Wall clock time and date at job start Wed Apr 1 2020 04:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46968 * 2 1 4 4 C 1.36734 * 127.13643 * 83.91527 * 3 2 1 5 5 C 1.50709 * 126.34826 * 0.02562 * 4 3 2 6 6 H 1.09000 * 109.73011 * 359.30587 * 5 4 3 7 7 C 1.53345 * 109.59968 * 119.70996 * 5 4 3 8 8 C 1.53072 * 108.42251 * 187.28990 * 7 5 4 9 9 C 1.50174 * 109.89147 * 311.10281 * 8 7 5 10 10 O 1.21277 * 118.24760 * 197.58194 * 9 8 7 11 11 N 1.33356 * 123.51021 * 17.86079 * 9 8 7 12 12 C 1.45779 * 124.08789 * 357.20700 * 11 9 8 13 13 N 1.30296 * 107.31120 * 179.75756 * 4 3 2 14 14 N 1.28530 * 110.04531 * 0.24108 * 13 4 3 15 15 C 1.31219 * 109.86738 * 0.02562 * 14 13 4 16 16 N 1.38574 * 126.47488 * 180.02562 * 15 14 13 17 17 C 1.46843 * 110.99832 * 234.16203 * 16 15 14 18 18 C 1.53040 * 109.52294 * 174.16506 * 17 16 15 19 19 C 1.53119 * 109.28303 * 59.17864 * 18 17 16 20 20 C 1.53123 * 109.15525 * 302.34764 * 19 18 17 21 21 H 1.08993 * 109.50460 * 297.67226 * 20 19 18 22 22 C 1.50701 * 109.49942 * 177.59170 * 20 19 18 23 23 H 1.07997 * 120.00542 * 239.99988 * 22 20 19 24 24 C 1.37882 * 119.99868 * 59.99978 * 22 20 19 25 25 N 1.31508 * 120.00083 * 359.97438 * 24 22 20 26 26 Si 1.86798 * 119.99983 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47171 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47038 * 120.00208 * 26 24 22 29 29 H 1.48502 * 109.47185 * 240.00142 * 26 24 22 30 30 C 1.46851 * 110.99767 * 109.95495 * 16 15 14 31 31 H 1.08998 * 109.47185 * 294.38306 * 1 2 3 32 32 H 1.08998 * 109.47292 * 54.38610 * 1 2 3 33 33 H 1.09001 * 109.47251 * 174.38872 * 1 2 3 34 34 H 1.09002 * 109.46718 * 240.00202 * 2 1 3 35 35 H 1.08995 * 109.47130 * 120.00204 * 2 1 3 36 36 H 1.09004 * 109.67406 * 67.56194 * 7 5 4 37 37 H 1.08993 * 109.70564 * 307.03875 * 7 5 4 38 38 H 1.08995 * 109.40028 * 190.97429 * 8 7 5 39 39 H 1.09003 * 109.40235 * 71.22695 * 8 7 5 40 40 H 0.96994 * 117.94793 * 177.47588 * 11 9 8 41 41 H 1.08994 * 109.50955 * 259.16880 * 12 11 9 42 42 H 1.08998 * 108.98815 * 139.65172 * 12 11 9 43 43 H 1.08999 * 109.46662 * 294.17770 * 17 16 15 44 44 H 1.08998 * 109.46650 * 54.15479 * 17 16 15 45 45 H 1.09002 * 109.50284 * 179.12159 * 18 17 16 46 46 H 1.09005 * 109.50078 * 299.19699 * 18 17 16 47 47 H 1.08999 * 109.51915 * 62.24689 * 19 18 17 48 48 H 1.08990 * 109.52270 * 182.37643 * 19 18 17 49 49 H 0.97004 * 120.00327 * 179.97438 * 25 24 22 50 50 H 1.08997 * 109.46235 * 305.85278 * 30 16 15 51 51 H 1.09000 * 109.46249 * 65.82172 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1845 2.1980 1.0839 5 6 1.8978 1.8449 2.5207 6 1 1.5177 0.8251 2.5803 7 6 3.1847 1.9634 3.3462 8 6 2.9084 1.4264 4.7527 9 6 1.6477 2.0369 5.2942 10 8 1.4513 1.9829 6.4898 11 7 0.7300 2.6306 4.5302 12 6 0.8602 2.8133 3.0897 13 7 2.6421 3.3363 0.6451 14 7 2.7706 3.2961 -0.6332 15 6 2.3982 2.1207 -1.0821 16 7 2.3976 1.7063 -2.4044 17 6 1.0743 1.2062 -2.7985 18 6 1.0706 0.8950 -4.2969 19 6 2.1439 -0.1547 -4.5980 20 6 3.5051 0.3711 -4.1339 21 1 3.7570 1.2722 -4.6929 22 6 4.5584 -0.6799 -4.3726 23 1 5.1262 -1.0737 -3.5426 24 6 4.7972 -1.1389 -5.6507 25 7 4.1054 -0.6598 -6.6613 26 14 6.1032 -2.4412 -5.9467 27 1 6.7341 -2.8122 -4.6545 28 1 5.4757 -3.6425 -6.5536 29 1 7.1377 -1.9046 -6.8671 30 6 3.4383 0.6974 -2.6402 31 1 -0.3633 0.4242 0.9360 32 1 -0.3634 0.5984 -0.8354 33 1 -0.3634 -1.0227 -0.1005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.4877 3.0088 3.4055 37 1 3.9763 1.3779 2.8788 38 1 3.7429 1.6786 5.4069 39 1 2.7971 0.3429 4.7112 40 1 -0.0724 2.9650 4.9604 41 1 1.1691 3.8371 2.8791 42 1 -0.1049 2.6243 2.6197 43 1 0.8473 0.2989 -2.2386 44 1 0.3208 1.9638 -2.5831 45 1 0.0930 0.5091 -4.5860 46 1 1.2832 1.8050 -4.8581 47 1 1.9098 -1.0776 -4.0673 48 1 2.1734 -0.3484 -5.6701 49 1 4.2736 -0.9824 -7.5605 50 1 4.4017 1.0854 -2.3097 51 1 3.2003 -0.2075 -2.0810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647711736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:18 Heat of formation + Delta-G solvation = 40.922500 kcal Electronic energy + Delta-G solvation = -31999.917266 eV Core-core repulsion = 27935.137770 eV Total energy + Delta-G solvation = -4064.779496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.05786 -40.54333 -38.71040 -37.10768 -35.72435 -34.05727 -33.48799 -32.12983 -31.20617 -30.45067 -30.16291 -28.16686 -25.21641 -25.11151 -24.55182 -23.58525 -23.50659 -21.80925 -21.32388 -20.66850 -19.26607 -18.99419 -17.84378 -17.24425 -16.68337 -16.55525 -16.00651 -15.88808 -15.59317 -15.07058 -14.74809 -14.56587 -14.46140 -14.40259 -14.08649 -13.80321 -13.66454 -13.28435 -13.04176 -12.74365 -12.71269 -12.56584 -12.25777 -12.18698 -11.98787 -11.78152 -11.72588 -11.47394 -11.31250 -11.08373 -10.93494 -10.83651 -10.37244 -10.34532 -10.18201 -10.11234 -10.05723 -9.75441 -9.47603 -9.42343 -8.99424 -8.84586 -8.50207 -8.33390 -6.11983 -4.19231 1.69899 2.28437 2.30254 2.84796 2.96903 3.21221 3.30310 3.32525 3.67346 3.88591 4.09340 4.20475 4.27786 4.33749 4.34255 4.58031 4.59251 4.77587 4.84512 4.91528 4.98220 5.09256 5.15269 5.18434 5.25445 5.32571 5.36707 5.38638 5.46670 5.56521 5.59696 5.71383 5.75163 5.83126 5.91692 5.98991 6.10553 6.19132 6.37020 6.39938 6.44374 6.53665 6.70618 6.87283 6.92450 7.12555 7.23626 7.52989 7.60255 7.84223 7.86545 7.97188 8.26515 8.83725 8.89150 9.46213 10.94134 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.002588 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.214442 B =10816.793925 C =11387.745580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 N -0.494 5.494 4 C 0.166 3.834 5 C -0.007 4.007 6 H 0.093 0.907 7 C -0.114 4.114 8 C -0.134 4.134 9 C 0.520 3.480 10 O -0.559 6.559 11 N -0.718 5.718 12 C 0.121 3.879 13 N -0.279 5.279 14 N -0.273 5.273 15 C 0.370 3.630 16 N -0.444 5.444 17 C 0.056 3.944 18 C -0.118 4.118 19 C -0.113 4.113 20 C 0.057 3.943 21 H 0.041 0.959 22 C -0.518 4.518 23 H 0.055 0.945 24 C 0.066 3.934 25 N -0.885 5.885 26 Si 0.892 3.108 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.283 1.283 30 C 0.070 3.930 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.402 0.598 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.032 0.968 48 H 0.097 0.903 49 H 0.261 0.739 50 H 0.069 0.931 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.705 0.824 16.443 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.034 4.034 3 N -0.191 5.191 4 C -0.102 4.102 5 C -0.029 4.029 6 H 0.111 0.889 7 C -0.152 4.152 8 C -0.174 4.174 9 C 0.307 3.693 10 O -0.438 6.438 11 N -0.370 5.370 12 C -0.004 4.004 13 N -0.120 5.120 14 N -0.114 5.114 15 C 0.015 3.985 16 N -0.168 5.168 17 C -0.071 4.071 18 C -0.156 4.156 19 C -0.151 4.151 20 C 0.038 3.962 21 H 0.060 0.940 22 C -0.557 4.557 23 H 0.073 0.927 24 C -0.136 4.136 25 N -0.523 5.523 26 Si 0.720 3.280 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.209 1.209 30 C -0.055 4.055 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.238 0.762 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.051 0.949 48 H 0.116 0.884 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.984 2.506 16.400 18.867 hybrid contribution -0.300 -2.647 0.107 2.666 sum -9.284 -0.141 16.507 18.939 Atomic orbital electron populations 1.22290 0.93609 1.03901 1.03315 1.22149 0.96103 0.79633 1.05486 1.47666 1.49905 1.13530 1.08039 1.23983 1.05725 0.89838 0.90684 1.19684 0.97137 1.00189 0.85866 0.88870 1.21710 0.96345 1.04008 0.93139 1.21675 0.96051 1.02157 0.97521 1.20229 0.85160 0.77546 0.86374 1.90771 1.78265 1.59184 1.15586 1.45447 1.22763 1.60217 1.08561 1.21380 0.99214 1.00270 0.79572 1.74100 1.16291 1.18046 1.03580 1.74568 1.19749 1.14970 1.02107 1.23606 0.99575 0.89463 0.85845 1.59321 1.07301 1.42372 1.07815 1.22460 0.87958 0.97704 0.98954 1.21723 0.99825 1.01484 0.92551 1.21717 0.93981 0.94658 1.04740 1.18709 0.93407 0.97113 0.87000 0.94046 1.21061 1.19298 1.22165 0.93160 0.92715 1.24911 0.96077 0.96563 0.96072 1.69876 1.40227 1.42843 0.99383 0.86544 0.81726 0.81471 0.78297 1.19844 1.21019 1.20879 1.22609 0.91553 0.89239 1.02107 0.91900 0.91056 0.89967 0.87700 0.88799 0.89422 0.89942 0.87440 0.88014 0.76222 0.89630 0.90299 0.94093 0.91639 0.92562 0.91325 0.94916 0.88446 0.92874 0.91231 0.95404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.61 37.16 0.36 -0.95 16 2 C 0.09 0.85 5.50 -4.04 -0.02 0.83 16 3 N -0.49 -6.27 2.80 -114.08 -0.32 -6.59 16 4 C 0.17 1.99 6.58 -154.01 -1.01 0.98 16 5 C -0.01 -0.06 2.63 -91.63 -0.24 -0.30 16 6 H 0.09 0.59 7.11 -51.93 -0.37 0.22 16 7 C -0.11 -0.86 5.31 -26.52 -0.14 -1.00 16 8 C -0.13 -0.94 6.03 -28.10 -0.17 -1.11 16 9 C 0.52 4.92 7.71 -11.87 -0.09 4.83 16 10 O -0.56 -7.60 17.78 5.56 0.10 -7.50 16 11 N -0.72 -5.28 5.45 -61.38 -0.33 -5.62 16 12 C 0.12 0.85 6.46 -4.48 -0.03 0.82 16 13 N -0.28 -4.36 12.12 32.99 0.40 -3.96 16 14 N -0.27 -5.01 12.23 30.31 0.37 -4.64 16 15 C 0.37 6.15 6.66 -318.88 -2.12 4.03 16 16 N -0.44 -7.88 4.69 -174.55 -0.82 -8.70 16 17 C 0.06 0.86 4.21 -3.83 -0.02 0.84 16 18 C -0.12 -2.00 6.09 -26.65 -0.16 -2.17 16 19 C -0.11 -2.36 5.02 -26.61 -0.13 -2.49 16 20 C 0.06 1.30 2.27 -91.69 -0.21 1.09 16 21 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 22 C -0.52 -13.18 8.56 -34.44 -0.29 -13.47 16 23 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 24 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 25 N -0.89 -23.77 11.35 55.43 0.63 -23.14 16 26 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 C 0.07 1.37 4.45 -3.83 -0.02 1.36 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.64 6.22 -51.93 -0.32 0.32 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.18 4.62 -51.93 -0.24 0.94 16 35 H 0.09 0.67 7.53 -51.93 -0.39 0.28 16 36 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.40 2.57 8.80 -40.82 -0.36 2.21 16 41 H 0.09 0.69 8.06 -51.93 -0.42 0.28 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.55 4.14 -51.93 -0.21 0.34 16 44 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.10 2.33 6.15 -51.93 -0.32 2.02 16 49 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 50 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 51 H 0.03 0.51 5.96 -51.93 -0.31 0.20 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -31.60 390.04 -11.49 -43.09 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.97 Total: 1.15 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -4.40 Total: -5.10 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.07 Total: -52.65 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.10 Total: -7.50 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.60 -11.49 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647711736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.017 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds