Wall clock time and date at job start Wed Apr 1 2020 05:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36930 * 119.99731 * 2 1 4 4 H 1.08006 * 119.99896 * 205.72212 * 3 2 1 5 5 C 1.38810 * 120.00227 * 25.73218 * 3 2 1 6 6 N 1.31615 * 120.00044 * 11.58318 * 5 3 2 7 7 Si 1.86804 * 120.00113 * 191.59060 * 5 3 2 8 8 H 1.48497 * 109.47084 * 89.99748 * 7 5 3 9 9 H 1.48508 * 109.46861 * 209.99619 * 7 5 3 10 10 H 1.48491 * 109.47076 * 329.99606 * 7 5 3 11 11 C 1.46503 * 120.00213 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46822 * 269.99361 * 11 2 1 13 13 H 1.08998 * 110.88781 * 302.57106 * 12 11 2 14 14 C 1.55158 * 111.00266 * 66.45412 * 12 11 2 15 15 C 1.54328 * 102.94404 * 153.61172 * 14 12 11 16 16 N 1.47025 * 107.26955 * 337.80577 * 15 14 12 17 17 C 1.34779 * 125.64908 * 178.89863 * 16 15 14 18 18 O 1.21281 * 119.99509 * 5.61535 * 17 16 15 19 19 C 1.50695 * 119.99901 * 185.61225 * 17 16 15 20 20 H 1.09001 * 109.46013 * 35.00877 * 19 17 16 21 21 C 1.53107 * 109.45708 * 275.04532 * 19 17 16 22 22 C 1.53424 * 109.58095 * 169.92748 * 21 19 17 23 23 C 1.50592 * 108.33699 * 49.82104 * 22 21 19 24 24 N 1.32912 * 129.16485 * 163.43395 * 23 22 21 25 25 N 1.29017 * 108.63685 * 180.11712 * 24 23 22 26 26 N 1.29103 * 110.26025 * 359.97438 * 25 24 23 27 27 C 1.46498 * 126.00945 * 179.97438 * 26 25 24 28 28 C 1.34402 * 107.98458 * 359.93343 * 26 25 24 29 29 C 1.50535 * 129.25438 * 180.14647 * 28 26 25 30 30 C 1.47431 * 108.70166 * 359.17009 * 16 15 14 31 31 H 1.09006 * 109.46796 * 269.15157 * 1 2 3 32 32 H 1.08996 * 109.47783 * 29.15565 * 1 2 3 33 33 H 1.09006 * 109.47010 * 149.15591 * 1 2 3 34 34 H 0.96999 * 120.00604 * 179.97438 * 6 5 3 35 35 H 1.09004 * 109.47357 * 149.99174 * 11 2 1 36 36 H 1.09003 * 109.47023 * 29.99737 * 11 2 1 37 37 H 1.09003 * 110.71982 * 35.24992 * 14 12 11 38 38 H 1.09001 * 110.87541 * 272.04379 * 14 12 11 39 39 H 1.08996 * 109.88222 * 218.38967 * 15 14 12 40 40 H 1.09000 * 109.88307 * 97.21915 * 15 14 12 41 41 H 1.08996 * 109.45341 * 289.95573 * 21 19 17 42 42 H 1.08994 * 109.45541 * 49.89324 * 21 19 17 43 43 H 1.08996 * 109.69295 * 169.53775 * 22 21 19 44 44 H 1.09000 * 109.68895 * 290.11027 * 22 21 19 45 45 H 1.08994 * 109.47356 * 270.02388 * 27 26 25 46 46 H 1.09004 * 109.46765 * 30.02265 * 27 26 25 47 47 H 1.08996 * 109.47412 * 150.01693 * 27 26 25 48 48 H 1.09002 * 109.68984 * 43.80093 * 29 28 26 49 49 H 1.08995 * 109.72771 * 283.23829 * 29 28 26 50 50 H 1.09000 * 110.36867 * 142.73718 * 30 16 15 51 51 H 1.09007 * 110.36365 * 265.05880 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1494 1.2323 -0.4060 5 6 1.5588 2.3284 0.5219 6 7 0.4457 2.2344 1.2179 7 14 2.3434 3.9994 0.2363 8 1 1.8041 4.5923 -1.0139 9 1 2.0348 4.8934 1.3813 10 1 3.8148 3.8411 0.1144 11 6 2.1975 -1.2687 -0.0006 12 6 2.4527 -1.7109 1.4417 13 1 3.0022 -0.9465 1.9911 14 6 1.1226 -2.0632 2.1589 15 6 1.5680 -3.0751 3.2356 16 7 2.8448 -3.6524 2.7905 17 6 3.5727 -4.5638 3.4659 18 8 3.1371 -5.0514 4.4874 19 6 4.9276 -4.9769 2.9518 20 1 5.4168 -4.1202 2.4881 21 6 4.7617 -6.0918 1.9155 22 6 6.1008 -6.3408 1.2093 23 6 7.1679 -6.5007 2.2598 24 7 8.3888 -7.0134 2.1449 25 7 8.9692 -6.9580 3.2958 26 7 8.1802 -6.4278 4.1694 27 6 8.4892 -6.2000 5.5832 28 6 7.0257 -6.1207 3.5535 29 6 5.7846 -5.4835 4.1190 30 6 3.2004 -3.0643 1.4862 31 1 -0.3633 -0.0152 1.0276 32 1 -0.3634 0.8974 -0.5006 33 1 -0.3633 -0.8824 -0.5269 34 1 0.0329 3.0327 1.5830 35 1 3.1499 -1.1382 -0.5145 36 1 1.6084 -2.0282 -0.5147 37 1 0.4201 -2.5235 1.4641 38 1 0.6835 -1.1783 2.6196 39 1 0.8206 -3.8620 3.3365 40 1 1.7041 -2.5656 4.1895 41 1 4.4389 -7.0057 2.4141 42 1 4.0133 -5.7958 1.1805 43 1 6.0366 -7.2487 0.6097 44 1 6.3410 -5.4928 0.5679 45 1 8.1964 -7.0742 6.1645 46 1 9.5596 -6.0291 5.6981 47 1 7.9418 -5.3271 5.9387 48 1 6.0612 -4.6478 4.7619 49 1 5.2228 -6.2192 4.6944 50 1 4.2769 -2.9057 1.4223 51 1 2.8622 -3.7088 0.6747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664830102.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:18 Heat of formation + Delta-G solvation = 60.267444 kcal Electronic energy + Delta-G solvation = -31177.762404 eV Core-core repulsion = 27113.821768 eV Total energy + Delta-G solvation = -4063.940636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.44036 -41.33753 -39.14701 -37.58851 -36.98145 -35.88643 -33.80703 -32.36198 -31.57582 -31.35301 -30.30184 -28.73502 -27.87491 -27.01511 -25.91571 -24.54110 -23.56743 -22.82621 -22.38254 -21.15302 -20.96261 -19.88506 -18.63946 -18.38565 -18.02868 -17.71052 -17.19301 -16.61431 -16.44146 -15.70223 -15.53084 -15.41132 -15.20459 -14.92663 -14.78720 -14.69689 -14.47373 -14.25075 -14.15198 -13.92473 -13.63587 -13.51789 -13.19211 -13.13331 -13.10284 -12.92358 -12.77080 -12.58243 -12.49692 -12.37886 -12.17347 -12.12416 -11.95421 -11.92258 -11.67596 -11.58728 -11.52807 -11.25202 -10.95937 -10.81562 -10.55837 -9.87351 -9.62981 -8.65548 -7.78394 -5.25342 0.52571 1.39762 1.47044 1.48545 1.50582 1.57531 1.59368 1.98057 2.55090 3.11374 3.32827 3.37452 3.61254 3.61318 3.71246 3.77579 3.83615 3.94657 3.99996 4.15132 4.17217 4.23476 4.24394 4.37792 4.42383 4.49643 4.51049 4.56089 4.62684 4.71885 4.73573 4.87638 4.89266 4.90742 4.96631 5.01543 5.03120 5.08698 5.09192 5.15794 5.19987 5.31574 5.34663 5.41353 5.43137 5.59031 5.60554 5.72112 5.81968 6.42079 6.55825 7.10853 7.23541 7.44268 7.96998 8.40289 9.25607 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.002334 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.090086 B =11993.827045 C =12543.108737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.613 5.613 3 C -0.254 4.254 4 H 0.070 0.930 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.958 3.042 8 H -0.289 1.289 9 H -0.301 1.301 10 H -0.268 1.268 11 C 0.160 3.840 12 C -0.111 4.111 13 H 0.051 0.949 14 C -0.105 4.105 15 C 0.113 3.887 16 N -0.612 5.612 17 C 0.535 3.465 18 O -0.582 6.582 19 C -0.091 4.091 20 H 0.114 0.886 21 C -0.100 4.100 22 C -0.026 4.026 23 C -0.031 4.031 24 N -0.298 5.298 25 N -0.128 5.128 26 N -0.278 5.278 27 C 0.066 3.934 28 C -0.014 4.014 29 C -0.022 4.022 30 C 0.109 3.891 31 H 0.004 0.996 32 H 0.013 0.987 33 H 0.028 0.972 34 H 0.245 0.755 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.096 0.904 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -18.030 4.896 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.336 5.336 3 C -0.385 4.385 4 H 0.088 0.912 5 C -0.246 4.246 6 N -0.582 5.582 7 Si 0.788 3.212 8 H -0.217 1.217 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.034 3.966 12 C -0.133 4.133 13 H 0.069 0.931 14 C -0.143 4.143 15 C -0.009 4.009 16 N -0.344 5.344 17 C 0.325 3.675 18 O -0.463 6.463 19 C -0.113 4.113 20 H 0.132 0.868 21 C -0.138 4.138 22 C -0.065 4.065 23 C -0.172 4.172 24 N -0.161 5.161 25 N -0.106 5.106 26 N -0.070 5.070 27 C -0.074 4.074 28 C -0.149 4.149 29 C -0.061 4.061 30 C -0.014 4.014 31 H 0.023 0.977 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.138 0.862 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.114 0.886 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.613 -18.852 5.323 22.773 hybrid contribution -0.849 1.921 0.786 2.242 sum 10.764 -16.931 6.110 20.973 Atomic orbital electron populations 1.20547 0.83026 0.96121 0.97157 1.44108 1.01970 1.01728 1.85793 1.19492 0.99989 0.87259 1.31742 0.91191 1.25722 0.98833 1.01620 0.98400 1.70182 1.21803 1.27716 1.38486 0.85399 0.78634 0.80768 0.76440 1.21657 1.22770 1.19302 1.20942 0.96249 0.86822 0.92633 1.22875 0.95305 0.95322 0.99782 0.93075 1.22426 0.97904 0.97097 0.96906 1.21870 0.85587 0.95914 0.97562 1.48626 1.22567 1.41002 1.22177 1.20479 0.86639 0.77540 0.82822 1.90674 1.72999 1.55853 1.26730 1.21276 0.91220 1.01460 0.97335 0.86753 1.21546 0.97723 0.97236 0.97331 1.20038 0.88200 1.04563 0.93715 1.22236 0.95239 1.04044 0.95712 1.74744 1.07532 1.18895 1.14963 1.78498 1.19135 1.19004 0.93937 1.47199 1.09510 1.38036 1.12294 1.22736 1.06215 1.05904 0.72502 1.21936 0.91725 1.07176 0.94100 1.19929 0.88593 1.00626 0.96956 1.22547 1.01050 0.93463 0.84326 0.97739 0.96795 0.95354 0.94601 0.92547 0.91616 0.90318 0.92910 0.91285 0.93242 0.91121 0.88162 0.88424 0.88033 0.87234 0.86760 0.86225 0.88651 0.88574 0.88608 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.99 8.28 127.77 1.06 9.04 16 2 N -0.61 -27.50 2.83 -726.92 -2.06 -29.56 16 3 C -0.25 -12.93 9.63 84.03 0.81 -12.12 16 4 H 0.07 3.45 7.85 -2.91 -0.02 3.43 16 5 C -0.05 -2.70 5.08 84.86 0.43 -2.27 16 6 N -0.94 -53.12 10.84 21.65 0.23 -52.88 16 7 Si 0.96 43.54 29.57 68.60 2.03 45.57 16 8 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 9 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 C 0.16 5.23 5.22 86.38 0.45 5.68 16 12 C -0.11 -3.28 3.27 -9.48 -0.03 -3.31 16 13 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 14 C -0.11 -3.17 5.29 31.78 0.17 -3.00 16 15 C 0.11 3.07 6.87 86.73 0.60 3.67 16 16 N -0.61 -14.33 3.33 -812.20 -2.70 -17.03 16 17 C 0.54 12.36 6.93 87.66 0.61 12.97 16 18 O -0.58 -17.57 16.23 -3.03 -0.05 -17.62 16 19 C -0.09 -1.46 1.95 -11.37 -0.02 -1.49 16 20 H 0.11 1.58 6.75 -2.39 -0.02 1.57 16 21 C -0.10 -1.33 5.19 30.77 0.16 -1.17 16 22 C -0.03 -0.37 6.30 29.96 0.19 -0.18 16 23 C -0.03 -0.65 7.11 41.75 0.30 -0.35 16 24 N -0.30 -7.98 12.40 -48.99 -0.61 -8.58 16 25 N -0.13 -3.23 13.19 37.02 0.49 -2.74 16 26 N -0.28 -5.12 3.73 -356.42 -1.33 -6.45 16 27 C 0.07 0.52 11.27 127.77 1.44 1.96 16 28 C -0.01 -0.26 6.76 41.50 0.28 0.02 16 29 C -0.02 -0.34 4.99 29.93 0.15 -0.19 16 30 C 0.11 2.17 6.06 86.78 0.53 2.69 16 31 H 0.00 0.21 6.82 -2.38 -0.02 0.20 16 32 H 0.01 0.68 7.09 -2.39 -0.02 0.67 16 33 H 0.03 1.07 7.90 -2.38 -0.02 1.05 16 34 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 35 H 0.06 1.75 8.04 -2.39 -0.02 1.73 16 36 H 0.07 1.83 7.87 -2.39 -0.02 1.81 16 37 H 0.08 2.20 8.01 -2.39 -0.02 2.18 16 38 H 0.05 1.99 7.61 -2.39 -0.02 1.97 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 42 H 0.10 1.05 7.96 -2.39 -0.02 1.03 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.12 0.47 7.71 -2.39 -0.02 0.45 16 48 H 0.10 1.29 7.87 -2.39 -0.02 1.27 16 49 H 0.10 1.67 7.50 -2.39 -0.02 1.66 16 50 H 0.10 1.54 6.78 -2.39 -0.02 1.53 16 51 H 0.10 1.51 8.03 -2.38 -0.02 1.49 16 Total: -1.00 -73.29 400.87 4.03 -69.26 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.92 Total: 8.08 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.11 Total: 11.95 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -5.98 Total: -117.25 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.05 Total: -17.62 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -73.29 4.03 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664830102.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.528 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds