Wall clock time and date at job start Wed Apr 1 2020 05:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47845 * 111.00014 * 2 1 4 4 C 1.54912 * 104.79652 * 146.36182 * 3 2 1 5 5 C 1.55138 * 101.65196 * 322.92541 * 4 3 2 6 6 C 1.47445 * 110.99738 * 120.83665 * 2 1 3 7 7 H 1.09005 * 109.88794 * 117.17246 * 6 2 1 8 8 C 1.50707 * 109.88709 * 356.15280 * 6 2 1 9 9 C 1.35362 * 126.38608 * 117.48149 * 8 6 2 10 10 C 1.41505 * 105.50261 * 180.25778 * 9 8 6 11 11 C 1.47710 * 126.51934 * 179.76427 * 10 9 8 12 12 O 1.21575 * 119.99961 * 359.97179 * 11 10 9 13 13 N 1.34777 * 119.99831 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99723 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47316 * 179.97438 * 14 13 11 16 16 H 1.09009 * 109.47081 * 64.99579 * 15 14 13 17 17 N 1.46506 * 109.47058 * 305.00177 * 15 14 13 18 18 C 1.36934 * 120.00021 * 154.99745 * 17 15 14 19 19 H 1.07997 * 119.99957 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99641 * 179.97438 * 18 17 15 21 21 N 1.31609 * 120.00422 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99535 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47298 * 90.00383 * 22 20 18 24 24 H 1.48509 * 109.46939 * 209.99916 * 22 20 18 25 25 H 1.48491 * 109.47240 * 329.99753 * 22 20 18 26 26 C 1.52999 * 109.47408 * 184.99607 * 15 14 13 27 27 C 1.52997 * 117.50040 * 248.62246 * 26 15 14 28 28 C 1.53001 * 60.00289 * 252.51046 * 27 26 15 29 29 N 1.31811 * 106.96322 * 359.76119 * 10 9 8 30 30 N 1.28470 * 110.07399 * 0.02562 * 29 10 9 31 31 H 0.96993 * 124.89106 * 179.97438 * 30 29 10 32 32 H 1.09001 * 109.47095 * 306.03355 * 1 2 3 33 33 H 1.09002 * 109.46931 * 66.02945 * 1 2 3 34 34 H 1.08994 * 109.47640 * 186.03201 * 1 2 3 35 35 H 1.08994 * 110.37252 * 265.18883 * 3 2 1 36 36 H 1.09001 * 110.37648 * 27.41737 * 3 2 1 37 37 H 1.08992 * 110.99013 * 81.01553 * 4 3 2 38 38 H 1.08999 * 110.98996 * 204.79868 * 4 3 2 39 39 H 1.08999 * 110.70693 * 277.27165 * 5 4 3 40 40 H 1.08997 * 110.70551 * 154.03333 * 5 4 3 41 41 H 1.07998 * 127.25100 * 0.02562 * 9 8 6 42 42 H 0.97002 * 120.00066 * 359.97438 * 13 11 10 43 43 H 1.09005 * 109.47593 * 299.99630 * 14 13 11 44 44 H 1.09003 * 109.47967 * 59.99946 * 14 13 11 45 45 H 0.96998 * 119.99430 * 334.99400 * 17 15 14 46 46 H 0.97007 * 120.00609 * 179.97438 * 21 20 18 47 47 H 1.08999 * 115.54761 * 34.33387 * 26 15 14 48 48 H 1.09000 * 117.50079 * 359.97438 * 27 26 15 49 49 H 1.08999 * 117.50173 * 145.02597 * 27 26 15 50 50 H 1.08997 * 117.50087 * 252.51474 * 28 27 26 51 51 H 1.09007 * 117.49873 * 107.48545 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 0.8297 5 6 2.9158 0.2823 1.9316 6 6 1.9973 -0.7056 1.1819 7 1 2.5672 -1.5801 0.8677 8 6 0.8609 -1.1290 2.0767 9 6 0.5236 -2.3995 2.3996 10 6 -0.6012 -2.2875 3.2509 11 6 -1.3481 -3.4005 3.8716 12 8 -1.0086 -4.5497 3.6661 13 7 -2.4059 -3.1420 4.6657 14 6 -3.1463 -4.2458 5.2817 15 6 -4.2902 -3.6832 6.1279 16 1 -5.0083 -3.1804 5.4799 17 7 -3.7543 -2.7256 7.0985 18 6 -4.5578 -1.7364 7.5996 19 1 -5.5866 -1.6624 7.2795 20 6 -4.0502 -0.8294 8.5196 21 7 -2.7966 -0.9199 8.9101 22 14 -5.1465 0.5196 9.2037 23 1 -5.8240 0.0318 10.4318 24 1 -4.3206 1.7091 9.5332 25 1 -6.1661 0.8905 8.1899 26 6 -4.9859 -4.8263 6.8698 27 6 -6.4126 -5.1793 6.4449 28 6 -6.1651 -4.4662 7.7757 29 7 -0.8557 -1.0012 3.3846 30 7 -0.0094 -0.3115 2.7074 31 1 0.0008 0.6569 2.6538 32 1 -0.3633 0.6045 0.8311 33 1 -0.3633 0.4175 -0.9391 34 1 -0.3634 -1.0219 0.1080 35 1 2.2148 1.7038 -1.0182 36 1 1.2880 2.0596 0.4705 37 1 4.1301 0.9281 0.2244 38 1 3.5498 2.2722 1.2635 39 1 2.3743 0.7749 2.7392 40 1 3.7999 -0.2278 2.3139 41 1 1.0083 -3.3077 2.0730 42 1 -2.6766 -2.2251 4.8299 43 1 -3.5534 -4.8901 4.5024 44 1 -2.4752 -4.8238 5.9171 45 1 -2.8304 -2.7924 7.3863 46 1 -2.4417 -0.2858 9.5528 47 1 -4.3382 -5.6434 7.1875 48 1 -6.8559 -4.5969 5.6371 49 1 -6.7040 -6.2289 6.4830 50 1 -6.2934 -5.0467 8.6893 51 1 -6.4453 -3.4149 7.8432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713867010.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:39 Heat of formation + Delta-G solvation = 69.699282 kcal Electronic energy + Delta-G solvation = -30709.945282 eV Core-core repulsion = 26646.413641 eV Total energy + Delta-G solvation = -4063.531641 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.01024 -40.61017 -39.87924 -38.95510 -36.10862 -35.16869 -33.39172 -33.02065 -32.87839 -32.44968 -29.80475 -28.80106 -26.74002 -26.06756 -25.00613 -23.48317 -23.01431 -22.81505 -22.18643 -21.84581 -21.41278 -20.64725 -19.24058 -18.57701 -17.99635 -17.32291 -17.07768 -16.79533 -16.68590 -16.30905 -16.01682 -15.99204 -15.40620 -15.29120 -15.07700 -14.88411 -14.77695 -14.56952 -14.31485 -14.19537 -13.68642 -13.58720 -12.99134 -12.91201 -12.71436 -12.67005 -12.52607 -12.43017 -12.30027 -12.25274 -12.06921 -12.00364 -11.96557 -11.73072 -11.65164 -11.35635 -11.00008 -10.88719 -10.75826 -10.51508 -10.21844 -10.00527 -9.40097 -8.99338 -7.88062 -5.15602 0.47057 0.97434 1.47690 1.48737 1.55852 1.74466 2.22633 2.35559 2.57521 2.97326 3.08842 3.27889 3.41917 3.49049 3.59360 3.72244 3.78964 4.00225 4.07121 4.12600 4.20106 4.28496 4.34548 4.35659 4.39039 4.40485 4.47017 4.55332 4.58010 4.63204 4.68379 4.85595 4.87936 4.90863 4.91486 4.96295 5.03882 5.13045 5.15481 5.16972 5.24703 5.27453 5.41714 5.45335 5.50521 5.61660 5.82028 5.87399 5.98289 6.30923 6.45642 6.80311 7.14862 7.39126 8.10367 8.35972 9.34820 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011606 B = 0.002627 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.865034 B =10657.374130 C =12289.500607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.526 5.526 3 C 0.031 3.969 4 C -0.121 4.121 5 C -0.139 4.139 6 C 0.142 3.858 7 H 0.122 0.878 8 C 0.022 3.978 9 C -0.180 4.180 10 C -0.031 4.031 11 C 0.596 3.404 12 O -0.572 6.572 13 N -0.699 5.699 14 C 0.126 3.874 15 C 0.197 3.803 16 H 0.056 0.944 17 N -0.723 5.723 18 C -0.216 4.216 19 H 0.077 0.923 20 C -0.071 4.071 21 N -0.967 5.967 22 Si 0.960 3.040 23 H -0.293 1.293 24 H -0.302 1.302 25 H -0.270 1.270 26 C -0.173 4.173 27 C -0.161 4.161 28 C -0.174 4.174 29 N -0.264 5.264 30 N -0.364 5.364 31 H 0.452 0.548 32 H 0.025 0.975 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.412 0.588 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.372 0.628 46 H 0.246 0.754 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.087 0.913 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.133 2.918 -19.421 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.250 5.250 3 C -0.096 4.096 4 C -0.159 4.159 5 C -0.178 4.178 6 C 0.033 3.967 7 H 0.140 0.860 8 C -0.104 4.104 9 C -0.208 4.208 10 C -0.191 4.191 11 C 0.382 3.618 12 O -0.451 6.451 13 N -0.349 5.349 14 C 0.002 3.998 15 C 0.088 3.912 16 H 0.074 0.926 17 N -0.362 5.362 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.263 4.263 21 N -0.618 5.618 22 Si 0.791 3.209 23 H -0.221 1.221 24 H -0.229 1.229 25 H -0.195 1.195 26 C -0.194 4.194 27 C -0.198 4.198 28 C -0.212 4.212 29 N -0.101 5.101 30 N -0.081 5.081 31 H 0.299 0.701 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.187 0.813 42 H 0.248 0.752 43 H 0.103 0.897 44 H 0.074 0.926 45 H 0.204 0.796 46 H 0.055 0.945 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.126 0.874 50 H 0.105 0.895 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.598 2.666 -19.471 21.451 hybrid contribution -0.212 1.385 1.612 2.136 sum 8.386 4.051 -17.859 20.142 Atomic orbital electron populations 1.22691 0.87628 1.01369 1.01391 1.63926 1.08027 1.15645 1.37404 1.23299 0.96180 0.88165 1.01969 1.22716 0.97459 0.99679 0.96046 1.22922 0.99998 0.96810 0.98049 1.21371 0.89777 0.99455 0.86098 0.85993 1.21906 0.97481 0.90050 1.01006 1.21673 0.98409 0.98257 1.02487 1.21847 1.01104 0.90600 1.05560 1.17170 0.79661 0.86763 0.78253 1.90724 1.68877 1.21661 1.63807 1.45865 1.30017 1.11748 1.47223 1.21591 0.93336 0.88673 0.96246 1.20154 0.92973 0.88755 0.89328 0.92649 1.42550 1.11711 1.32059 1.49919 1.19441 0.93991 1.03992 1.17394 0.90563 1.25369 0.97282 1.02156 1.01533 1.69817 1.14856 1.39849 1.37267 0.85332 0.78027 0.79150 0.78417 1.22056 1.22887 1.19470 1.22900 0.91199 1.00618 1.04681 1.23026 0.97649 1.01420 0.97750 1.22733 1.03185 1.00835 0.94409 1.73660 1.16105 1.04863 1.15488 1.43592 1.20809 1.10307 1.33419 0.70052 0.95670 0.90038 0.92441 0.88771 0.93099 0.89361 0.89121 0.91980 0.88725 0.81329 0.75175 0.89651 0.92553 0.79631 0.94493 0.88583 0.88671 0.87358 0.89489 0.90158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.30 127.69 1.06 1.34 16 2 N -0.53 -7.45 5.44 -890.89 -4.85 -12.30 16 3 C 0.03 0.31 6.73 86.77 0.58 0.89 16 4 C -0.12 -0.97 7.08 31.98 0.23 -0.75 16 5 C -0.14 -1.57 6.46 31.77 0.21 -1.36 16 6 C 0.14 2.08 3.90 44.51 0.17 2.25 16 7 H 0.12 1.67 8.13 -2.38 -0.02 1.65 16 8 C 0.02 0.46 3.67 41.40 0.15 0.62 16 9 C -0.18 -4.80 10.72 22.41 0.24 -4.56 16 10 C -0.03 -1.03 7.13 42.46 0.30 -0.73 16 11 C 0.60 22.45 7.82 86.75 0.68 23.13 16 12 O -0.57 -23.69 16.93 -3.95 -0.07 -23.75 16 13 N -0.70 -25.97 5.39 -466.10 -2.51 -28.48 16 14 C 0.13 4.45 5.21 86.38 0.45 4.90 16 15 C 0.20 7.42 2.70 44.99 0.12 7.54 16 16 H 0.06 2.10 7.84 -2.38 -0.02 2.08 16 17 N -0.72 -34.27 4.54 -322.92 -1.47 -35.73 16 18 C -0.22 -11.24 8.63 84.03 0.72 -10.52 16 19 H 0.08 3.82 6.91 -2.91 -0.02 3.80 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 21 N -0.97 -58.06 13.06 21.65 0.28 -57.78 16 22 Si 0.96 45.36 29.55 68.60 2.03 47.39 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 C -0.17 -5.88 5.36 -10.79 -0.06 -5.94 16 27 C -0.16 -4.49 10.18 30.59 0.31 -4.18 16 28 C -0.17 -6.03 9.78 30.60 0.30 -5.73 16 29 N -0.26 -8.14 11.92 -48.17 -0.57 -8.72 16 30 N -0.36 -8.12 5.13 -47.92 -0.25 -8.36 16 31 H 0.45 7.58 7.86 -220.00 -1.73 5.85 16 32 H 0.02 0.38 5.40 -2.39 -0.01 0.37 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.15 7.14 -2.39 -0.02 1.13 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.05 0.48 7.68 -2.39 -0.02 0.46 16 37 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.06 0.79 7.58 -2.39 -0.02 0.77 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.17 4.15 8.06 -2.91 -0.02 4.12 16 42 H 0.41 16.21 7.86 -92.71 -0.73 15.48 16 43 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.37 19.69 7.80 -92.71 -0.72 18.97 16 46 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 47 H 0.10 3.19 8.11 -2.39 -0.02 3.17 16 48 H 0.09 2.52 8.05 -2.39 -0.02 2.50 16 49 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 50 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 51 H 0.08 3.18 6.23 -2.38 -0.01 3.16 16 Total: -1.00 -67.51 408.65 -3.67 -71.18 By element: Atomic # 1 Polarization: 55.33 SS G_CDS: -2.21 Total: 53.13 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 5.94 Total: 3.44 kcal Atomic # 7 Polarization: -142.01 SS G_CDS: -9.36 Total: -151.38 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.07 Total: -23.75 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -67.51 -3.67 -71.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713867010.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.880 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds