Wall clock time and date at job start Wed Apr 1 2020 05:31:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46898 * 1
3 3 C 1.47845 * 111.00014 * 2 1
4 4 C 1.54912 * 104.79652 * 146.36182 * 3 2 1
5 5 C 1.55138 * 101.65196 * 322.92541 * 4 3 2
6 6 C 1.47445 * 110.99738 * 120.83665 * 2 1 3
7 7 H 1.09005 * 109.88794 * 117.17246 * 6 2 1
8 8 C 1.50707 * 109.88709 * 356.15280 * 6 2 1
9 9 C 1.35362 * 126.38608 * 117.48149 * 8 6 2
10 10 C 1.41505 * 105.50261 * 180.25778 * 9 8 6
11 11 C 1.47710 * 126.51934 * 179.76427 * 10 9 8
12 12 O 1.21575 * 119.99961 * 359.97179 * 11 10 9
13 13 N 1.34777 * 119.99831 * 179.97438 * 11 10 9
14 14 C 1.46494 * 119.99723 * 180.02562 * 13 11 10
15 15 C 1.53001 * 109.47316 * 179.97438 * 14 13 11
16 16 H 1.09009 * 109.47081 * 64.99579 * 15 14 13
17 17 N 1.46506 * 109.47058 * 305.00177 * 15 14 13
18 18 C 1.36934 * 120.00021 * 154.99745 * 17 15 14
19 19 H 1.07997 * 119.99957 * 0.02562 * 18 17 15
20 20 C 1.38810 * 119.99641 * 179.97438 * 18 17 15
21 21 N 1.31609 * 120.00422 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 119.99535 * 180.02562 * 20 18 17
23 23 H 1.48499 * 109.47298 * 90.00383 * 22 20 18
24 24 H 1.48509 * 109.46939 * 209.99916 * 22 20 18
25 25 H 1.48491 * 109.47240 * 329.99753 * 22 20 18
26 26 C 1.52999 * 109.47408 * 184.99607 * 15 14 13
27 27 C 1.52997 * 117.50040 * 248.62246 * 26 15 14
28 28 C 1.53001 * 60.00289 * 252.51046 * 27 26 15
29 29 N 1.31811 * 106.96322 * 359.76119 * 10 9 8
30 30 N 1.28470 * 110.07399 * 0.02562 * 29 10 9
31 31 H 0.96993 * 124.89106 * 179.97438 * 30 29 10
32 32 H 1.09001 * 109.47095 * 306.03355 * 1 2 3
33 33 H 1.09002 * 109.46931 * 66.02945 * 1 2 3
34 34 H 1.08994 * 109.47640 * 186.03201 * 1 2 3
35 35 H 1.08994 * 110.37252 * 265.18883 * 3 2 1
36 36 H 1.09001 * 110.37648 * 27.41737 * 3 2 1
37 37 H 1.08992 * 110.99013 * 81.01553 * 4 3 2
38 38 H 1.08999 * 110.98996 * 204.79868 * 4 3 2
39 39 H 1.08999 * 110.70693 * 277.27165 * 5 4 3
40 40 H 1.08997 * 110.70551 * 154.03333 * 5 4 3
41 41 H 1.07998 * 127.25100 * 0.02562 * 9 8 6
42 42 H 0.97002 * 120.00066 * 359.97438 * 13 11 10
43 43 H 1.09005 * 109.47593 * 299.99630 * 14 13 11
44 44 H 1.09003 * 109.47967 * 59.99946 * 14 13 11
45 45 H 0.96998 * 119.99430 * 334.99400 * 17 15 14
46 46 H 0.97007 * 120.00609 * 179.97438 * 21 20 18
47 47 H 1.08999 * 115.54761 * 34.33387 * 26 15 14
48 48 H 1.09000 * 117.50079 * 359.97438 * 27 26 15
49 49 H 1.08999 * 117.50173 * 145.02597 * 27 26 15
50 50 H 1.08997 * 117.50087 * 252.51474 * 28 27 26
51 51 H 1.09007 * 117.49873 * 107.48545 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3802 0.0000
4 6 3.3047 1.3027 0.8297
5 6 2.9158 0.2823 1.9316
6 6 1.9973 -0.7056 1.1819
7 1 2.5672 -1.5801 0.8677
8 6 0.8609 -1.1290 2.0767
9 6 0.5236 -2.3995 2.3996
10 6 -0.6012 -2.2875 3.2509
11 6 -1.3481 -3.4005 3.8716
12 8 -1.0086 -4.5497 3.6661
13 7 -2.4059 -3.1420 4.6657
14 6 -3.1463 -4.2458 5.2817
15 6 -4.2902 -3.6832 6.1279
16 1 -5.0083 -3.1804 5.4799
17 7 -3.7543 -2.7256 7.0985
18 6 -4.5578 -1.7364 7.5996
19 1 -5.5866 -1.6624 7.2795
20 6 -4.0502 -0.8294 8.5196
21 7 -2.7966 -0.9199 8.9101
22 14 -5.1465 0.5196 9.2037
23 1 -5.8240 0.0318 10.4318
24 1 -4.3206 1.7091 9.5332
25 1 -6.1661 0.8905 8.1899
26 6 -4.9859 -4.8263 6.8698
27 6 -6.4126 -5.1793 6.4449
28 6 -6.1651 -4.4662 7.7757
29 7 -0.8557 -1.0012 3.3846
30 7 -0.0094 -0.3115 2.7074
31 1 0.0008 0.6569 2.6538
32 1 -0.3633 0.6045 0.8311
33 1 -0.3633 0.4175 -0.9391
34 1 -0.3634 -1.0219 0.1080
35 1 2.2148 1.7038 -1.0182
36 1 1.2880 2.0596 0.4705
37 1 4.1301 0.9281 0.2244
38 1 3.5498 2.2722 1.2635
39 1 2.3743 0.7749 2.7392
40 1 3.7999 -0.2278 2.3139
41 1 1.0083 -3.3077 2.0730
42 1 -2.6766 -2.2251 4.8299
43 1 -3.5534 -4.8901 4.5024
44 1 -2.4752 -4.8238 5.9171
45 1 -2.8304 -2.7924 7.3863
46 1 -2.4417 -0.2858 9.5528
47 1 -4.3382 -5.6434 7.1875
48 1 -6.8559 -4.5969 5.6371
49 1 -6.7040 -6.2289 6.4830
50 1 -6.2934 -5.0467 8.6893
51 1 -6.4453 -3.4149 7.8432
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713867010.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:40
Heat of formation + Delta-G solvation = 91.956215 kcal
Electronic energy + Delta-G solvation = -30708.980149 eV
Core-core repulsion = 26646.413641 eV
Total energy + Delta-G solvation = -4062.566508 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.97856 -39.45910 -38.91226 -37.45160 -34.60189 -33.35740 -32.64487 -32.00304
-31.92452 -30.78359 -28.33888 -27.82318 -26.06923 -24.55244 -23.28104 -22.34242
-21.79435 -21.68010 -21.54903 -20.94449 -19.96338 -19.23599 -17.67174 -17.39402
-16.69006 -16.59463 -15.83771 -15.63907 -15.38555 -15.10298 -14.66493 -14.49645
-14.34285 -14.03935 -13.85193 -13.73856 -13.60049 -13.34405 -13.12951 -13.01003
-12.84274 -12.05086 -12.01030 -11.89493 -11.71788 -11.54844 -11.35564 -11.26307
-11.14032 -10.86026 -10.85173 -10.80972 -10.68557 -10.11573 -9.93475 -9.86370
-9.49258 -9.38287 -9.28019 -9.27177 -8.95751 -8.69983 -8.55100 -7.01801
-5.78809 -3.08023 1.65163 2.01668 2.71476 3.40094 3.45714 3.47092
3.54850 3.58350 3.71740 4.07656 4.19328 4.26457 4.43480 4.55339
4.61300 4.64533 4.90146 4.92208 5.03680 5.08039 5.15984 5.26237
5.36594 5.41824 5.44623 5.50723 5.54146 5.56285 5.57553 5.63353
5.64163 5.70382 5.78852 5.85934 5.93839 6.04164 6.09983 6.20335
6.33270 6.44239 6.45309 6.52157 6.56890 6.63251 6.79955 6.84360
6.95269 7.00583 7.67033 7.74588 8.08930 8.37628 8.60083 9.49957
10.04670 10.40798 11.42988
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.011606 B = 0.002627 C = 0.002278
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2411.865034 B =10657.374130 C =12289.500607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 N -0.522 5.522
3 C 0.034 3.966
4 C -0.129 4.129
5 C -0.139 4.139
6 C 0.142 3.858
7 H 0.115 0.885
8 C -0.005 4.005
9 C -0.163 4.163
10 C -0.005 4.005
11 C 0.598 3.402
12 O -0.547 6.547
13 N -0.697 5.697
14 C 0.118 3.882
15 C 0.193 3.807
16 H 0.055 0.945
17 N -0.716 5.716
18 C -0.235 4.235
19 H 0.070 0.930
20 C -0.009 4.009
21 N -0.928 5.928
22 Si 0.902 3.098
23 H -0.290 1.290
24 H -0.293 1.293
25 H -0.282 1.282
26 C -0.158 4.158
27 C -0.196 4.196
28 C -0.156 4.156
29 N -0.240 5.240
30 N -0.380 5.380
31 H 0.440 0.560
32 H 0.025 0.975
33 H 0.071 0.929
34 H 0.077 0.923
35 H 0.085 0.915
36 H 0.046 0.954
37 H 0.081 0.919
38 H 0.077 0.923
39 H 0.067 0.933
40 H 0.086 0.914
41 H 0.162 0.838
42 H 0.417 0.583
43 H 0.068 0.932
44 H 0.066 0.934
45 H 0.386 0.614
46 H 0.254 0.746
47 H 0.091 0.909
48 H 0.086 0.914
49 H 0.081 0.919
50 H 0.079 0.921
51 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.231 2.445 -17.743 20.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 N -0.246 5.246
3 C -0.093 4.093
4 C -0.167 4.167
5 C -0.178 4.178
6 C 0.033 3.967
7 H 0.133 0.867
8 C -0.131 4.131
9 C -0.192 4.192
10 C -0.166 4.166
11 C 0.382 3.618
12 O -0.424 6.424
13 N -0.348 5.348
14 C -0.006 4.006
15 C 0.082 3.918
16 H 0.073 0.927
17 N -0.357 5.357
18 C -0.366 4.366
19 H 0.088 0.912
20 C -0.206 4.206
21 N -0.576 5.576
22 Si 0.733 3.267
23 H -0.218 1.218
24 H -0.219 1.219
25 H -0.208 1.208
26 C -0.180 4.180
27 C -0.234 4.234
28 C -0.194 4.194
29 N -0.076 5.076
30 N -0.095 5.095
31 H 0.285 0.715
32 H 0.043 0.957
33 H 0.090 0.910
34 H 0.095 0.905
35 H 0.104 0.896
36 H 0.065 0.935
37 H 0.099 0.901
38 H 0.096 0.904
39 H 0.086 0.914
40 H 0.105 0.895
41 H 0.180 0.820
42 H 0.254 0.746
43 H 0.086 0.914
44 H 0.084 0.916
45 H 0.220 0.780
46 H 0.064 0.936
47 H 0.109 0.891
48 H 0.104 0.896
49 H 0.099 0.901
50 H 0.098 0.902
51 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 8.744 2.205 -17.758 19.916
hybrid contribution -0.242 1.548 1.211 1.980
sum 8.502 3.753 -16.547 18.978
Atomic orbital electron populations
1.22736 0.87123 1.02600 1.00775 1.63875 1.08487 1.14329 1.37893
1.23194 0.95733 0.89248 1.01134 1.22728 0.97774 0.99490 0.96747
1.22909 1.00176 0.96830 0.97916 1.21199 0.90661 0.98562 0.86314
0.86714 1.21570 0.97969 0.91113 1.02448 1.21505 0.98682 0.96833
1.02200 1.22027 0.99863 0.90738 1.04021 1.16865 0.79894 0.86389
0.78657 1.90758 1.68217 1.20555 1.62826 1.45847 1.29784 1.12041
1.47169 1.21650 0.94038 0.88746 0.96181 1.20057 0.92621 0.88999
0.90112 0.92691 1.42441 1.12510 1.31382 1.49335 1.19141 0.93849
1.04546 1.19067 0.91178 1.24703 0.96172 0.99580 1.00100 1.69662
1.13154 1.38790 1.35975 0.86276 0.79516 0.81825 0.79066 1.21779
1.21939 1.20813 1.23027 0.90099 1.00921 1.03977 1.22952 1.00717
1.00112 0.99624 1.22773 1.02348 1.01653 0.92590 1.73738 1.14692
1.04911 1.14231 1.43555 1.21646 1.09729 1.34605 0.71478 0.95714
0.91043 0.90456 0.89641 0.93540 0.90075 0.90396 0.91403 0.89532
0.81991 0.74585 0.91408 0.91569 0.78017 0.93582 0.89072 0.89550
0.90079 0.90228 0.87727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.14 8.30 60.06 0.50 0.64 16
2 N -0.52 -4.19 5.44 -232.94 -1.27 -5.46 16
3 C 0.03 0.22 6.73 -2.30 -0.02 0.20 16
4 C -0.13 -0.70 7.08 -24.59 -0.17 -0.88 16
5 C -0.14 -0.94 6.46 -24.91 -0.16 -1.10 16
6 C 0.14 1.16 3.90 -67.87 -0.26 0.89 16
7 H 0.12 0.89 8.13 -51.93 -0.42 0.47 16
8 C -0.01 -0.06 3.67 -82.20 -0.30 -0.36 16
9 C -0.16 -2.18 10.72 -39.36 -0.42 -2.60 16
10 C -0.01 -0.08 7.13 -82.76 -0.59 -0.67 16
11 C 0.60 10.97 7.82 -12.39 -0.10 10.88 16
12 O -0.55 -11.09 16.93 5.30 0.09 -11.00 16
13 N -0.70 -12.68 5.39 -61.29 -0.33 -13.01 16
14 C 0.12 2.09 5.21 -4.04 -0.02 2.07 16
15 C 0.19 3.67 2.70 -67.93 -0.18 3.48 16
16 H 0.06 1.06 7.84 -51.92 -0.41 0.66 16
17 N -0.72 -16.74 4.54 -53.42 -0.24 -16.98 16
18 C -0.24 -6.08 8.63 -15.06 -0.13 -6.21 16
19 H 0.07 1.77 6.91 -52.49 -0.36 1.41 16
20 C -0.01 -0.25 5.50 -17.44 -0.10 -0.35 16
21 N -0.93 -27.17 13.06 55.49 0.72 -26.44 16
22 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16
23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
26 C -0.16 -2.80 5.36 -90.62 -0.49 -3.28 16
27 C -0.20 -3.01 10.18 -26.73 -0.27 -3.29 16
28 C -0.16 -2.80 9.78 -26.73 -0.26 -3.07 16
29 N -0.24 -3.65 11.92 33.42 0.40 -3.25 16
30 N -0.38 -4.33 5.13 33.50 0.17 -4.16 16
31 H 0.44 3.91 7.86 -190.45 -1.50 2.42 16
32 H 0.02 0.20 5.40 -51.93 -0.28 -0.08 16
33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
34 H 0.08 0.79 7.14 -51.93 -0.37 0.42 16
35 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16
36 H 0.05 0.28 7.68 -51.93 -0.40 -0.12 16
37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16
39 H 0.07 0.50 7.58 -51.93 -0.39 0.10 16
40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16
41 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16
42 H 0.42 7.98 7.86 -40.82 -0.32 7.66 16
43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
45 H 0.39 9.93 7.80 -40.82 -0.32 9.61 16
46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16
47 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16
48 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16
49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
50 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16
51 H 0.10 2.10 6.23 -51.93 -0.32 1.77 16
LS Contribution 408.65 15.07 6.16 6.16
Total: -1.00 -30.95 408.65 -11.59 -42.55
By element:
Atomic # 1 Polarization: 27.77 SS G_CDS: -9.30 Total: 18.47 kcal
Atomic # 6 Polarization: -0.66 SS G_CDS: -2.98 Total: -3.64 kcal
Atomic # 7 Polarization: -68.76 SS G_CDS: -0.55 Total: -69.31 kcal
Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -30.95 -11.59 -42.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713867010.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 134.502 kcal
(2) G-P(sol) polarization free energy of solvation -30.952 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.550 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.594 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal
(6) G-S(sol) free energy of system = (1) + (5) 91.956 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds