Wall clock time and date at job start Wed Apr 1 2020 04:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46968 * 2 1 4 4 C 1.36734 * 127.13643 * 83.91527 * 3 2 1 5 5 C 1.50709 * 126.34826 * 0.02562 * 4 3 2 6 6 H 1.09000 * 109.73011 * 359.30587 * 5 4 3 7 7 C 1.53345 * 109.59968 * 119.70996 * 5 4 3 8 8 C 1.53072 * 108.42251 * 187.28990 * 7 5 4 9 9 C 1.50174 * 109.89147 * 311.10281 * 8 7 5 10 10 O 1.21277 * 118.24760 * 197.58194 * 9 8 7 11 11 N 1.33356 * 123.51021 * 17.86079 * 9 8 7 12 12 C 1.45779 * 124.08789 * 357.20700 * 11 9 8 13 13 N 1.30296 * 107.31120 * 179.75756 * 4 3 2 14 14 N 1.28530 * 110.04531 * 0.24108 * 13 4 3 15 15 C 1.31219 * 109.86738 * 0.02562 * 14 13 4 16 16 N 1.38574 * 126.47488 * 180.02562 * 15 14 13 17 17 C 1.46843 * 110.99832 * 234.16203 * 16 15 14 18 18 C 1.53040 * 109.52294 * 174.16506 * 17 16 15 19 19 C 1.53119 * 109.28303 * 59.17864 * 18 17 16 20 20 C 1.53123 * 109.15525 * 302.34764 * 19 18 17 21 21 H 1.08993 * 109.50460 * 297.67226 * 20 19 18 22 22 C 1.50701 * 109.49942 * 177.59170 * 20 19 18 23 23 H 1.07997 * 120.00542 * 239.99988 * 22 20 19 24 24 C 1.37882 * 119.99868 * 59.99978 * 22 20 19 25 25 N 1.31508 * 120.00083 * 359.97438 * 24 22 20 26 26 Si 1.86798 * 119.99983 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47171 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47038 * 120.00208 * 26 24 22 29 29 H 1.48502 * 109.47185 * 240.00142 * 26 24 22 30 30 C 1.46851 * 110.99767 * 109.95495 * 16 15 14 31 31 H 1.08998 * 109.47185 * 294.38306 * 1 2 3 32 32 H 1.08998 * 109.47292 * 54.38610 * 1 2 3 33 33 H 1.09001 * 109.47251 * 174.38872 * 1 2 3 34 34 H 1.09002 * 109.46718 * 240.00202 * 2 1 3 35 35 H 1.08995 * 109.47130 * 120.00204 * 2 1 3 36 36 H 1.09004 * 109.67406 * 67.56194 * 7 5 4 37 37 H 1.08993 * 109.70564 * 307.03875 * 7 5 4 38 38 H 1.08995 * 109.40028 * 190.97429 * 8 7 5 39 39 H 1.09003 * 109.40235 * 71.22695 * 8 7 5 40 40 H 0.96994 * 117.94793 * 177.47588 * 11 9 8 41 41 H 1.08994 * 109.50955 * 259.16880 * 12 11 9 42 42 H 1.08998 * 108.98815 * 139.65172 * 12 11 9 43 43 H 1.08999 * 109.46662 * 294.17770 * 17 16 15 44 44 H 1.08998 * 109.46650 * 54.15479 * 17 16 15 45 45 H 1.09002 * 109.50284 * 179.12159 * 18 17 16 46 46 H 1.09005 * 109.50078 * 299.19699 * 18 17 16 47 47 H 1.08999 * 109.51915 * 62.24689 * 19 18 17 48 48 H 1.08990 * 109.52270 * 182.37643 * 19 18 17 49 49 H 0.97004 * 120.00327 * 179.97438 * 25 24 22 50 50 H 1.08997 * 109.46235 * 305.85278 * 30 16 15 51 51 H 1.09000 * 109.46249 * 65.82172 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1845 2.1980 1.0839 5 6 1.8978 1.8449 2.5207 6 1 1.5177 0.8251 2.5803 7 6 3.1847 1.9634 3.3462 8 6 2.9084 1.4264 4.7527 9 6 1.6477 2.0369 5.2942 10 8 1.4513 1.9829 6.4898 11 7 0.7300 2.6306 4.5302 12 6 0.8602 2.8133 3.0897 13 7 2.6421 3.3363 0.6451 14 7 2.7706 3.2961 -0.6332 15 6 2.3982 2.1207 -1.0821 16 7 2.3976 1.7063 -2.4044 17 6 1.0743 1.2062 -2.7985 18 6 1.0706 0.8950 -4.2969 19 6 2.1439 -0.1547 -4.5980 20 6 3.5051 0.3711 -4.1339 21 1 3.7570 1.2722 -4.6929 22 6 4.5584 -0.6799 -4.3726 23 1 5.1262 -1.0737 -3.5426 24 6 4.7972 -1.1389 -5.6507 25 7 4.1054 -0.6598 -6.6613 26 14 6.1032 -2.4412 -5.9467 27 1 6.7341 -2.8122 -4.6545 28 1 5.4757 -3.6425 -6.5536 29 1 7.1377 -1.9046 -6.8671 30 6 3.4383 0.6974 -2.6402 31 1 -0.3633 0.4242 0.9360 32 1 -0.3634 0.5984 -0.8354 33 1 -0.3634 -1.0227 -0.1005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.4877 3.0088 3.4055 37 1 3.9763 1.3779 2.8788 38 1 3.7429 1.6786 5.4069 39 1 2.7971 0.3429 4.7112 40 1 -0.0724 2.9650 4.9604 41 1 1.1691 3.8371 2.8791 42 1 -0.1049 2.6243 2.6197 43 1 0.8473 0.2989 -2.2386 44 1 0.3208 1.9638 -2.5831 45 1 0.0930 0.5091 -4.5860 46 1 1.2832 1.8050 -4.8581 47 1 1.9098 -1.0776 -4.0673 48 1 2.1734 -0.3484 -5.6701 49 1 4.2736 -0.9824 -7.5605 50 1 4.4017 1.0854 -2.3097 51 1 3.2003 -0.2075 -2.0810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647711736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:17 Heat of formation + Delta-G solvation = 21.592301 kcal Electronic energy + Delta-G solvation = -32000.755487 eV Core-core repulsion = 27935.137770 eV Total energy + Delta-G solvation = -4065.617716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.15941 -41.26137 -40.11526 -37.89721 -36.75217 -35.58605 -34.30074 -33.59923 -32.09013 -31.78580 -31.34792 -29.22664 -27.04410 -25.84258 -25.44678 -24.80419 -24.30169 -23.36799 -22.29970 -21.73162 -20.59893 -19.92902 -18.79393 -18.44927 -17.93695 -17.51079 -17.11130 -16.84072 -16.67149 -16.43482 -15.89335 -15.77670 -15.35790 -15.12850 -15.08745 -14.91776 -14.50507 -14.42777 -14.30475 -14.19001 -14.10248 -13.57991 -13.24795 -12.95525 -12.91936 -12.86461 -12.76069 -12.62974 -12.45517 -12.41353 -12.27953 -12.05356 -11.94965 -11.80144 -11.56102 -11.39414 -11.14554 -11.07141 -10.86750 -10.76660 -10.42999 -10.14912 -10.06423 -9.69065 -8.09974 -6.24087 0.64128 1.31160 1.40871 1.44426 1.53800 1.58910 1.75590 2.25882 2.36459 2.50858 3.10504 3.18412 3.40180 3.55815 3.57943 3.70442 3.86601 3.94269 3.94791 4.01122 4.08252 4.17325 4.23605 4.29765 4.39605 4.41227 4.47394 4.51271 4.57332 4.67303 4.74722 4.78083 4.81774 4.85801 4.89596 4.93316 4.97368 4.98181 5.08014 5.15544 5.20420 5.28851 5.42930 5.57767 5.62827 5.76111 5.77970 5.98882 6.13912 6.26140 6.30863 6.34769 6.86579 7.16744 7.44356 7.75462 8.94970 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.002588 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.214442 B =10816.793925 C =11387.745580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 N -0.486 5.486 4 C 0.194 3.806 5 C -0.006 4.006 6 H 0.124 0.876 7 C -0.108 4.108 8 C -0.125 4.125 9 C 0.517 3.483 10 O -0.606 6.606 11 N -0.706 5.706 12 C 0.126 3.874 13 N -0.311 5.311 14 N -0.315 5.315 15 C 0.355 3.645 16 N -0.463 5.463 17 C 0.063 3.937 18 C -0.110 4.110 19 C -0.103 4.103 20 C 0.056 3.944 21 H -0.005 1.005 22 C -0.534 4.534 23 H 0.053 0.947 24 C 0.019 3.981 25 N -0.912 5.912 26 Si 0.952 3.048 27 H -0.267 1.267 28 H -0.278 1.278 29 H -0.286 1.286 30 C 0.091 3.909 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.408 0.592 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.039 0.961 48 H 0.063 0.937 49 H 0.261 0.739 50 H 0.046 0.954 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 -1.112 18.513 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.042 4.042 3 N -0.183 5.183 4 C -0.075 4.075 5 C -0.027 4.027 6 H 0.142 0.858 7 C -0.147 4.147 8 C -0.164 4.164 9 C 0.306 3.694 10 O -0.488 6.488 11 N -0.357 5.357 12 C 0.001 3.999 13 N -0.151 5.151 14 N -0.157 5.157 15 C -0.001 4.001 16 N -0.187 5.187 17 C -0.063 4.063 18 C -0.148 4.148 19 C -0.141 4.141 20 C 0.037 3.963 21 H 0.013 0.987 22 C -0.572 4.572 23 H 0.071 0.929 24 C -0.181 4.181 25 N -0.551 5.551 26 Si 0.778 3.222 27 H -0.191 1.191 28 H -0.203 1.203 29 H -0.212 1.212 30 C -0.036 4.036 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.144 0.856 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.244 0.756 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.495 0.573 18.461 21.243 hybrid contribution 0.162 -1.998 -0.499 2.066 sum -10.333 -1.425 17.962 20.771 Atomic orbital electron populations 1.22294 0.91607 1.05128 1.03655 1.22487 0.97726 0.77683 1.06267 1.47713 1.49106 1.14508 1.06947 1.24641 1.02586 0.88434 0.91880 1.19921 0.97708 1.01990 0.83063 0.85822 1.21642 0.96204 1.03371 0.93488 1.21649 0.94919 1.03214 0.96666 1.20644 0.85807 0.77181 0.85815 1.90759 1.79295 1.61226 1.17523 1.45379 1.22554 1.59162 1.08597 1.21349 0.99959 0.99402 0.79201 1.74034 1.18339 1.20120 1.02614 1.74461 1.20890 1.16669 1.03657 1.23195 1.01092 0.89829 0.86032 1.59053 1.07884 1.42169 1.09620 1.22467 0.87083 0.99209 0.97530 1.21623 0.99837 0.99388 0.93983 1.21480 0.94145 0.96044 1.02459 1.18589 0.94178 0.94601 0.88974 0.98658 1.21409 1.19957 1.22581 0.93268 0.92878 1.25645 0.97943 0.98488 0.95983 1.70018 1.41484 1.43984 0.99615 0.85601 0.79244 0.79185 0.78178 1.19131 1.20346 1.21186 1.22162 0.91529 0.90310 0.99572 0.90128 0.92567 0.87873 0.89416 0.85557 0.90770 0.89709 0.87049 0.85780 0.75567 0.90806 0.88126 0.91626 0.90180 0.89512 0.93262 0.94228 0.91812 0.92952 0.93543 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 9.61 71.98 0.69 -1.09 16 2 C 0.08 1.22 5.50 86.38 0.47 1.69 16 3 N -0.49 -11.18 2.80 -514.85 -1.44 -12.62 16 4 C 0.19 4.19 6.58 137.64 0.91 5.10 16 5 C -0.01 -0.07 2.63 -11.45 -0.03 -0.10 16 6 H 0.12 0.86 7.11 -2.39 -0.02 0.84 16 7 C -0.11 -1.35 5.31 30.73 0.16 -1.19 16 8 C -0.12 -1.39 6.03 29.71 0.18 -1.21 16 9 C 0.52 8.61 7.71 87.71 0.68 9.29 16 10 O -0.61 -15.68 17.78 -3.02 -0.05 -15.73 16 11 N -0.71 -8.52 5.45 -467.29 -2.55 -11.06 16 12 C 0.13 1.37 6.46 86.49 0.56 1.93 16 13 N -0.31 -9.49 12.12 -49.53 -0.60 -10.09 16 14 N -0.32 -11.66 12.23 -58.01 -0.71 -12.37 16 15 C 0.35 11.58 6.66 260.11 1.73 13.31 16 16 N -0.46 -16.45 4.69 -706.15 -3.31 -19.76 16 17 C 0.06 1.84 4.21 86.33 0.36 2.21 16 18 C -0.11 -3.70 6.09 30.65 0.19 -3.51 16 19 C -0.10 -4.37 5.02 30.68 0.15 -4.22 16 20 C 0.06 2.64 2.27 -11.48 -0.03 2.62 16 21 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 22 C -0.53 -27.76 8.56 25.60 0.22 -27.54 16 23 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 24 C 0.02 1.00 5.30 84.66 0.45 1.44 16 25 N -0.91 -50.46 11.35 21.45 0.24 -50.21 16 26 Si 0.95 41.67 29.54 68.60 2.03 43.69 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 29 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 30 C 0.09 3.59 4.45 86.33 0.38 3.97 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.80 6.22 -2.39 -0.01 0.78 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 1.70 4.62 -2.39 -0.01 1.69 16 35 H 0.13 1.14 7.53 -2.39 -0.02 1.12 16 36 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.41 4.25 8.80 -92.71 -0.82 3.43 16 41 H 0.07 1.05 8.06 -2.39 -0.02 1.03 16 42 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.07 1.59 4.14 -2.39 -0.01 1.58 16 44 H 0.08 2.13 8.06 -2.39 -0.02 2.11 16 45 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.06 3.15 6.15 -2.39 -0.01 3.14 16 49 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 50 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 51 H 0.04 1.58 5.96 -2.39 -0.01 1.57 16 Total: -1.00 -73.18 390.04 0.83 -72.35 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.14 Total: 13.10 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: 7.08 Total: 2.70 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -8.36 Total: -116.12 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.05 Total: -15.73 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -73.18 0.83 -72.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647711736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.945 kcal (2) G-P(sol) polarization free energy of solvation -73.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds