Wall clock time and date at job start Wed Apr 1 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40452 * 126.81870 * 2 1 4 4 C 1.30712 * 106.78556 * 180.25589 * 3 2 1 5 5 C 1.50704 * 125.52130 * 179.78797 * 4 3 2 6 6 C 1.52995 * 117.50276 * 8.70445 * 5 4 3 7 7 C 1.52996 * 117.49703 * 300.03998 * 5 4 3 8 8 N 1.33238 * 108.95102 * 359.74930 * 4 3 2 9 9 C 1.30829 * 109.82869 * 359.97438 * 8 4 3 10 10 C 1.50705 * 125.96348 * 180.02562 * 9 8 4 11 11 C 1.50698 * 109.47201 * 90.02775 * 10 9 8 12 12 O 1.21278 * 119.99987 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99730 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99863 * 179.97438 * 13 11 10 15 15 H 1.09007 * 110.42957 * 32.46283 * 14 13 11 16 16 C 1.55238 * 110.46889 * 269.81156 * 14 13 11 17 17 C 1.54894 * 102.58338 * 203.39139 * 16 14 13 18 18 C 1.54266 * 104.31305 * 37.93170 * 17 16 14 19 19 C 1.53869 * 106.60031 * 336.32486 * 18 17 16 20 20 H 1.08999 * 110.04012 * 119.28327 * 19 18 17 21 21 C 1.53007 * 110.03216 * 240.71686 * 19 18 17 22 22 N 1.46498 * 109.46762 * 293.54374 * 21 19 18 23 23 C 1.36934 * 120.00199 * 179.97438 * 22 21 19 24 24 H 1.08005 * 120.00110 * 359.97438 * 23 22 21 25 25 C 1.38815 * 120.00397 * 179.97438 * 23 22 21 26 26 N 1.31614 * 120.00006 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99963 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46903 * 90.00163 * 27 25 23 29 29 H 1.48499 * 109.46808 * 210.00095 * 27 25 23 30 30 H 1.48500 * 109.47298 * 330.00101 * 27 25 23 31 31 H 1.08991 * 109.47472 * 270.17665 * 1 2 3 32 32 H 1.09005 * 109.46833 * 30.17837 * 1 2 3 33 33 H 1.08995 * 109.46753 * 150.17284 * 1 2 3 34 34 H 1.09000 * 115.54716 * 154.37761 * 5 4 3 35 35 H 1.09003 * 117.49711 * 359.97438 * 6 5 4 36 36 H 1.08996 * 117.50173 * 145.02324 * 6 5 4 37 37 H 1.09007 * 117.50119 * 214.98181 * 7 5 4 38 38 H 1.09000 * 117.50340 * 359.97438 * 7 5 4 39 39 H 1.08997 * 109.46684 * 330.02544 * 10 9 8 40 40 H 1.09003 * 109.46988 * 210.03231 * 10 9 8 41 41 H 0.96996 * 120.00365 * 359.97438 * 13 11 10 42 42 H 1.08996 * 110.89448 * 85.10703 * 16 14 13 43 43 H 1.08993 * 110.76342 * 321.62368 * 16 14 13 44 44 H 1.09002 * 110.48891 * 279.18596 * 17 16 14 45 45 H 1.08998 * 110.48494 * 156.67683 * 17 16 14 46 46 H 1.09001 * 110.03084 * 95.60669 * 18 17 16 47 47 H 1.08995 * 110.03255 * 217.03136 * 18 17 16 48 48 H 1.09004 * 109.47161 * 53.53778 * 21 19 18 49 49 H 1.08998 * 109.47608 * 173.54594 * 21 19 18 50 50 H 0.97003 * 120.00510 * 0.02562 * 22 21 19 51 51 H 0.97003 * 120.00420 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1244 0.0000 4 6 3.5348 0.6766 -0.0056 5 6 4.7775 1.5290 -0.0123 6 6 4.6024 3.0350 0.1927 7 6 4.9701 2.4879 -1.1888 8 7 3.5096 -0.6555 -0.0036 9 6 2.2708 -1.0760 0.0039 10 6 1.8247 -2.5155 0.0089 11 6 1.6830 -2.9925 1.4314 12 8 1.9204 -2.2378 2.3506 13 7 1.2926 -4.2579 1.6820 14 6 1.1553 -4.7218 3.0649 15 1 0.8376 -3.9034 3.7110 16 6 2.4925 -5.3280 3.5693 17 6 2.0281 -6.2669 4.7104 18 6 0.7089 -6.8750 4.1910 19 6 0.1540 -5.8926 3.1447 20 1 0.0764 -6.3843 2.1750 21 6 -1.2187 -5.3792 3.5840 22 7 -2.1801 -6.4845 3.5724 23 6 -3.4826 -6.2629 3.9320 24 1 -3.8012 -5.2733 4.2245 25 6 -4.3937 -7.3102 3.9205 26 7 -4.0055 -8.5163 3.5645 27 14 -6.1708 -7.0076 4.4103 28 1 -6.9593 -6.6365 3.2079 29 1 -6.7358 -8.2425 5.0111 30 1 -6.2300 -5.9032 5.4013 31 1 -0.3634 0.0032 1.0276 32 1 -0.3633 0.8884 -0.5166 33 1 -0.3633 -0.8915 -0.5111 34 1 5.6688 1.0640 0.4090 35 1 3.5882 3.4094 0.3320 36 1 5.3786 3.5609 0.7486 37 1 5.9881 2.6541 -1.5413 38 1 4.1982 2.5020 -1.9583 39 1 2.5648 -3.1269 -0.5073 40 1 0.8646 -2.6002 -0.5001 41 1 1.1024 -4.8614 0.9469 42 1 3.1516 -4.5497 3.9537 43 1 2.9826 -5.8949 2.7779 44 1 1.8527 -5.6990 5.6242 45 1 2.7664 -7.0496 4.8847 46 1 0.9007 -7.8435 3.7291 47 1 0.0004 -6.9861 5.0117 48 1 -1.1480 -4.9697 4.5918 49 1 -1.5521 -4.6006 2.8980 50 1 -1.8938 -7.3737 3.3108 51 1 -4.6422 -9.2481 3.5561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716075026.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:44 Heat of formation + Delta-G solvation = 54.202580 kcal Electronic energy + Delta-G solvation = -30128.379595 eV Core-core repulsion = 26064.175967 eV Total energy + Delta-G solvation = -4064.203629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.26510 -41.06435 -39.25733 -38.16318 -36.29103 -34.93385 -34.79106 -33.63586 -33.25794 -30.42392 -30.09749 -28.59640 -27.90648 -26.26891 -24.76316 -24.03859 -23.31671 -22.69065 -21.56830 -21.41862 -20.96739 -20.46802 -19.24721 -18.24909 -18.10776 -17.57184 -16.84591 -16.63379 -16.39531 -16.30326 -16.12015 -15.83352 -15.36592 -15.16701 -14.96610 -14.72136 -14.61379 -14.44259 -14.20404 -14.16202 -13.52166 -13.32374 -13.13448 -13.12679 -12.97273 -12.79375 -12.71729 -12.41428 -12.37837 -12.12802 -11.95148 -11.90051 -11.86056 -11.73352 -11.63272 -11.48305 -11.29513 -11.15331 -11.06310 -10.92743 -10.73394 -10.20499 -10.05425 -8.98876 -7.95139 -5.23049 0.44990 1.29004 1.47335 1.48190 1.54135 1.56689 1.61981 2.21373 2.55536 2.79168 2.98063 3.34765 3.38153 3.46960 3.48843 3.68331 3.79941 3.87879 3.92183 4.00005 4.05888 4.21777 4.22523 4.25138 4.40694 4.41649 4.49756 4.53176 4.54529 4.56572 4.61461 4.69627 4.73750 4.74111 4.89283 4.98237 5.03946 5.10596 5.16310 5.17307 5.22143 5.26573 5.28448 5.36453 5.37032 5.46109 5.49946 5.62078 5.76334 6.27340 6.51653 7.03326 7.20113 7.34665 8.09882 8.35089 9.27769 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014762 B = 0.002078 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.247545 B =13471.680759 C =14834.736139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.376 5.376 3 N -0.342 5.342 4 C 0.240 3.760 5 C -0.095 4.095 6 C -0.154 4.154 7 C -0.141 4.141 8 N -0.559 5.559 9 C 0.294 3.706 10 C -0.061 4.061 11 C 0.521 3.479 12 O -0.581 6.581 13 N -0.702 5.702 14 C 0.154 3.846 15 H 0.070 0.930 16 C -0.122 4.122 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.089 4.089 20 H 0.089 0.911 21 C 0.162 3.838 22 N -0.738 5.738 23 C -0.246 4.246 24 H 0.069 0.931 25 C -0.071 4.071 26 N -0.964 5.964 27 Si 0.969 3.031 28 H -0.285 1.285 29 H -0.295 1.295 30 H -0.274 1.274 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.419 0.581 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.008 0.992 49 H 0.016 0.984 50 H 0.377 0.623 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.064 15.030 -11.977 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.166 5.166 3 N -0.171 5.171 4 C -0.041 4.041 5 C -0.116 4.116 6 C -0.192 4.192 7 C -0.180 4.180 8 N -0.287 5.287 9 C 0.017 3.983 10 C -0.102 4.102 11 C 0.307 3.693 12 O -0.460 6.460 13 N -0.354 5.354 14 C 0.049 3.951 15 H 0.089 0.911 16 C -0.160 4.160 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.108 4.108 20 H 0.107 0.893 21 C 0.035 3.965 22 N -0.381 5.381 23 C -0.378 4.378 24 H 0.087 0.913 25 C -0.264 4.264 26 N -0.615 5.615 27 Si 0.798 3.202 28 H -0.212 1.212 29 H -0.221 1.221 30 H -0.200 1.200 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.178 0.822 40 H 0.176 0.824 41 H 0.257 0.743 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.026 0.974 49 H 0.034 0.966 50 H 0.210 0.790 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 18.025 16.214 -11.267 26.735 hybrid contribution -1.636 -0.785 0.317 1.842 sum 16.389 15.430 -10.951 25.032 Atomic orbital electron populations 1.22329 0.71692 1.07072 1.04558 1.50331 1.09012 1.03341 1.53917 1.77838 1.01782 1.08858 1.28648 1.23632 0.93311 0.89527 0.97673 1.20256 0.92683 0.90584 1.08085 1.23090 1.03742 0.92362 1.00026 1.23099 1.04266 0.99667 0.90924 1.70185 1.20784 1.11435 1.26299 1.23856 0.85920 0.92733 0.95770 1.20384 1.08035 0.86523 0.95277 1.20524 0.75973 0.81887 0.90927 1.90763 1.51263 1.55997 1.47991 1.45839 1.68108 1.12431 1.08999 1.21749 0.95199 0.95416 0.82761 0.91146 1.22833 0.95925 0.98525 0.98749 1.22279 0.96504 0.98882 0.97710 1.22070 0.96735 0.98401 0.97946 1.22025 0.92905 0.95410 1.00451 0.89266 1.20819 0.88687 0.90259 0.96690 1.42476 1.06194 1.08115 1.81341 1.19566 0.87232 0.94689 1.36316 0.91277 1.25486 1.02075 0.95482 1.03317 1.69788 1.35140 1.00480 1.56071 0.85208 0.80531 0.76601 0.77814 1.21222 1.22130 1.19957 0.90639 0.87653 0.85664 0.84690 0.89408 0.85625 0.85186 0.89515 0.82238 0.82382 0.74270 0.92063 0.89319 0.92229 0.89733 0.90947 0.93359 0.97412 0.96626 0.79023 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 11.33 127.77 1.45 2.70 16 2 N -0.38 -8.94 4.04 -359.87 -1.45 -10.39 16 3 N -0.34 -9.55 12.24 -51.33 -0.63 -10.18 16 4 C 0.24 6.59 7.69 138.63 1.07 7.66 16 5 C -0.10 -1.92 6.33 -11.54 -0.07 -2.00 16 6 C -0.15 -2.43 10.14 30.62 0.31 -2.12 16 7 C -0.14 -2.02 10.24 30.62 0.31 -1.71 16 8 N -0.56 -15.91 11.19 -179.72 -2.01 -17.92 16 9 C 0.29 6.99 6.48 138.23 0.90 7.89 16 10 C -0.06 -0.88 6.03 29.10 0.18 -0.71 16 11 C 0.52 11.56 7.82 87.66 0.69 12.24 16 12 O -0.58 -19.22 15.68 -3.02 -0.05 -19.26 16 13 N -0.70 -13.35 5.16 -436.87 -2.25 -15.60 16 14 C 0.15 3.82 2.76 46.19 0.13 3.95 16 15 H 0.07 2.16 7.26 -2.38 -0.02 2.15 16 16 C -0.12 -2.66 6.61 32.01 0.21 -2.45 16 17 C -0.12 -2.64 6.82 31.67 0.22 -2.43 16 18 C -0.11 -3.19 6.13 31.32 0.19 -2.99 16 19 C -0.09 -2.50 2.71 -10.07 -0.03 -2.53 16 20 H 0.09 2.33 7.73 -2.39 -0.02 2.32 16 21 C 0.16 6.23 5.29 86.38 0.46 6.68 16 22 N -0.74 -35.96 5.34 -343.44 -1.83 -37.79 16 23 C -0.25 -13.51 9.99 84.03 0.84 -12.67 16 24 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 25 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 26 N -0.96 -57.25 13.06 21.65 0.28 -56.97 16 27 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 28 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 29 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 30 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.13 0.97 7.10 -2.39 -0.02 0.95 16 34 H 0.14 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.09 1.66 7.88 -2.39 -0.02 1.64 16 36 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.13 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.16 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.16 0.98 7.12 -2.39 -0.02 0.97 16 41 H 0.42 5.20 8.37 -92.71 -0.78 4.43 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 1.67 7.58 -2.39 -0.02 1.65 16 48 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 49 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.38 19.23 7.50 -92.71 -0.70 18.53 16 51 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -81.52 420.09 0.86 -80.66 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.52 Total: 32.05 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 7.30 Total: 7.99 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -7.90 Total: -148.85 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.26 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -81.52 0.86 -80.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716075026.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.860 kcal (2) G-P(sol) polarization free energy of solvation -81.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds