.15949 * 17 16 15 19 19 C 1.53126 * 109.27435 * 59.18321 * 18 17 16 20 20 C 1.53112 * 109.16043 * 302.34075 * 19 18 17 21 21 H 1.08990 * 109.50784 * 297.71734 * 20 19 18 22 22 C 1.50704 * 109.53682 * 177.61536 * 20 19 18 23 23 H 1.07996 * 119.99998 * 240.18082 * 22 20 19 24 24 C 1.37875 * 119.99840 * 60.17766 * 22 20 19 25 25 N 1.31516 * 120.00044 * 0.02562 * 24 22 20 26 26 Si 1.86795 * 119.99921 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47212 * 90.00455 * 26 24 22 28 28 H 1.48507 * 109.47257 * 210.00107 * 26 24 22 29 29 H 1.48496 * 109.47421 * 330.00381 * 26 24 22 30 30 C 1.46842 * 110.99958 * 298.85755 * 16 15 14 31 31 H 1.08995 * 109.47727 * 300.00546 * 1 2 3 32 32 H 1.09005 * 109.46758 * 60.00586 * 1 2 3 33 33 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47715 * 239.99880 * 2 1 3 35 35 H 1.08997 * 109.47024 * 119.99499 * 2 1 3 36 36 H 1.08993 * 109.67496 * 52.97435 * 7 5 4 37 37 H 1.08999 * 109.67180 * 292.43769 * 7 5 4 38 38 H 1.09001 * 109.40009 * 169.02795 * 8 7 5 39 39 H 1.09004 * 109.40219 * 288.76324 * 8 7 5 40 40 H 0.97000 * 117.94325 * 182.22220 * 11 9 8 41 41 H 1.08997 * 109.30079 * 101.25638 * 12 11 9 42 42 H 1.08996 * 109.29894 * 220.84407 * 12 11 9 43 43 H 1.08997 * 109.46888 * 294.17749 * 17 16 15 44 44 H 1.08999 * 109.46435 * 54.15065 * 17 16 15 45 45 H 1.08996 * 109.50921 * 299.24381 * 18 17 16 46 46 H 1.09006 * 109.53482 * 179.13674 * 18 17 16 47 47 H 1.08997 * 109.51882 * 182.43703 * 19 18 17 48 48 H 1.08996 * 109.57657 * 62.28092 * 19 18 17 49 49 H 0.96991 * 120.00478 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.46583 * 305.84901 * 30 16 15 51 51 H 1.09001 * 109.46528 * 65.82205 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2603 2.1713 1.0895 5 6 2.0739 1.7829 2.5336 6 1 1.7164 0.7549 2.5950 7 6 1.0557 2.7218 3.1916 8 6 0.7497 2.1957 4.5961 9 6 2.0310 1.9017 5.3221 10 8 1.9942 1.7907 6.5293 11 7 3.2069 1.7558 4.7104 12 6 3.4056 1.9076 3.2745 13 7 2.6769 3.3240 0.6475 14 7 2.7231 3.3130 -0.6369 15 6 2.3260 2.1463 -1.0872 16 7 2.2361 1.7632 -2.4160 17 6 3.5576 1.7705 -3.0563 18 6 3.4422 1.2054 -4.4738 19 6 2.4591 2.0590 -5.2798 20 6 1.1045 2.0743 -4.5662 21 1 0.7052 1.0611 -4.5217 22 6 0.1470 2.9597 -5.3214 23 1 -0.2877 3.8216 -4.8372 24 6 -0.1739 2.6694 -6.6305 25 7 0.3552 1.6196 -7.2200 26 14 -1.3602 3.7673 -7.5668 27 1 -0.6017 4.8444 -8.2523 28 1 -2.0923 2.9589 -8.5748 29 1 -2.3295 4.3714 -6.6179 30 6 1.2878 2.6141 -3.1459 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 0.1404 2.7431 2.6002 37 1 1.4731 3.7264 3.2591 38 1 0.1844 2.9462 5.1487 39 1 0.1589 1.2828 4.5201 40 1 3.9783 1.5344 5.2553 41 1 3.8397 2.8867 3.0724 42 1 4.0853 1.1323 2.9210 43 1 3.9333 2.7926 -3.1023 44 1 4.2460 1.1565 -2.4756 45 1 3.0796 0.1785 -4.4279 46 1 4.4202 1.2249 -4.9548 47 1 2.3409 1.6347 -6.2768 48 1 2.8401 3.0771 -5.3601 49 1 0.1293 1.4151 -8.1408 50 1 0.3274 2.6130 -2.6303 51 1 1.6741 3.6324 -3.1915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647711735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:14 Heat of formation + Delta-G solvation = 35.054498 kcal Electronic energy + Delta-G solvation = -31666.178074 eV Core-core repulsion = 27601.144122 eV Total energy + Delta-G solvation = -4065.033952 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.99927 -40.54169 -38.40582 -37.07408 -35.71613 -34.04343 -33.50297 -32.03304 -31.09350 -30.42266 -30.03083 -27.99852 -25.10654 -25.07065 -24.32218 -23.82312 -23.46963 -21.68325 -21.21190 -20.58272 -19.33672 -18.56735 -17.79565 -17.24039 -16.68319 -16.50257 -16.04311 -15.70447 -15.66690 -14.94744 -14.65076 -14.52277 -14.36032 -14.16403 -14.08627 -13.73194 -13.61416 -13.24880 -12.90811 -12.65846 -12.57318 -12.48490 -12.26077 -12.15491 -11.92903 -11.74951 -11.59511 -11.38130 -11.32594 -11.00220 -10.87689 -10.78461 -10.46483 -10.25084 -10.13862 -10.09725 -9.98942 -9.64623 -9.47425 -9.32659 -8.96496 -8.76478 -8.44407 -8.25288 -6.06321 -4.12511 1.71076 2.22634 2.29955 2.82744 2.95704 3.27025 3.34055 3.37314 3.85882 4.01509 4.10285 4.20365 4.31648 4.40480 4.45058 4.58124 4.79298 4.80024 4.92296 4.98704 5.04936 5.23505 5.26216 5.30085 5.37531 5.41380 5.43053 5.47886 5.53419 5.64939 5.72856 5.82555 5.89590 5.95566 6.01004 6.14565 6.30237 6.32042 6.36970 6.50766 6.60140 6.64788 6.79596 6.92669 6.98913 7.24176 7.33466 7.64406 7.68261 7.84121 7.92885 8.04448 8.35425 8.81330 8.90560 9.52493 10.99845 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.002434 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.552379 B =11502.733675 C =11955.660176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.462 5.462 4 C 0.164 3.836 5 C -0.006 4.006 6 H 0.095 0.905 7 C -0.113 4.113 8 C -0.134 4.134 9 C 0.520 3.480 10 O -0.559 6.559 11 N -0.717 5.717 12 C 0.120 3.880 13 N -0.278 5.278 14 N -0.314 5.314 15 C 0.372 3.628 16 N -0.470 5.470 17 C 0.075 3.925 18 C -0.116 4.116 19 C -0.114 4.114 20 C 0.059 3.941 21 H 0.035 0.965 22 C -0.515 4.515 23 H 0.055 0.945 24 C 0.065 3.935 25 N -0.888 5.888 26 Si 0.891 3.109 27 H -0.280 1.280 28 H -0.286 1.286 29 H -0.274 1.274 30 C 0.081 3.919 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.402 0.598 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.094 0.906 48 H 0.036 0.964 49 H 0.261 0.739 50 H 0.058 0.942 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -5.805 18.130 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.016 4.016 3 N -0.155 5.155 4 C -0.104 4.104 5 C -0.027 4.027 6 H 0.113 0.887 7 C -0.151 4.151 8 C -0.174 4.174 9 C 0.307 3.693 10 O -0.438 6.438 11 N -0.370 5.370 12 C -0.005 4.005 13 N -0.119 5.119 14 N -0.157 5.157 15 C 0.016 3.984 16 N -0.196 5.196 17 C -0.052 4.052 18 C -0.154 4.154 19 C -0.152 4.152 20 C 0.040 3.960 21 H 0.053 0.947 22 C -0.554 4.554 23 H 0.073 0.927 24 C -0.136 4.136 25 N -0.526 5.526 26 Si 0.719 3.281 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.199 1.199 30 C -0.044 4.044 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.238 0.762 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.113 0.887 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.077 0.923 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.594 -4.983 18.391 19.600 hybrid contribution -0.515 -0.188 -0.620 0.828 sum 4.079 -5.171 17.770 18.952 Atomic orbital electron populations 1.22137 0.93562 1.03453 1.03468 1.21855 0.96145 0.78819 1.04743 1.46462 1.49244 1.13802 1.06004 1.24025 1.06193 0.89715 0.90465 1.19670 0.96703 1.01003 0.85337 0.88716 1.21702 0.99373 0.99760 0.94300 1.21675 0.95179 1.04393 0.96139 1.20230 0.85668 0.75637 0.87780 1.90773 1.86671 1.51571 1.14799 1.45433 1.10945 1.71786 1.08791 1.21377 0.96253 1.03741 0.79168 1.73946 1.17171 1.17037 1.03722 1.74727 1.20853 1.17377 1.02775 1.22751 0.99222 0.87074 0.89334 1.58996 1.11988 1.53998 0.94663 1.22093 0.86807 1.00280 0.95980 1.21711 0.99932 1.00715 0.93029 1.21704 0.94616 0.97208 1.01664 1.18691 0.93306 0.97160 0.86879 0.94684 1.21072 1.25955 1.11294 0.97101 0.92684 1.24904 0.96084 0.95151 0.97510 1.69872 1.43592 1.26406 1.12773 0.86604 0.81195 0.80550 0.79720 1.20642 1.21227 1.19937 1.22452 0.91975 0.93584 0.96411 0.92330 0.90817 0.90260 0.87573 0.89447 0.89944 0.89476 0.87454 0.87976 0.76210 0.89698 0.90204 0.93578 0.92421 0.91945 0.92625 0.88721 0.94560 0.92950 0.92326 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 2 C 0.11 0.98 6.58 -4.04 -0.03 0.96 16 3 N -0.46 -5.86 2.81 -114.09 -0.32 -6.18 16 4 C 0.16 1.95 6.58 -154.01 -1.01 0.94 16 5 C -0.01 -0.04 2.62 -91.64 -0.24 -0.28 16 6 H 0.09 0.56 6.99 -51.92 -0.36 0.20 16 7 C -0.11 -0.84 5.31 -26.52 -0.14 -0.98 16 8 C -0.13 -0.91 6.03 -28.10 -0.17 -1.08 16 9 C 0.52 4.85 7.71 -11.87 -0.09 4.76 16 10 O -0.56 -7.54 17.78 5.55 0.10 -7.44 16 11 N -0.72 -5.21 5.45 -61.40 -0.33 -5.54 16 12 C 0.12 0.83 6.46 -4.49 -0.03 0.80 16 13 N -0.28 -4.33 12.13 32.99 0.40 -3.93 16 14 N -0.31 -5.68 12.19 30.31 0.37 -5.31 16 15 C 0.37 6.13 6.41 -318.87 -2.05 4.09 16 16 N -0.47 -8.24 4.67 -174.55 -0.82 -9.06 16 17 C 0.08 1.27 5.39 -3.83 -0.02 1.25 16 18 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 19 C -0.11 -2.51 5.03 -26.61 -0.13 -2.65 16 20 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 21 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 22 C -0.52 -13.53 8.56 -34.44 -0.29 -13.82 16 23 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 24 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 25 N -0.89 -24.14 11.37 55.43 0.63 -23.51 16 26 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 30 C 0.08 1.68 4.60 -3.83 -0.02 1.66 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 0.53 7.31 -51.93 -0.38 0.15 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.74 8.13 -51.93 -0.42 0.32 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.40 2.53 8.80 -40.82 -0.36 2.17 16 41 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 50 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 51 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -31.91 404.13 -11.77 -43.68 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.56 Total: 0.45 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -4.31 Total: -4.90 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.07 Total: -53.53 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.10 Total: -7.44 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.91 -11.77 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647711735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.739 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds