Wall clock time and date at job start Wed Apr 1 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40442 * 126.82090 * 2 1 4 4 C 1.30718 * 106.78912 * 180.25824 * 3 2 1 5 5 C 1.50697 * 125.52665 * 179.78460 * 4 3 2 6 6 C 1.53000 * 117.49712 * 8.70862 * 5 4 3 7 7 C 1.53005 * 117.49972 * 300.04834 * 5 4 3 8 8 N 1.33245 * 108.94564 * 359.75032 * 4 3 2 9 9 C 1.30827 * 109.83062 * 0.02562 * 8 4 3 10 10 C 1.50703 * 125.96318 * 180.02562 * 9 8 4 11 11 C 1.50697 * 109.47046 * 90.02254 * 10 9 8 12 12 O 1.21281 * 120.00242 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00207 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47257 * 179.97438 * 14 13 11 16 16 H 1.08996 * 110.05786 * 306.41713 * 15 14 13 17 17 C 1.53879 * 110.03196 * 67.83445 * 15 14 13 18 18 C 1.54267 * 106.60134 * 119.28084 * 17 15 14 19 19 C 1.54893 * 104.19282 * 23.60896 * 18 17 15 20 20 H 1.09003 * 110.91041 * 80.44593 * 19 18 17 21 21 N 1.46499 * 110.75633 * 203.74048 * 19 18 17 22 22 C 1.36935 * 119.99938 * 268.33095 * 21 19 18 23 23 H 1.08000 * 120.00518 * 359.72965 * 22 21 19 24 24 C 1.38817 * 119.99990 * 179.97438 * 22 21 19 25 25 N 1.31614 * 119.99892 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99858 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47174 * 89.99644 * 26 24 22 28 28 H 1.48494 * 109.46800 * 209.99692 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99394 * 26 24 22 30 30 C 1.54270 * 110.03237 * 184.99531 * 15 14 13 31 31 H 1.09000 * 109.47118 * 270.17510 * 1 2 3 32 32 H 1.09006 * 109.47048 * 30.17365 * 1 2 3 33 33 H 1.09005 * 109.47073 * 150.17051 * 1 2 3 34 34 H 1.09003 * 115.54861 * 154.37759 * 5 4 3 35 35 H 1.09000 * 117.50033 * 359.97438 * 6 5 4 36 36 H 1.09004 * 117.49661 * 145.02117 * 6 5 4 37 37 H 1.09002 * 117.49663 * 214.97628 * 7 5 4 38 38 H 1.08990 * 117.49709 * 359.97438 * 7 5 4 39 39 H 1.08999 * 109.46502 * 330.01847 * 10 9 8 40 40 H 1.08999 * 109.47081 * 210.02526 * 10 9 8 41 41 H 0.97004 * 119.99857 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.47260 * 59.99379 * 14 13 11 43 43 H 1.08999 * 109.47225 * 299.99578 * 14 13 11 44 44 H 1.08994 * 110.03346 * 238.57245 * 17 15 14 45 45 H 1.09005 * 110.02974 * 359.94800 * 17 15 14 46 46 H 1.08998 * 110.48796 * 264.93589 * 18 17 15 47 47 H 1.08998 * 110.48646 * 142.28496 * 18 17 15 48 48 H 0.96999 * 119.99984 * 88.33030 * 21 19 18 49 49 H 0.97005 * 119.99715 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.48043 * 98.42991 * 30 15 14 51 51 H 1.09002 * 110.60152 * 335.84626 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6765 -0.0056 5 6 4.7776 1.5288 -0.0124 6 6 4.6025 3.0348 0.1927 7 6 4.9701 2.4878 -1.1890 8 7 3.5096 -0.6557 -0.0037 9 6 2.2707 -1.0761 0.0027 10 6 1.8246 -2.5156 0.0073 11 6 1.6818 -2.9926 1.4297 12 8 1.9194 -2.2382 2.3491 13 7 1.2911 -4.2580 1.6800 14 6 1.1517 -4.7217 3.0626 15 6 0.6990 -6.1831 3.0673 16 1 -0.2009 -6.2976 2.4631 17 6 1.8198 -7.0839 2.5196 18 6 2.1903 -8.0643 3.6516 19 6 0.9225 -8.1149 4.5401 20 1 0.1745 -8.7829 4.1131 21 7 1.2615 -8.5234 5.9056 22 6 1.2224 -9.8472 6.2537 23 1 0.9375 -10.5897 5.5230 24 6 1.5441 -10.2344 7.5474 25 7 1.5061 -11.5067 7.8822 26 14 2.0296 -8.9495 8.8135 27 1 0.8164 -8.4713 9.5238 28 1 2.9716 -9.5499 9.7918 29 1 2.6868 -7.8059 8.1311 30 6 0.4274 -6.6476 4.5131 31 1 -0.3633 0.0031 1.0277 32 1 -0.3633 0.8885 -0.5166 33 1 -0.3633 -0.8915 -0.5112 34 1 5.6689 1.0637 0.4089 35 1 3.5883 3.4092 0.3321 36 1 5.3788 3.5607 0.7486 37 1 5.9881 2.6540 -1.5414 38 1 4.1982 2.5020 -1.9582 39 1 2.5651 -3.1270 -0.5085 40 1 0.8649 -2.6002 -0.5024 41 1 1.1015 -4.8615 0.9446 42 1 0.4108 -4.1104 3.5779 43 1 2.1112 -4.6366 3.5729 44 1 1.4640 -7.6355 1.6495 45 1 2.6860 -6.4797 2.2496 46 1 3.0399 -7.6867 4.2205 47 1 2.4105 -9.0512 3.2447 48 1 1.5136 -7.8562 6.5630 49 1 1.7305 -11.7772 8.7863 50 1 -0.6388 -6.6006 4.7349 51 1 0.9908 -6.0417 5.2228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691272110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:08 Heat of formation + Delta-G solvation = 81.601510 kcal Electronic energy + Delta-G solvation = -29438.192592 eV Core-core repulsion = 25375.177070 eV Total energy + Delta-G solvation = -4063.015522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51925 -40.03673 -38.31820 -37.56626 -35.15590 -34.26678 -33.55211 -32.96780 -31.12725 -29.83907 -28.83218 -27.80140 -27.34886 -24.49220 -24.08199 -22.76830 -22.72574 -21.68714 -20.64435 -20.23467 -19.86956 -19.44924 -17.69345 -17.53053 -17.41725 -16.53423 -16.12508 -15.92388 -15.71013 -15.37065 -15.01007 -14.90206 -14.28574 -14.08848 -13.94863 -13.85604 -13.59739 -13.34622 -13.08642 -12.77717 -12.59154 -12.48208 -12.43599 -12.22436 -12.05865 -11.86326 -11.38313 -11.27019 -11.04167 -10.89892 -10.86800 -10.69942 -10.63482 -10.45355 -10.33233 -10.26412 -10.24194 -9.97534 -9.89417 -9.59772 -9.49526 -9.33060 -8.92011 -7.27303 -5.78578 -3.13955 1.19674 1.90195 2.25933 2.37677 2.91649 3.37383 3.40714 3.42342 3.45408 3.60133 3.95714 4.05243 4.35719 4.40092 4.47236 4.58166 4.59319 4.65288 4.68666 4.77080 4.78686 4.83443 4.87763 4.95329 5.18149 5.25555 5.36931 5.42941 5.43714 5.54060 5.59463 5.66945 5.70955 5.76566 5.76969 5.88456 5.92260 5.98149 6.03989 6.12009 6.18392 6.20999 6.24513 6.39091 6.41039 6.57001 6.76784 6.95675 7.14673 7.81660 7.86335 7.98108 8.41017 9.19524 9.92357 10.11922 11.39700 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.001665 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.584997 B =16812.252942 C =17387.737645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.373 5.373 3 N -0.314 5.314 4 C 0.257 3.743 5 C -0.072 4.072 6 C -0.160 4.160 7 C -0.159 4.159 8 N -0.525 5.525 9 C 0.301 3.699 10 C -0.066 4.066 11 C 0.516 3.484 12 O -0.527 6.527 13 N -0.723 5.723 14 C 0.127 3.873 15 C -0.100 4.100 16 H 0.076 0.924 17 C -0.121 4.121 18 C -0.144 4.144 19 C 0.182 3.818 20 H 0.065 0.935 21 N -0.745 5.745 22 C -0.245 4.245 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C -0.127 4.127 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.403 0.597 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.067 0.933 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.233 25.572 -23.577 34.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.163 5.163 3 N -0.142 5.142 4 C -0.025 4.025 5 C -0.092 4.092 6 C -0.198 4.198 7 C -0.197 4.197 8 N -0.252 5.252 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.299 3.701 12 O -0.403 6.403 13 N -0.375 5.375 14 C 0.004 3.996 15 C -0.119 4.119 16 H 0.095 0.905 17 C -0.159 4.159 18 C -0.185 4.185 19 C 0.072 3.928 20 H 0.083 0.917 21 N -0.386 5.386 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 C -0.166 4.166 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.151 0.849 40 H 0.135 0.865 41 H 0.237 0.763 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.127 26.389 -22.858 34.931 hybrid contribution 0.031 0.204 0.720 0.749 sum -1.096 26.593 -22.139 34.619 Atomic orbital electron populations 1.21977 0.73822 1.04713 1.04243 1.50065 1.07791 1.03751 1.54670 1.77933 1.01339 1.07360 1.27617 1.23041 0.92418 0.89135 0.97856 1.20069 0.93466 0.89945 1.05742 1.23049 1.03836 0.93651 0.99291 1.23037 1.03224 1.01776 0.91679 1.70214 1.19348 1.10940 1.24739 1.23236 0.86183 0.91328 0.96878 1.20182 1.05042 0.88586 0.97084 1.20070 0.77432 0.82377 0.90199 1.90797 1.48673 1.54660 1.46140 1.45969 1.69294 1.12320 1.09888 1.21599 1.01924 0.94606 0.81500 1.21956 0.98886 0.92585 0.98500 0.90529 1.22223 0.97375 0.97576 0.98759 1.23042 1.00812 0.98157 0.96467 1.21138 0.93760 0.92043 0.85866 0.91706 1.42746 1.82680 1.05738 1.07421 1.19095 1.39104 0.82949 0.96346 0.89196 1.24675 1.01596 0.95698 0.97137 1.69700 1.55155 1.13966 1.19313 0.86565 0.78343 0.81531 0.82184 1.21080 1.21741 1.20289 1.22650 1.01296 0.98414 0.94240 0.89920 0.88766 0.89095 0.85081 0.87886 0.87791 0.87709 0.88634 0.84854 0.86530 0.76311 0.91476 0.91041 0.92123 0.92214 0.91973 0.92046 0.80578 0.93062 0.91469 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.33 59.85 0.68 1.21 16 2 N -0.37 -3.87 4.04 -65.09 -0.26 -4.13 16 3 N -0.31 -3.91 12.24 32.42 0.40 -3.51 16 4 C 0.26 3.23 7.69 -156.85 -1.21 2.03 16 5 C -0.07 -0.68 6.33 -91.77 -0.58 -1.26 16 6 C -0.16 -1.20 10.14 -26.69 -0.27 -1.47 16 7 C -0.16 -1.11 10.24 -26.69 -0.27 -1.39 16 8 N -0.53 -7.00 11.19 -8.16 -0.09 -7.09 16 9 C 0.30 3.26 6.48 -155.70 -1.01 2.26 16 10 C -0.07 -0.44 6.03 -29.03 -0.17 -0.61 16 11 C 0.52 5.11 7.82 -10.99 -0.09 5.02 16 12 O -0.53 -8.00 16.03 5.56 0.09 -7.91 16 13 N -0.72 -5.75 5.34 -60.30 -0.32 -6.07 16 14 C 0.13 1.32 4.69 -4.05 -0.02 1.31 16 15 C -0.10 -1.05 2.96 -89.50 -0.27 -1.32 16 16 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.12 -1.37 6.19 -25.61 -0.16 -1.53 16 18 C -0.14 -2.30 6.51 -25.07 -0.16 -2.47 16 19 C 0.18 3.27 3.56 -65.94 -0.23 3.04 16 20 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 21 N -0.74 -17.19 5.03 -51.50 -0.26 -17.45 16 22 C -0.25 -6.81 10.44 -15.06 -0.16 -6.96 16 23 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -29.16 13.97 55.49 0.78 -28.39 16 26 Si 0.88 22.11 27.74 -169.99 -4.71 17.40 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 30 C -0.13 -1.78 5.98 -25.07 -0.15 -1.93 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.21 7.10 -51.93 -0.37 -0.16 16 34 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 0.87 7.88 -51.93 -0.41 0.46 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.12 0.28 7.12 -51.93 -0.37 -0.09 16 41 H 0.40 1.93 8.35 -40.82 -0.34 1.59 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.65 7.61 -51.93 -0.40 0.25 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.36 8.28 5.62 -40.82 -0.23 8.05 16 49 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 0.98 7.73 -51.93 -0.40 0.58 16 LS Contribution 418.05 15.07 6.30 6.30 Total: -1.00 -38.41 418.05 -10.70 -49.11 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -8.44 Total: 5.76 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -4.16 Total: -4.04 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.24 Total: -66.63 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -38.41 -10.70 -49.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691272110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.711 kcal (2) G-P(sol) polarization free energy of solvation -38.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds