Wall clock time and date at job start Wed Apr 1 2020 05:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36930 * 119.99731 * 2 1 4 4 H 1.08006 * 119.99896 * 205.72212 * 3 2 1 5 5 C 1.38810 * 120.00227 * 25.73218 * 3 2 1 6 6 N 1.31615 * 120.00044 * 11.58318 * 5 3 2 7 7 Si 1.86804 * 120.00113 * 191.59060 * 5 3 2 8 8 H 1.48497 * 109.47084 * 89.99748 * 7 5 3 9 9 H 1.48508 * 109.46861 * 209.99619 * 7 5 3 10 10 H 1.48491 * 109.47076 * 329.99606 * 7 5 3 11 11 C 1.46503 * 120.00213 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46822 * 269.99361 * 11 2 1 13 13 H 1.08998 * 110.88781 * 302.57106 * 12 11 2 14 14 C 1.55158 * 111.00266 * 66.45412 * 12 11 2 15 15 C 1.54328 * 102.94404 * 153.61172 * 14 12 11 16 16 N 1.47025 * 107.26955 * 337.80577 * 15 14 12 17 17 C 1.34779 * 125.64908 * 178.89863 * 16 15 14 18 18 O 1.21281 * 119.99509 * 5.61535 * 17 16 15 19 19 C 1.50695 * 119.99901 * 185.61225 * 17 16 15 20 20 H 1.09001 * 109.46013 * 35.00877 * 19 17 16 21 21 C 1.53107 * 109.45708 * 275.04532 * 19 17 16 22 22 C 1.53424 * 109.58095 * 169.92748 * 21 19 17 23 23 C 1.50592 * 108.33699 * 49.82104 * 22 21 19 24 24 N 1.32912 * 129.16485 * 163.43395 * 23 22 21 25 25 N 1.29017 * 108.63685 * 180.11712 * 24 23 22 26 26 N 1.29103 * 110.26025 * 359.97438 * 25 24 23 27 27 C 1.46498 * 126.00945 * 179.97438 * 26 25 24 28 28 C 1.34402 * 107.98458 * 359.93343 * 26 25 24 29 29 C 1.50535 * 129.25438 * 180.14647 * 28 26 25 30 30 C 1.47431 * 108.70166 * 359.17009 * 16 15 14 31 31 H 1.09006 * 109.46796 * 269.15157 * 1 2 3 32 32 H 1.08996 * 109.47783 * 29.15565 * 1 2 3 33 33 H 1.09006 * 109.47010 * 149.15591 * 1 2 3 34 34 H 0.96999 * 120.00604 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.47357 * 149.99174 * 11 2 1 36 36 H 1.09003 * 109.47023 * 29.99737 * 11 2 1 37 37 H 1.09003 * 110.71982 * 35.24992 * 14 12 11 38 38 H 1.09001 * 110.87541 * 272.04379 * 14 12 11 39 39 H 1.08996 * 109.88222 * 218.38967 * 15 14 12 40 40 H 1.09000 * 109.88307 * 97.21915 * 15 14 12 41 41 H 1.08996 * 109.45341 * 289.95573 * 21 19 17 42 42 H 1.08994 * 109.45541 * 49.89324 * 21 19 17 43 43 H 1.08996 * 109.69295 * 169.53775 * 22 21 19 44 44 H 1.09000 * 109.68895 * 290.11027 * 22 21 19 45 45 H 1.08994 * 109.47356 * 270.02388 * 27 26 25 46 46 H 1.09004 * 109.46765 * 30.02265 * 27 26 25 47 47 H 1.08996 * 109.47412 * 150.01693 * 27 26 25 48 48 H 1.09002 * 109.68984 * 43.80093 * 29 28 26 49 49 H 1.08995 * 109.72771 * 283.23829 * 29 28 26 50 50 H 1.09000 * 110.36867 * 142.73718 * 30 16 15 51 51 H 1.09007 * 110.36365 * 265.05880 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1494 1.2323 -0.4060 5 6 1.5588 2.3284 0.5219 6 7 0.4457 2.2344 1.2179 7 14 2.3434 3.9994 0.2363 8 1 1.8041 4.5923 -1.0139 9 1 2.0348 4.8934 1.3813 10 1 3.8148 3.8411 0.1144 11 6 2.1975 -1.2687 -0.0006 12 6 2.4527 -1.7109 1.4417 13 1 3.0022 -0.9465 1.9911 14 6 1.1226 -2.0632 2.1589 15 6 1.5680 -3.0751 3.2356 16 7 2.8448 -3.6524 2.7905 17 6 3.5727 -4.5638 3.4659 18 8 3.1371 -5.0514 4.4874 19 6 4.9276 -4.9769 2.9518 20 1 5.4168 -4.1202 2.4881 21 6 4.7617 -6.0918 1.9155 22 6 6.1008 -6.3408 1.2093 23 6 7.1679 -6.5007 2.2598 24 7 8.3888 -7.0134 2.1449 25 7 8.9692 -6.9580 3.2958 26 7 8.1802 -6.4278 4.1694 27 6 8.4892 -6.2000 5.5832 28 6 7.0257 -6.1207 3.5535 29 6 5.7846 -5.4835 4.1190 30 6 3.2004 -3.0643 1.4862 31 1 -0.3633 -0.0152 1.0276 32 1 -0.3634 0.8974 -0.5006 33 1 -0.3633 -0.8824 -0.5269 34 1 0.0329 3.0327 1.5830 35 1 3.1499 -1.1382 -0.5145 36 1 1.6084 -2.0282 -0.5147 37 1 0.4201 -2.5235 1.4641 38 1 0.6835 -1.1783 2.6196 39 1 0.8206 -3.8620 3.3365 40 1 1.7041 -2.5656 4.1895 41 1 4.4389 -7.0057 2.4141 42 1 4.0133 -5.7958 1.1805 43 1 6.0366 -7.2487 0.6097 44 1 6.3410 -5.4928 0.5679 45 1 8.1964 -7.0742 6.1645 46 1 9.5596 -6.0291 5.6981 47 1 7.9418 -5.3271 5.9387 48 1 6.0612 -4.6478 4.7619 49 1 5.2228 -6.2192 4.6944 50 1 4.2769 -2.9057 1.4223 51 1 2.8622 -3.7088 0.6747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664830102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:19 Heat of formation + Delta-G solvation = 80.359409 kcal Electronic energy + Delta-G solvation = -31176.891151 eV Core-core repulsion = 27113.821768 eV Total energy + Delta-G solvation = -4063.069383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.65488 -40.31603 -38.00038 -36.69215 -35.37428 -35.16204 -32.25946 -31.10252 -30.90155 -30.13376 -29.14695 -28.15190 -26.07538 -25.58237 -24.94515 -23.71199 -22.44756 -21.67354 -21.25960 -20.22959 -19.71829 -18.95502 -17.58671 -17.29820 -16.87110 -16.64614 -16.08336 -15.45514 -14.97630 -14.77026 -14.48548 -14.20706 -14.18592 -14.00140 -13.66498 -13.63489 -13.40197 -13.31721 -13.15929 -12.95257 -12.75029 -12.43253 -12.15086 -12.11178 -11.75963 -11.67064 -11.51087 -11.38172 -11.29468 -11.04809 -10.86430 -10.81386 -10.76236 -10.51112 -10.22924 -10.22551 -10.06330 -9.94538 -9.86988 -9.74148 -9.08166 -8.59426 -8.55187 -6.77822 -5.80014 -3.26747 1.29790 2.02517 2.30544 2.55839 2.96501 3.33975 3.41094 3.41628 3.85518 4.08643 4.26230 4.38168 4.44242 4.49528 4.54443 4.57553 4.79241 4.84740 4.86494 4.92228 5.10311 5.12056 5.18522 5.23519 5.30359 5.42211 5.45048 5.54538 5.55832 5.58765 5.67909 5.73209 5.74867 5.82675 5.87137 5.97057 6.00764 6.13886 6.23935 6.28403 6.30604 6.48355 6.59373 6.66948 6.77096 6.93443 7.31061 7.56553 7.65321 7.76030 8.11903 8.26759 8.36690 9.18557 9.81168 10.31404 11.25998 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.002334 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.090086 B =11993.827045 C =12543.108737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.597 5.597 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.163 3.837 12 C -0.116 4.116 13 H 0.084 0.916 14 C -0.114 4.114 15 C 0.107 3.893 16 N -0.610 5.610 17 C 0.533 3.467 18 O -0.549 6.549 19 C -0.098 4.098 20 H 0.101 0.899 21 C -0.107 4.107 22 C -0.030 4.030 23 C -0.019 4.019 24 N -0.261 5.261 25 N -0.099 5.099 26 N -0.284 5.284 27 C 0.079 3.921 28 C -0.014 4.014 29 C -0.028 4.028 30 C 0.097 3.903 31 H 0.025 0.975 32 H 0.047 0.953 33 H -0.005 1.005 34 H 0.253 0.747 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.099 0.901 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.072 0.928 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -16.779 5.615 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.035 3.965 12 C -0.138 4.138 13 H 0.102 0.898 14 C -0.152 4.152 15 C -0.015 4.015 16 N -0.343 5.343 17 C 0.321 3.679 18 O -0.427 6.427 19 C -0.120 4.120 20 H 0.119 0.881 21 C -0.146 4.146 22 C -0.069 4.069 23 C -0.160 4.160 24 N -0.125 5.125 25 N -0.077 5.077 26 N -0.076 5.076 27 C -0.062 4.062 28 C -0.148 4.148 29 C -0.068 4.068 30 C -0.026 4.026 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.013 0.987 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.111 0.889 46 H 0.121 0.879 47 H 0.118 0.882 48 H 0.102 0.898 49 H 0.119 0.881 50 H 0.091 0.909 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.453 -17.567 6.055 21.320 hybrid contribution -0.501 1.585 0.521 1.742 sum 9.952 -15.983 6.576 19.943 Atomic orbital electron populations 1.20801 0.82669 0.96333 0.98402 1.43887 1.01785 1.00544 1.85673 1.19178 1.00044 0.86032 1.33373 0.91552 1.25067 0.98000 0.98654 0.97647 1.70028 1.20374 1.27709 1.36848 0.86294 0.78878 0.84289 0.77284 1.21481 1.21791 1.20493 1.20755 0.95964 0.88488 0.91336 1.23162 0.95039 0.93878 1.01729 0.89758 1.22595 0.97845 0.98164 0.96563 1.22048 0.84561 0.96188 0.98691 1.48599 1.23048 1.40963 1.21681 1.19977 0.85991 0.78358 0.83531 1.90681 1.72113 1.54693 1.25238 1.21275 0.93333 1.00508 0.96909 0.88081 1.21575 0.97469 0.98033 0.97500 1.19952 0.89168 1.03605 0.94211 1.21694 0.95347 1.04462 0.94456 1.74796 1.06206 1.17418 1.14129 1.78581 1.18178 1.17509 0.93417 1.46819 1.10043 1.39588 1.11164 1.22294 1.04922 1.04237 0.74748 1.21774 0.91411 1.07386 0.94256 1.19965 0.89290 1.00463 0.97038 1.22568 1.00153 0.95665 0.84188 0.95683 0.93458 0.98699 0.93726 0.93524 0.94215 0.91341 0.89206 0.91943 0.91825 0.90565 0.89731 0.89189 0.89357 0.88890 0.87898 0.88200 0.89796 0.88058 0.90920 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.68 8.28 59.85 0.50 4.18 16 2 N -0.60 -13.63 2.83 -181.11 -0.51 -14.15 16 3 C -0.26 -6.58 9.63 -15.06 -0.15 -6.72 16 4 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 5 C 0.01 0.13 5.08 -17.43 -0.09 0.05 16 6 N -0.91 -25.02 10.84 55.49 0.60 -24.41 16 7 Si 0.90 21.01 29.57 -169.99 -5.03 15.98 16 8 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 C 0.16 2.87 5.22 -4.04 -0.02 2.85 16 12 C -0.12 -1.82 3.27 -88.59 -0.29 -2.11 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 14 C -0.11 -1.75 5.29 -24.89 -0.13 -1.89 16 15 C 0.11 1.51 6.87 -3.06 -0.02 1.49 16 16 N -0.61 -7.95 3.33 -170.65 -0.57 -8.52 16 17 C 0.53 6.84 6.93 -10.99 -0.08 6.76 16 18 O -0.55 -8.73 16.23 5.56 0.09 -8.64 16 19 C -0.10 -0.94 1.95 -91.50 -0.18 -1.12 16 20 H 0.10 0.91 6.75 -51.93 -0.35 0.56 16 21 C -0.11 -0.89 5.19 -26.46 -0.14 -1.03 16 22 C -0.03 -0.26 6.30 -27.72 -0.17 -0.43 16 23 C -0.02 -0.22 7.11 -83.12 -0.59 -0.81 16 24 N -0.26 -3.59 12.40 33.16 0.41 -3.18 16 25 N -0.10 -1.28 13.19 60.35 0.80 -0.48 16 26 N -0.28 -2.83 3.73 -64.01 -0.24 -3.07 16 27 C 0.08 0.39 11.27 59.85 0.67 1.07 16 28 C -0.01 -0.15 6.76 -82.49 -0.56 -0.70 16 29 C -0.03 -0.26 4.99 -27.75 -0.14 -0.39 16 30 C 0.10 1.16 6.06 -2.64 -0.02 1.14 16 31 H 0.02 0.60 6.82 -51.93 -0.35 0.24 16 32 H 0.05 1.19 7.09 -51.93 -0.37 0.82 16 33 H -0.01 -0.11 7.90 -51.93 -0.41 -0.52 16 34 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.05 0.80 8.04 -51.93 -0.42 0.38 16 36 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 37 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 38 H 0.09 1.64 7.61 -51.93 -0.40 1.24 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.67 8.12 -51.93 -0.42 0.25 16 42 H 0.08 0.64 7.96 -51.93 -0.41 0.22 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.10 0.32 7.71 -51.93 -0.40 -0.08 16 48 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 49 H 0.10 0.98 7.50 -51.93 -0.39 0.59 16 50 H 0.07 0.76 6.78 -51.93 -0.35 0.41 16 51 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 LS Contribution 400.87 15.07 6.04 6.04 Total: -1.00 -32.90 400.87 -8.23 -41.13 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.43 Total: -3.03 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.40 Total: 2.33 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.49 Total: -53.81 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.90 -8.23 -41.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664830102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.489 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds