Wall clock time and date at job start Wed Apr 1 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40442 * 126.82090 * 2 1 4 4 C 1.30718 * 106.78912 * 180.25824 * 3 2 1 5 5 C 1.50697 * 125.52665 * 179.78460 * 4 3 2 6 6 C 1.53000 * 117.49712 * 8.70862 * 5 4 3 7 7 C 1.53005 * 117.49972 * 300.04834 * 5 4 3 8 8 N 1.33245 * 108.94564 * 359.75032 * 4 3 2 9 9 C 1.30827 * 109.83062 * 0.02562 * 8 4 3 10 10 C 1.50703 * 125.96318 * 180.02562 * 9 8 4 11 11 C 1.50697 * 109.47046 * 90.02254 * 10 9 8 12 12 O 1.21281 * 120.00242 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99872 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00207 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47257 * 179.97438 * 14 13 11 16 16 H 1.08996 * 110.05786 * 306.41713 * 15 14 13 17 17 C 1.53879 * 110.03196 * 67.83445 * 15 14 13 18 18 C 1.54267 * 106.60134 * 119.28084 * 17 15 14 19 19 C 1.54893 * 104.19282 * 23.60896 * 18 17 15 20 20 H 1.09003 * 110.91041 * 80.44593 * 19 18 17 21 21 N 1.46499 * 110.75633 * 203.74048 * 19 18 17 22 22 C 1.36935 * 119.99938 * 268.33095 * 21 19 18 23 23 H 1.08000 * 120.00518 * 359.72965 * 22 21 19 24 24 C 1.38817 * 119.99990 * 179.97438 * 22 21 19 25 25 N 1.31614 * 119.99892 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99858 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47174 * 89.99644 * 26 24 22 28 28 H 1.48494 * 109.46800 * 209.99692 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99394 * 26 24 22 30 30 C 1.54270 * 110.03237 * 184.99531 * 15 14 13 31 31 H 1.09000 * 109.47118 * 270.17510 * 1 2 3 32 32 H 1.09006 * 109.47048 * 30.17365 * 1 2 3 33 33 H 1.09005 * 109.47073 * 150.17051 * 1 2 3 34 34 H 1.09003 * 115.54861 * 154.37759 * 5 4 3 35 35 H 1.09000 * 117.50033 * 359.97438 * 6 5 4 36 36 H 1.09004 * 117.49661 * 145.02117 * 6 5 4 37 37 H 1.09002 * 117.49663 * 214.97628 * 7 5 4 38 38 H 1.08990 * 117.49709 * 359.97438 * 7 5 4 39 39 H 1.08999 * 109.46502 * 330.01847 * 10 9 8 40 40 H 1.08999 * 109.47081 * 210.02526 * 10 9 8 41 41 H 0.97004 * 119.99857 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.47260 * 59.99379 * 14 13 11 43 43 H 1.08999 * 109.47225 * 299.99578 * 14 13 11 44 44 H 1.08994 * 110.03346 * 238.57245 * 17 15 14 45 45 H 1.09005 * 110.02974 * 359.94800 * 17 15 14 46 46 H 1.08998 * 110.48796 * 264.93589 * 18 17 15 47 47 H 1.08998 * 110.48646 * 142.28496 * 18 17 15 48 48 H 0.96999 * 119.99984 * 88.33030 * 21 19 18 49 49 H 0.97005 * 119.99715 * 180.02562 * 25 24 22 50 50 H 1.09002 * 110.48043 * 98.42991 * 30 15 14 51 51 H 1.09002 * 110.60152 * 335.84626 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6765 -0.0056 5 6 4.7776 1.5288 -0.0124 6 6 4.6025 3.0348 0.1927 7 6 4.9701 2.4878 -1.1890 8 7 3.5096 -0.6557 -0.0037 9 6 2.2707 -1.0761 0.0027 10 6 1.8246 -2.5156 0.0073 11 6 1.6818 -2.9926 1.4297 12 8 1.9194 -2.2382 2.3491 13 7 1.2911 -4.2580 1.6800 14 6 1.1517 -4.7217 3.0626 15 6 0.6990 -6.1831 3.0673 16 1 -0.2009 -6.2976 2.4631 17 6 1.8198 -7.0839 2.5196 18 6 2.1903 -8.0643 3.6516 19 6 0.9225 -8.1149 4.5401 20 1 0.1745 -8.7829 4.1131 21 7 1.2615 -8.5234 5.9056 22 6 1.2224 -9.8472 6.2537 23 1 0.9375 -10.5897 5.5230 24 6 1.5441 -10.2344 7.5474 25 7 1.5061 -11.5067 7.8822 26 14 2.0296 -8.9495 8.8135 27 1 0.8164 -8.4713 9.5238 28 1 2.9716 -9.5499 9.7918 29 1 2.6868 -7.8059 8.1311 30 6 0.4274 -6.6476 4.5131 31 1 -0.3633 0.0031 1.0277 32 1 -0.3633 0.8885 -0.5166 33 1 -0.3633 -0.8915 -0.5112 34 1 5.6689 1.0637 0.4089 35 1 3.5883 3.4092 0.3321 36 1 5.3788 3.5607 0.7486 37 1 5.9881 2.6540 -1.5414 38 1 4.1982 2.5020 -1.9582 39 1 2.5651 -3.1270 -0.5085 40 1 0.8649 -2.6002 -0.5024 41 1 1.1015 -4.8615 0.9446 42 1 0.4108 -4.1104 3.5779 43 1 2.1112 -4.6366 3.5729 44 1 1.4640 -7.6355 1.6495 45 1 2.6860 -6.4797 2.2496 46 1 3.0399 -7.6867 4.2205 47 1 2.4105 -9.0512 3.2447 48 1 1.5136 -7.8562 6.5630 49 1 1.7305 -11.7772 8.7863 50 1 -0.6388 -6.6006 4.7349 51 1 0.9908 -6.0417 5.2228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691272110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:07 Heat of formation + Delta-G solvation = 54.445014 kcal Electronic energy + Delta-G solvation = -29439.370186 eV Core-core repulsion = 25375.177070 eV Total energy + Delta-G solvation = -4064.193116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.26290 -40.86106 -39.46610 -38.18606 -36.43451 -35.03062 -34.91123 -33.74650 -32.97586 -30.82441 -29.73477 -28.91084 -28.16437 -25.68297 -24.76482 -24.47589 -23.32541 -22.47377 -21.61152 -21.17335 -20.87245 -20.45995 -19.56677 -18.36935 -18.07369 -17.40123 -16.88014 -16.77424 -16.66490 -16.33833 -16.24333 -15.92763 -15.61555 -14.95638 -14.73557 -14.64489 -14.53531 -14.33000 -14.17817 -14.15974 -14.04587 -13.41586 -13.14364 -13.11889 -13.08593 -12.70460 -12.68104 -12.42208 -12.33352 -12.12074 -11.94911 -11.89752 -11.84561 -11.69915 -11.50928 -11.49513 -11.24687 -11.14434 -11.06236 -10.94216 -10.73882 -10.19725 -10.11526 -9.27355 -8.02697 -5.34558 0.44992 1.30725 1.36946 1.38911 1.46199 1.54571 1.61744 2.22471 2.47456 2.79750 2.96811 3.28339 3.35223 3.47213 3.55883 3.68226 3.79625 3.86757 3.88709 4.01242 4.05188 4.17235 4.21602 4.27938 4.39379 4.43361 4.48162 4.58149 4.61766 4.63554 4.66510 4.72331 4.75781 4.81128 4.88157 4.92628 5.08307 5.09153 5.14166 5.20730 5.23839 5.27550 5.34615 5.35787 5.46595 5.56701 5.58704 5.78859 5.78971 6.22943 6.52607 7.03780 7.08836 7.21491 7.87681 8.04365 9.18905 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019747 B = 0.001665 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.584997 B =16812.252942 C =17387.737645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.376 5.376 3 N -0.342 5.342 4 C 0.240 3.760 5 C -0.098 4.098 6 C -0.154 4.154 7 C -0.140 4.140 8 N -0.564 5.564 9 C 0.292 3.708 10 C -0.059 4.059 11 C 0.517 3.483 12 O -0.587 6.587 13 N -0.704 5.704 14 C 0.134 3.866 15 C -0.082 4.082 16 H 0.110 0.890 17 C -0.109 4.109 18 C -0.143 4.143 19 C 0.166 3.834 20 H 0.057 0.943 21 N -0.751 5.751 22 C -0.227 4.227 23 H 0.059 0.941 24 C -0.065 4.065 25 N -0.984 5.984 26 Si 0.952 3.048 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.257 1.257 30 C -0.121 4.121 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.423 0.577 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.363 0.637 49 H 0.257 0.743 50 H 0.076 0.924 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 27.392 -25.996 37.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.166 5.166 3 N -0.171 5.171 4 C -0.041 4.041 5 C -0.119 4.119 6 C -0.192 4.192 7 C -0.179 4.179 8 N -0.293 5.293 9 C 0.015 3.985 10 C -0.100 4.100 11 C 0.303 3.697 12 O -0.467 6.467 13 N -0.357 5.357 14 C 0.010 3.990 15 C -0.102 4.102 16 H 0.128 0.872 17 C -0.147 4.147 18 C -0.183 4.183 19 C 0.058 3.942 20 H 0.075 0.925 21 N -0.393 5.393 22 C -0.359 4.359 23 H 0.077 0.923 24 C -0.256 4.256 25 N -0.635 5.635 26 Si 0.779 3.221 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.181 1.181 30 C -0.160 4.160 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.107 0.893 39 H 0.174 0.826 40 H 0.185 0.815 41 H 0.261 0.739 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.196 0.804 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.995 28.228 -25.367 38.004 hybrid contribution 0.220 -0.423 1.394 1.473 sum -1.775 27.805 -23.973 36.756 Atomic orbital electron populations 1.22375 0.71399 1.07227 1.04670 1.50360 1.09147 1.03162 1.53900 1.77830 1.01727 1.08974 1.28568 1.23565 0.93297 0.89492 0.97786 1.20251 0.92797 0.90675 1.08143 1.23087 1.03770 0.92298 1.00008 1.23093 1.04246 0.99609 0.90936 1.70187 1.21242 1.11520 1.26313 1.23939 0.85814 0.92958 0.95748 1.20399 1.08291 0.86140 0.95183 1.20576 0.76096 0.82131 0.90918 1.90788 1.51355 1.56310 1.48198 1.45735 1.68278 1.12136 1.09529 1.21340 1.00523 0.94438 0.82710 1.21831 0.99899 0.92069 0.96361 0.87207 1.22158 0.98128 0.96717 0.97662 1.22909 0.98975 0.98836 0.97617 1.21479 0.94693 0.94474 0.83578 0.92453 1.42808 1.82939 1.03842 1.09731 1.19087 1.36733 0.84541 0.95489 0.92281 1.25459 1.02909 0.97715 0.99523 1.69875 1.57596 1.16313 1.19693 0.85459 0.78028 0.79331 0.79239 1.20394 1.22460 1.18141 1.22558 1.01551 0.95154 0.96719 0.90423 0.87867 0.85117 0.85032 0.89207 0.85821 0.85372 0.89316 0.82610 0.81490 0.73896 0.91886 0.93497 0.89392 0.91209 0.93834 0.93539 0.80394 0.93460 0.90538 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 11.33 127.77 1.45 2.19 16 2 N -0.38 -7.35 4.04 -359.85 -1.45 -8.80 16 3 N -0.34 -8.56 12.24 -51.33 -0.63 -9.19 16 4 C 0.24 6.14 7.69 138.63 1.07 7.20 16 5 C -0.10 -1.88 6.33 -11.54 -0.07 -1.95 16 6 C -0.15 -2.24 10.14 30.62 0.31 -1.93 16 7 C -0.14 -1.85 10.24 30.62 0.31 -1.54 16 8 N -0.56 -14.93 11.19 -179.72 -2.01 -16.94 16 9 C 0.29 5.89 6.48 138.23 0.90 6.78 16 10 C -0.06 -0.56 6.03 29.10 0.18 -0.38 16 11 C 0.52 8.81 7.82 87.66 0.69 9.50 16 12 O -0.59 -17.30 16.03 -3.03 -0.05 -17.34 16 13 N -0.70 -8.43 5.34 -463.08 -2.47 -10.91 16 14 C 0.13 2.41 4.69 86.38 0.40 2.82 16 15 C -0.08 -1.42 2.96 -10.07 -0.03 -1.45 16 16 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 17 C -0.11 -2.08 6.19 31.32 0.19 -1.88 16 18 C -0.14 -4.41 6.51 31.67 0.21 -4.20 16 19 C 0.17 5.80 3.56 46.28 0.16 5.97 16 20 H 0.06 2.09 8.09 -2.39 -0.02 2.07 16 21 N -0.75 -34.54 5.03 -316.85 -1.59 -36.14 16 22 C -0.23 -12.88 10.44 84.04 0.88 -12.01 16 23 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 24 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 25 N -0.98 -63.32 13.97 21.65 0.30 -63.02 16 26 Si 0.95 46.19 27.74 68.60 1.90 48.10 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 29 H -0.26 -11.43 6.52 99.48 0.65 -10.78 16 30 C -0.12 -3.12 5.98 31.67 0.19 -2.93 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.13 0.04 7.10 -2.38 -0.02 0.02 16 34 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.09 1.55 7.88 -2.39 -0.02 1.53 16 36 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.17 -0.17 7.12 -2.39 -0.02 -0.19 16 41 H 0.42 1.72 8.35 -92.71 -0.77 0.94 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.25 7.61 -2.38 -0.02 1.23 16 46 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.36 16.30 5.62 -92.71 -0.52 15.78 16 49 H 0.26 15.78 8.31 -92.70 -0.77 15.01 16 50 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 51 H 0.06 1.63 7.73 -2.39 -0.02 1.61 16 Total: -1.00 -90.03 418.05 0.88 -89.15 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.41 Total: 22.29 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 7.29 Total: 2.81 kcal Atomic # 7 Polarization: -137.14 SS G_CDS: -7.86 Total: -145.00 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.10 kcal Total: -90.03 0.88 -89.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691272110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.590 kcal (2) G-P(sol) polarization free energy of solvation -90.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds