Wall clock time and date at job start Wed Apr 1 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47845 * 111.00014 * 2 1 4 4 C 1.54912 * 104.79652 * 146.36182 * 3 2 1 5 5 C 1.55138 * 101.65196 * 322.92541 * 4 3 2 6 6 C 1.47445 * 110.99738 * 120.83665 * 2 1 3 7 7 H 1.09005 * 109.88794 * 117.17246 * 6 2 1 8 8 C 1.50707 * 109.88709 * 356.15280 * 6 2 1 9 9 C 1.35362 * 126.38608 * 117.48149 * 8 6 2 10 10 C 1.41505 * 105.50261 * 180.25778 * 9 8 6 11 11 C 1.47710 * 126.51934 * 179.76427 * 10 9 8 12 12 O 1.21575 * 119.99961 * 359.97179 * 11 10 9 13 13 N 1.34777 * 119.99831 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99723 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47316 * 179.97438 * 14 13 11 16 16 H 1.09009 * 109.47081 * 64.99579 * 15 14 13 17 17 N 1.46506 * 109.47058 * 305.00177 * 15 14 13 18 18 C 1.36934 * 120.00021 * 154.99745 * 17 15 14 19 19 H 1.07997 * 119.99957 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99641 * 179.97438 * 18 17 15 21 21 N 1.31609 * 120.00422 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99535 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47298 * 90.00383 * 22 20 18 24 24 H 1.48509 * 109.46939 * 209.99916 * 22 20 18 25 25 H 1.48491 * 109.47240 * 329.99753 * 22 20 18 26 26 C 1.52999 * 109.47408 * 184.99607 * 15 14 13 27 27 C 1.52997 * 117.50040 * 248.62246 * 26 15 14 28 28 C 1.53001 * 60.00289 * 252.51046 * 27 26 15 29 29 N 1.31811 * 106.96322 * 359.76119 * 10 9 8 30 30 N 1.28470 * 110.07399 * 0.02562 * 29 10 9 31 31 H 0.96993 * 124.89106 * 179.97438 * 30 29 10 32 32 H 1.09001 * 109.47095 * 306.03355 * 1 2 3 33 33 H 1.09002 * 109.46931 * 66.02945 * 1 2 3 34 34 H 1.08994 * 109.47640 * 186.03201 * 1 2 3 35 35 H 1.08994 * 110.37252 * 265.18883 * 3 2 1 36 36 H 1.09001 * 110.37648 * 27.41737 * 3 2 1 37 37 H 1.08992 * 110.99013 * 81.01553 * 4 3 2 38 38 H 1.08999 * 110.98996 * 204.79868 * 4 3 2 39 39 H 1.08999 * 110.70693 * 277.27165 * 5 4 3 40 40 H 1.08997 * 110.70551 * 154.03333 * 5 4 3 41 41 H 1.07998 * 127.25100 * 0.02562 * 9 8 6 42 42 H 0.97002 * 120.00066 * 359.97438 * 13 11 10 43 43 H 1.09005 * 109.47593 * 299.99630 * 14 13 11 44 44 H 1.09003 * 109.47967 * 59.99946 * 14 13 11 45 45 H 0.96998 * 119.99430 * 334.99400 * 17 15 14 46 46 H 0.97007 * 120.00609 * 179.97438 * 21 20 18 47 47 H 1.08999 * 115.54761 * 34.33387 * 26 15 14 48 48 H 1.09000 * 117.50079 * 359.97438 * 27 26 15 49 49 H 1.08999 * 117.50173 * 145.02597 * 27 26 15 50 50 H 1.08997 * 117.50087 * 252.51474 * 28 27 26 51 51 H 1.09007 * 117.49873 * 107.48545 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8297 5 6 2.9158 0.2823 1.9316 6 6 1.9973 -0.7056 1.1819 7 1 2.5672 -1.5801 0.8677 8 6 0.8609 -1.1290 2.0767 9 6 0.5236 -2.3995 2.3996 10 6 -0.6012 -2.2875 3.2509 11 6 -1.3481 -3.4005 3.8716 12 8 -1.0086 -4.5497 3.6661 13 7 -2.4059 -3.1420 4.6657 14 6 -3.1463 -4.2458 5.2817 15 6 -4.2902 -3.6832 6.1279 16 1 -5.0083 -3.1804 5.4799 17 7 -3.7543 -2.7256 7.0985 18 6 -4.5578 -1.7364 7.5996 19 1 -5.5866 -1.6624 7.2795 20 6 -4.0502 -0.8294 8.5196 21 7 -2.7966 -0.9199 8.9101 22 14 -5.1465 0.5196 9.2037 23 1 -5.8240 0.0318 10.4318 24 1 -4.3206 1.7091 9.5332 25 1 -6.1661 0.8905 8.1899 26 6 -4.9859 -4.8263 6.8698 27 6 -6.4126 -5.1793 6.4449 28 6 -6.1651 -4.4662 7.7757 29 7 -0.8557 -1.0012 3.3846 30 7 -0.0094 -0.3115 2.7074 31 1 0.0008 0.6569 2.6538 32 1 -0.3633 0.6045 0.8311 33 1 -0.3633 0.4175 -0.9391 34 1 -0.3634 -1.0219 0.1080 35 1 2.2148 1.7038 -1.0182 36 1 1.2880 2.0596 0.4705 37 1 4.1301 0.9281 0.2244 38 1 3.5498 2.2722 1.2635 39 1 2.3743 0.7749 2.7392 40 1 3.7999 -0.2278 2.3139 41 1 1.0083 -3.3077 2.0730 42 1 -2.6766 -2.2251 4.8299 43 1 -3.5534 -4.8901 4.5024 44 1 -2.4752 -4.8238 5.9171 45 1 -2.8304 -2.7924 7.3863 46 1 -2.4417 -0.2858 9.5528 47 1 -4.3382 -5.6434 7.1875 48 1 -6.8559 -4.5969 5.6371 49 1 -6.7040 -6.2289 6.4830 50 1 -6.2934 -5.0467 8.6893 51 1 -6.4453 -3.4149 7.8432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713867010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:40 Heat of formation + Delta-G solvation = 91.956215 kcal Electronic energy + Delta-G solvation = -30708.980149 eV Core-core repulsion = 26646.413641 eV Total energy + Delta-G solvation = -4062.566508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.97856 -39.45910 -38.91226 -37.45160 -34.60189 -33.35740 -32.64487 -32.00304 -31.92452 -30.78359 -28.33888 -27.82318 -26.06923 -24.55244 -23.28104 -22.34242 -21.79435 -21.68010 -21.54903 -20.94449 -19.96338 -19.23599 -17.67174 -17.39402 -16.69006 -16.59463 -15.83771 -15.63907 -15.38555 -15.10298 -14.66493 -14.49645 -14.34285 -14.03935 -13.85193 -13.73856 -13.60049 -13.34405 -13.12951 -13.01003 -12.84274 -12.05086 -12.01030 -11.89493 -11.71788 -11.54844 -11.35564 -11.26307 -11.14032 -10.86026 -10.85173 -10.80972 -10.68557 -10.11573 -9.93475 -9.86370 -9.49258 -9.38287 -9.28019 -9.27177 -8.95751 -8.69983 -8.55100 -7.01801 -5.78809 -3.08023 1.65163 2.01668 2.71476 3.40094 3.45714 3.47092 3.54850 3.58350 3.71740 4.07656 4.19328 4.26457 4.43480 4.55339 4.61300 4.64533 4.90146 4.92208 5.03680 5.08039 5.15984 5.26237 5.36594 5.41824 5.44623 5.50723 5.54146 5.56285 5.57553 5.63353 5.64163 5.70382 5.78852 5.85934 5.93839 6.04164 6.09983 6.20335 6.33270 6.44239 6.45309 6.52157 6.56890 6.63251 6.79955 6.84360 6.95269 7.00583 7.67033 7.74588 8.08930 8.37628 8.60083 9.49957 10.04670 10.40798 11.42988 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.002627 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.865034 B =10657.374130 C =12289.500607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.034 3.966 4 C -0.129 4.129 5 C -0.139 4.139 6 C 0.142 3.858 7 H 0.115 0.885 8 C -0.005 4.005 9 C -0.163 4.163 10 C -0.005 4.005 11 C 0.598 3.402 12 O -0.547 6.547 13 N -0.697 5.697 14 C 0.118 3.882 15 C 0.193 3.807 16 H 0.055 0.945 17 N -0.716 5.716 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.928 5.928 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.282 1.282 26 C -0.158 4.158 27 C -0.196 4.196 28 C -0.156 4.156 29 N -0.240 5.240 30 N -0.380 5.380 31 H 0.440 0.560 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.162 0.838 42 H 0.417 0.583 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.386 0.614 46 H 0.254 0.746 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.231 2.445 -17.743 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.093 4.093 4 C -0.167 4.167 5 C -0.178 4.178 6 C 0.033 3.967 7 H 0.133 0.867 8 C -0.131 4.131 9 C -0.192 4.192 10 C -0.166 4.166 11 C 0.382 3.618 12 O -0.424 6.424 13 N -0.348 5.348 14 C -0.006 4.006 15 C 0.082 3.918 16 H 0.073 0.927 17 N -0.357 5.357 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.180 4.180 27 C -0.234 4.234 28 C -0.194 4.194 29 N -0.076 5.076 30 N -0.095 5.095 31 H 0.285 0.715 32 H 0.043 0.957 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.180 0.820 42 H 0.254 0.746 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.220 0.780 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.098 0.902 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.744 2.205 -17.758 19.916 hybrid contribution -0.242 1.548 1.211 1.980 sum 8.502 3.753 -16.547 18.978 Atomic orbital electron populations 1.22736 0.87123 1.02600 1.00775 1.63875 1.08487 1.14329 1.37893 1.23194 0.95733 0.89248 1.01134 1.22728 0.97774 0.99490 0.96747 1.22909 1.00176 0.96830 0.97916 1.21199 0.90661 0.98562 0.86314 0.86714 1.21570 0.97969 0.91113 1.02448 1.21505 0.98682 0.96833 1.02200 1.22027 0.99863 0.90738 1.04021 1.16865 0.79894 0.86389 0.78657 1.90758 1.68217 1.20555 1.62826 1.45847 1.29784 1.12041 1.47169 1.21650 0.94038 0.88746 0.96181 1.20057 0.92621 0.88999 0.90112 0.92691 1.42441 1.12510 1.31382 1.49335 1.19141 0.93849 1.04546 1.19067 0.91178 1.24703 0.96172 0.99580 1.00100 1.69662 1.13154 1.38790 1.35975 0.86276 0.79516 0.81825 0.79066 1.21779 1.21939 1.20813 1.23027 0.90099 1.00921 1.03977 1.22952 1.00717 1.00112 0.99624 1.22773 1.02348 1.01653 0.92590 1.73738 1.14692 1.04911 1.14231 1.43555 1.21646 1.09729 1.34605 0.71478 0.95714 0.91043 0.90456 0.89641 0.93540 0.90075 0.90396 0.91403 0.89532 0.81991 0.74585 0.91408 0.91569 0.78017 0.93582 0.89072 0.89550 0.90079 0.90228 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 8.30 60.06 0.50 0.64 16 2 N -0.52 -4.19 5.44 -232.94 -1.27 -5.46 16 3 C 0.03 0.22 6.73 -2.30 -0.02 0.20 16 4 C -0.13 -0.70 7.08 -24.59 -0.17 -0.88 16 5 C -0.14 -0.94 6.46 -24.91 -0.16 -1.10 16 6 C 0.14 1.16 3.90 -67.87 -0.26 0.89 16 7 H 0.12 0.89 8.13 -51.93 -0.42 0.47 16 8 C -0.01 -0.06 3.67 -82.20 -0.30 -0.36 16 9 C -0.16 -2.18 10.72 -39.36 -0.42 -2.60 16 10 C -0.01 -0.08 7.13 -82.76 -0.59 -0.67 16 11 C 0.60 10.97 7.82 -12.39 -0.10 10.88 16 12 O -0.55 -11.09 16.93 5.30 0.09 -11.00 16 13 N -0.70 -12.68 5.39 -61.29 -0.33 -13.01 16 14 C 0.12 2.09 5.21 -4.04 -0.02 2.07 16 15 C 0.19 3.67 2.70 -67.93 -0.18 3.48 16 16 H 0.06 1.06 7.84 -51.92 -0.41 0.66 16 17 N -0.72 -16.74 4.54 -53.42 -0.24 -16.98 16 18 C -0.24 -6.08 8.63 -15.06 -0.13 -6.21 16 19 H 0.07 1.77 6.91 -52.49 -0.36 1.41 16 20 C -0.01 -0.25 5.50 -17.44 -0.10 -0.35 16 21 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16 22 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.16 -2.80 5.36 -90.62 -0.49 -3.28 16 27 C -0.20 -3.01 10.18 -26.73 -0.27 -3.29 16 28 C -0.16 -2.80 9.78 -26.73 -0.26 -3.07 16 29 N -0.24 -3.65 11.92 33.42 0.40 -3.25 16 30 N -0.38 -4.33 5.13 33.50 0.17 -4.16 16 31 H 0.44 3.91 7.86 -190.45 -1.50 2.42 16 32 H 0.02 0.20 5.40 -51.93 -0.28 -0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.79 7.14 -51.93 -0.37 0.42 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.28 7.68 -51.93 -0.40 -0.12 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.50 7.58 -51.93 -0.39 0.10 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.42 7.98 7.86 -40.82 -0.32 7.66 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.39 9.93 7.80 -40.82 -0.32 9.61 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 47 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 48 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.10 2.10 6.23 -51.93 -0.32 1.77 16 LS Contribution 408.65 15.07 6.16 6.16 Total: -1.00 -30.95 408.65 -11.59 -42.55 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -9.30 Total: 18.47 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.98 Total: -3.64 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -0.55 Total: -69.31 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.95 -11.59 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713867010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.502 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds