Wall clock time and date at job start Wed Apr 1 2020 04:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47204 * 2 1 4 4 C 1.36745 * 127.13848 * 88.14552 * 3 2 1 5 5 C 1.50699 * 126.34751 * 0.02562 * 4 3 2 6 6 H 1.09007 * 109.73299 * 0.40353 * 5 4 3 7 7 C 1.53343 * 109.60201 * 239.99903 * 5 4 3 8 8 C 1.53068 * 108.42263 * 172.71353 * 7 5 4 9 9 C 1.50177 * 109.89445 * 48.89639 * 8 7 5 10 10 O 1.21283 * 118.24285 * 162.43865 * 9 8 7 11 11 N 1.33353 * 123.50824 * 342.41781 * 9 8 7 12 12 C 1.45753 * 124.10605 * 2.20052 * 11 9 8 13 13 N 1.30290 * 107.30531 * 180.26276 * 4 3 2 14 14 N 1.28530 * 110.05514 * 359.56660 * 13 4 3 15 15 C 1.31213 * 109.86051 * 0.44518 * 14 13 4 16 16 N 1.38579 * 126.47786 * 179.72950 * 15 14 13 17 17 C 1.46846 * 110.99657 * 63.06312 * 16 15 14 18 18 C 1.53039 * 109.52284 * 174.15949 * 17 16 15 19 19 C 1.53126 * 109.27435 * 59.18321 * 18 17 16 20 20 C 1.53112 * 109.16043 * 302.34075 * 19 18 17 21 21 H 1.08990 * 109.50784 * 297.71734 * 20 19 18 22 22 C 1.50704 * 109.53682 * 177.61536 * 20 19 18 23 23 H 1.07996 * 119.99998 * 240.18082 * 22 20 19 24 24 C 1.37875 * 119.99840 * 60.17766 * 22 20 19 25 25 N 1.31516 * 120.00044 * 0.02562 * 24 22 20 26 26 Si 1.86795 * 119.99921 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47212 * 90.00455 * 26 24 22 28 28 H 1.48507 * 109.47257 * 210.00107 * 26 24 22 29 29 H 1.48496 * 109.47421 * 330.00381 * 26 24 22 30 30 C 1.46842 * 110.99958 * 298.85755 * 16 15 14 31 31 H 1.08995 * 109.47727 * 300.00546 * 1 2 3 32 32 H 1.09005 * 109.46758 * 60.00586 * 1 2 3 33 33 H 1.09002 * 109.47126 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47715 * 239.99880 * 2 1 3 35 35 H 1.08997 * 109.47024 * 119.99499 * 2 1 3 36 36 H 1.08993 * 109.67496 * 52.97435 * 7 5 4 37 37 H 1.08999 * 109.67180 * 292.43769 * 7 5 4 38 38 H 1.09001 * 109.40009 * 169.02795 * 8 7 5 39 39 H 1.09004 * 109.40219 * 288.76324 * 8 7 5 40 40 H 0.97000 * 117.94325 * 182.22220 * 11 9 8 41 41 H 1.08997 * 109.30079 * 101.25638 * 12 11 9 42 42 H 1.08996 * 109.29894 * 220.84407 * 12 11 9 43 43 H 1.08997 * 109.46888 * 294.17749 * 17 16 15 44 44 H 1.08999 * 109.46435 * 54.15065 * 17 16 15 45 45 H 1.08996 * 109.50921 * 299.24381 * 18 17 16 46 46 H 1.09006 * 109.53482 * 179.13674 * 18 17 16 47 47 H 1.08997 * 109.51882 * 182.43703 * 19 18 17 48 48 H 1.08996 * 109.57657 * 62.28092 * 19 18 17 49 49 H 0.96991 * 120.00478 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.46583 * 305.84901 * 30 16 15 51 51 H 1.09001 * 109.46528 * 65.82205 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2603 2.1713 1.0895 5 6 2.0739 1.7829 2.5336 6 1 1.7164 0.7549 2.5950 7 6 1.0557 2.7218 3.1916 8 6 0.7497 2.1957 4.5961 9 6 2.0310 1.9017 5.3221 10 8 1.9942 1.7907 6.5293 11 7 3.2069 1.7558 4.7104 12 6 3.4056 1.9076 3.2745 13 7 2.6769 3.3240 0.6475 14 7 2.7231 3.3130 -0.6369 15 6 2.3260 2.1463 -1.0872 16 7 2.2361 1.7632 -2.4160 17 6 3.5576 1.7705 -3.0563 18 6 3.4422 1.2054 -4.4738 19 6 2.4591 2.0590 -5.2798 20 6 1.1045 2.0743 -4.5662 21 1 0.7052 1.0611 -4.5217 22 6 0.1470 2.9597 -5.3214 23 1 -0.2877 3.8216 -4.8372 24 6 -0.1739 2.6694 -6.6305 25 7 0.3552 1.6196 -7.2200 26 14 -1.3602 3.7673 -7.5668 27 1 -0.6017 4.8444 -8.2523 28 1 -2.0923 2.9589 -8.5748 29 1 -2.3295 4.3714 -6.6179 30 6 1.2878 2.6141 -3.1459 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 0.1404 2.7431 2.6002 37 1 1.4731 3.7264 3.2591 38 1 0.1844 2.9462 5.1487 39 1 0.1589 1.2828 4.5201 40 1 3.9783 1.5344 5.2553 41 1 3.8397 2.8867 3.0724 42 1 4.0853 1.1323 2.9210 43 1 3.9333 2.7926 -3.1023 44 1 4.2460 1.1565 -2.4756 45 1 3.0796 0.1785 -4.4279 46 1 4.4202 1.2249 -4.9548 47 1 2.3409 1.6347 -6.2768 48 1 2.8401 3.0771 -5.3601 49 1 0.1293 1.4151 -8.1408 50 1 0.3274 2.6130 -2.6303 51 1 1.6741 3.6324 -3.1915 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647711735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:13 Heat of formation + Delta-G solvation = 15.994669 kcal Electronic energy + Delta-G solvation = -31667.004570 eV Core-core repulsion = 27601.144122 eV Total energy + Delta-G solvation = -4065.860448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.10806 -41.25137 -39.91595 -37.87372 -36.65975 -35.69849 -34.30942 -33.55736 -31.97010 -31.83362 -31.28541 -29.07234 -27.00262 -25.79639 -25.47445 -24.86330 -24.32383 -23.30535 -22.29176 -21.63301 -20.48338 -19.79931 -18.79942 -18.42445 -17.89610 -17.42453 -17.17570 -16.88001 -16.62296 -16.45257 -15.77329 -15.59340 -15.29977 -15.10088 -15.01361 -14.90516 -14.53924 -14.46589 -14.34162 -14.23270 -13.97864 -13.49956 -13.29233 -12.94089 -12.87848 -12.86680 -12.72971 -12.60884 -12.46679 -12.41554 -12.25840 -11.99183 -11.92974 -11.81809 -11.62883 -11.39527 -11.12116 -11.07599 -10.85799 -10.77024 -10.41132 -10.14057 -10.03757 -9.76365 -8.10132 -6.23044 0.63401 1.21095 1.41001 1.43035 1.51954 1.59570 1.71962 2.27513 2.42059 2.76152 3.10461 3.17822 3.44161 3.58289 3.70234 3.73824 3.87784 3.98015 4.07619 4.11793 4.17724 4.22187 4.34423 4.36641 4.41929 4.43834 4.52592 4.58049 4.60194 4.67675 4.78587 4.82246 4.84143 4.85925 4.88656 4.95728 5.00435 5.08769 5.14004 5.18971 5.25740 5.30024 5.45407 5.61289 5.65133 5.75748 5.78742 5.99493 6.12352 6.27647 6.33465 6.37802 6.85998 7.17526 7.44526 7.67219 8.94548 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.002434 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.552379 B =11502.733675 C =11955.660176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 N -0.455 5.455 4 C 0.193 3.807 5 C -0.004 4.004 6 H 0.127 0.873 7 C -0.108 4.108 8 C -0.124 4.124 9 C 0.517 3.483 10 O -0.606 6.606 11 N -0.706 5.706 12 C 0.125 3.875 13 N -0.311 5.311 14 N -0.350 5.350 15 C 0.351 3.649 16 N -0.462 5.462 17 C 0.080 3.920 18 C -0.104 4.104 19 C -0.108 4.108 20 C 0.062 3.938 21 H 0.010 0.990 22 C -0.538 4.538 23 H 0.045 0.955 24 C 0.022 3.978 25 N -0.909 5.909 26 Si 0.949 3.051 27 H -0.277 1.277 28 H -0.280 1.280 29 H -0.272 1.272 30 C 0.103 3.897 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.132 0.868 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.408 0.592 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.032 0.968 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.048 0.952 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.648 -7.419 19.764 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.147 5.147 4 C -0.076 4.076 5 C -0.026 4.026 6 H 0.145 0.855 7 C -0.146 4.146 8 C -0.164 4.164 9 C 0.305 3.695 10 O -0.488 6.488 11 N -0.357 5.357 12 C 0.000 4.000 13 N -0.152 5.152 14 N -0.193 5.193 15 C -0.007 4.007 16 N -0.188 5.188 17 C -0.047 4.047 18 C -0.142 4.142 19 C -0.146 4.146 20 C 0.043 3.957 21 H 0.029 0.971 22 C -0.576 4.576 23 H 0.064 0.936 24 C -0.177 4.177 25 N -0.548 5.548 26 Si 0.775 3.225 27 H -0.203 1.203 28 H -0.206 1.206 29 H -0.197 1.197 30 C -0.024 4.024 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.150 0.850 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.144 0.856 40 H 0.244 0.756 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.051 0.949 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.041 0.959 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.757 -6.611 20.015 21.609 hybrid contribution -0.557 0.306 -1.062 1.237 sum 4.200 -6.306 18.954 20.412 Atomic orbital electron populations 1.22120 0.93313 1.04652 1.02122 1.22238 0.96317 0.76973 1.06652 1.46648 1.48346 1.14839 1.04869 1.24728 1.02797 0.88298 0.91754 1.19926 0.97423 1.02736 0.82467 0.85473 1.21630 0.99241 0.99013 0.94740 1.21647 0.94170 1.05576 0.95002 1.20653 0.86698 0.74828 0.87278 1.90761 1.87368 1.53922 1.16774 1.45369 1.10778 1.70572 1.08969 1.21347 0.96021 1.03984 0.78659 1.73884 1.19376 1.19121 1.02780 1.74623 1.21862 1.18625 1.04239 1.22551 1.01042 0.87800 0.89276 1.58867 1.11749 1.52777 0.95394 1.22074 0.86921 0.99971 0.95706 1.21588 0.99800 0.99708 0.93116 1.21514 0.95138 0.97070 1.00861 1.18554 0.93468 0.95218 0.88503 0.97135 1.21396 1.26860 1.11542 0.97851 0.93645 1.25580 0.97528 0.96365 0.98257 1.69983 1.44376 1.27443 1.12983 0.85700 0.79337 0.78988 0.78488 1.20329 1.20570 1.19701 1.21976 0.92424 0.92755 0.95262 0.91070 0.94705 0.87804 0.88253 0.84992 0.89704 0.90932 0.87092 0.85630 0.75569 0.90936 0.87984 0.94929 0.89552 0.91645 0.90158 0.91473 0.95940 0.92859 0.93313 0.96115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 71.98 0.74 -1.74 16 2 C 0.10 1.49 6.58 86.38 0.57 2.06 16 3 N -0.46 -10.55 2.81 -514.86 -1.45 -12.00 16 4 C 0.19 4.15 6.58 137.64 0.91 5.06 16 5 C 0.00 -0.05 2.62 -11.46 -0.03 -0.08 16 6 H 0.13 0.79 6.99 -2.38 -0.02 0.77 16 7 C -0.11 -1.32 5.31 30.73 0.16 -1.16 16 8 C -0.12 -1.34 6.03 29.71 0.18 -1.16 16 9 C 0.52 8.49 7.71 87.71 0.68 9.16 16 10 O -0.61 -15.56 17.78 -3.04 -0.05 -15.61 16 11 N -0.71 -8.40 5.45 -467.35 -2.55 -10.94 16 12 C 0.12 1.33 6.46 86.49 0.56 1.89 16 13 N -0.31 -9.47 12.13 -49.54 -0.60 -10.08 16 14 N -0.35 -12.69 12.19 -58.00 -0.71 -13.40 16 15 C 0.35 11.37 6.41 260.11 1.67 13.04 16 16 N -0.46 -16.25 4.67 -706.16 -3.30 -19.54 16 17 C 0.08 2.64 5.39 86.33 0.47 3.10 16 18 C -0.10 -3.63 6.09 30.65 0.19 -3.45 16 19 C -0.11 -4.89 5.03 30.67 0.15 -4.74 16 20 C 0.06 2.99 2.26 -11.49 -0.03 2.97 16 21 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 22 C -0.54 -29.25 8.56 25.60 0.22 -29.03 16 23 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 24 C 0.02 1.21 5.30 84.65 0.45 1.66 16 25 N -0.91 -50.48 11.37 21.45 0.24 -50.24 16 26 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 27 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 28 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 29 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 30 C 0.10 4.40 4.60 86.33 0.40 4.79 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.13 0.86 7.31 -2.39 -0.02 0.84 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.41 4.20 8.80 -92.71 -0.82 3.38 16 41 H 0.07 1.03 8.06 -2.39 -0.02 1.01 16 42 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 47 H 0.07 3.43 6.17 -2.39 -0.01 3.41 16 48 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 50 H 0.05 2.14 8.10 -2.39 -0.02 2.12 16 51 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.26 404.13 1.00 -72.25 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 0.11 Total: 12.19 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 7.27 Total: 2.38 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -8.35 Total: -116.20 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.05 Total: -15.61 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -73.26 1.00 -72.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647711735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.247 kcal (2) G-P(sol) polarization free energy of solvation -73.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds