Wall clock time and date at job start Wed Apr 1 2020 05:32:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.47841 * 111.00009 * 2 1
4 4 C 1.54906 * 104.79338 * 146.36380 * 3 2 1
5 5 C 1.55143 * 101.65719 * 322.93403 * 4 3 2
6 6 C 1.47443 * 110.99781 * 120.84833 * 2 1 3
7 7 H 1.09002 * 109.88956 * 117.17431 * 6 2 1
8 8 C 1.50693 * 109.89015 * 356.14750 * 6 2 1
9 9 C 1.35363 * 126.38710 * 117.66382 * 8 6 2
10 10 C 1.41503 * 105.50556 * 180.08568 * 9 8 6
11 11 C 1.47702 * 126.51864 * 179.90306 * 10 9 8
12 12 O 1.21574 * 120.00638 * 359.70790 * 11 10 9
13 13 N 1.34783 * 119.99831 * 179.71018 * 11 10 9
14 14 C 1.46502 * 119.99749 * 179.97438 * 13 11 10
15 15 H 1.08998 * 109.47819 * 325.00667 * 14 13 11
16 16 C 1.53001 * 109.46957 * 205.00026 * 14 13 11
17 17 N 1.46493 * 109.47018 * 55.00695 * 16 14 13
18 18 C 1.36941 * 119.99887 * 179.97438 * 17 16 14
19 19 H 1.08002 * 119.99763 * 359.97438 * 18 17 16
20 20 C 1.38808 * 120.00083 * 179.71939 * 18 17 16
21 21 N 1.31625 * 119.99931 * 0.27966 * 20 18 17
22 22 Si 1.86802 * 120.00235 * 180.27538 * 20 18 17
23 23 H 1.48493 * 109.46894 * 90.00169 * 22 20 18
24 24 H 1.48502 * 109.47166 * 210.00205 * 22 20 18
25 25 H 1.48506 * 109.46928 * 330.00293 * 22 20 18
26 26 C 1.53008 * 109.46688 * 85.00370 * 14 13 11
27 27 C 1.52995 * 117.49989 * 8.74708 * 26 14 13
28 28 C 1.52995 * 117.49603 * 300.08446 * 26 14 13
29 29 N 1.31813 * 106.96015 * 359.63249 * 10 9 8
30 30 N 1.28468 * 110.07474 * 0.23016 * 29 10 9
31 31 H 0.96998 * 124.88150 * 179.97438 * 30 29 10
32 32 H 1.09003 * 109.47098 * 306.02349 * 1 2 3
33 33 H 1.08995 * 109.46911 * 66.02178 * 1 2 3
34 34 H 1.09000 * 109.47205 * 186.02056 * 1 2 3
35 35 H 1.08999 * 110.37897 * 265.19176 * 3 2 1
36 36 H 1.08999 * 110.37550 * 27.42923 * 3 2 1
37 37 H 1.08997 * 110.99434 * 81.02713 * 4 3 2
38 38 H 1.09000 * 110.99336 * 204.80319 * 4 3 2
39 39 H 1.09003 * 110.69948 * 277.27314 * 5 4 3
40 40 H 1.08995 * 110.70908 * 154.03697 * 5 4 3
41 41 H 1.08001 * 127.25117 * 359.96562 * 9 8 6
42 42 H 0.96995 * 120.00458 * 359.97438 * 13 11 10
43 43 H 1.09000 * 109.47293 * 294.99747 * 16 14 13
44 44 H 1.09000 * 109.46726 * 175.00825 * 16 14 13
45 45 H 0.96996 * 120.00437 * 359.97438 * 17 16 14
46 46 H 0.96996 * 120.00147 * 179.97438 * 21 20 18
47 47 H 1.09003 * 115.54844 * 154.41589 * 26 14 13
48 48 H 1.09000 * 117.49946 * 359.97438 * 27 26 14
49 49 H 1.08997 * 117.50143 * 145.02124 * 27 26 14
50 50 H 1.09011 * 117.49436 * 214.97698 * 28 26 14
51 51 H 1.08993 * 117.50382 * 359.97438 * 28 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3802 0.0000
4 6 3.3047 1.3026 0.8296
5 6 2.9159 0.2819 1.9315
6 6 1.9974 -0.7058 1.1818
7 1 2.5673 -1.5802 0.8674
8 6 0.8611 -1.1293 2.0765
9 6 0.5259 -2.3997 2.4020
10 6 -0.5973 -2.2878 3.2553
11 6 -1.3399 -3.4005 3.8814
12 8 -1.0009 -4.5497 3.6753
13 7 -2.3934 -3.1419 4.6813
14 6 -3.1303 -4.2456 5.3018
15 1 -3.1572 -5.0943 4.6184
16 6 -4.5591 -3.7945 5.6115
17 7 -5.1869 -3.2876 4.3888
18 6 -6.4755 -2.8254 4.4218
19 1 -7.0291 -2.8350 5.3492
20 6 -7.0685 -2.3397 3.2646
21 7 -6.3940 -2.3285 2.1343
22 14 -8.8237 -1.7020 3.3112
23 1 -8.8145 -0.2494 3.6193
24 1 -9.4662 -1.9239 1.9909
25 1 -9.5856 -2.4258 4.3604
26 6 -2.4330 -4.6582 6.5998
27 6 -1.2944 -3.7690 7.1036
28 6 -0.9849 -5.1417 6.5009
29 7 -0.8512 -1.0014 3.3899
30 7 -0.0087 -0.3119 2.7079
31 1 0.0010 0.6566 2.6541
32 1 -0.3633 0.6044 0.8312
33 1 -0.3633 0.4176 -0.9389
34 1 -0.3633 -1.0220 0.1078
35 1 2.2148 1.7039 -1.0182
36 1 1.2882 2.0595 0.4707
37 1 4.1302 0.9281 0.2243
38 1 3.5499 2.2720 1.2635
39 1 2.3744 0.7745 2.7392
40 1 3.8001 -0.2281 2.3137
41 1 1.0120 -3.3078 2.0771
42 1 -2.6638 -2.2251 4.8461
43 1 -4.5361 -3.0049 6.3626
44 1 -5.1328 -4.6401 5.9909
45 1 -4.6899 -3.2794 3.5559
46 1 -6.8085 -1.9894 1.3255
47 1 -3.0713 -5.1301 7.3469
48 1 -1.0417 -2.8904 6.5101
49 1 -1.1833 -3.6562 8.1820
50 1 -0.6703 -5.9314 7.1833
51 1 -0.5289 -5.1663 5.5112
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733172426.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:32:20
Heat of formation + Delta-G solvation = 99.326152 kcal
Electronic energy + Delta-G solvation = -31343.647775 eV
Core-core repulsion = 27281.400851 eV
Total energy + Delta-G solvation = -4062.246924 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.98622 -39.80055 -39.20895 -36.95261 -34.83792 -33.27764 -32.59950 -31.97396
-31.91522 -30.94212 -28.36308 -27.87658 -26.00309 -24.38296 -23.69179 -22.19452
-22.16674 -21.68069 -21.41374 -20.97211 -19.97247 -19.49880 -17.67103 -17.29154
-16.77185 -16.59605 -15.98228 -15.70585 -15.53481 -15.51323 -14.69678 -14.42269
-14.21871 -14.02525 -13.74079 -13.56893 -13.54330 -13.25255 -13.18118 -12.97658
-12.78690 -12.08414 -11.94823 -11.83754 -11.72393 -11.58505 -11.52822 -11.32553
-11.25737 -11.15182 -10.85900 -10.83032 -10.80627 -10.19996 -10.07889 -9.77534
-9.70596 -9.51209 -9.35843 -9.26253 -8.88247 -8.65806 -8.56495 -6.91932
-5.74199 -3.03891 1.63145 2.01169 2.69769 3.43563 3.46521 3.49230
3.51098 3.61576 3.69136 4.06372 4.13308 4.19686 4.26199 4.51359
4.59509 4.64613 4.91315 4.93635 4.98354 5.08842 5.15533 5.17417
5.25290 5.27460 5.34569 5.41035 5.42833 5.54666 5.57769 5.58018
5.64954 5.69908 5.77388 5.83640 5.86332 5.92024 6.07046 6.08932
6.29833 6.32696 6.39402 6.50709 6.53964 6.56921 6.59114 6.74449
6.83553 6.99798 7.71041 7.71387 8.02092 8.43187 8.56203 9.55007
10.11566 10.46984 11.47953
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.009089 B = 0.003200 C = 0.002496
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3079.757594 B = 8748.336103 C =11216.955502
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 N -0.522 5.522
3 C 0.034 3.966
4 C -0.129 4.129
5 C -0.138 4.138
6 C 0.142 3.858
7 H 0.115 0.885
8 C -0.003 4.003
9 C -0.163 4.163
10 C -0.004 4.004
11 C 0.604 3.396
12 O -0.536 6.536
13 N -0.693 5.693
14 C 0.168 3.832
15 H 0.093 0.907
16 C 0.148 3.852
17 N -0.731 5.731
18 C -0.240 4.240
19 H 0.070 0.930
20 C -0.012 4.012
21 N -0.930 5.930
22 Si 0.907 3.093
23 H -0.291 1.291
24 H -0.292 1.292
25 H -0.282 1.282
26 C -0.160 4.160
27 C -0.178 4.178
28 C -0.187 4.187
29 N -0.244 5.244
30 N -0.379 5.379
31 H 0.440 0.560
32 H 0.024 0.976
33 H 0.073 0.927
34 H 0.079 0.921
35 H 0.086 0.914
36 H 0.046 0.954
37 H 0.081 0.919
38 H 0.077 0.923
39 H 0.066 0.934
40 H 0.085 0.915
41 H 0.163 0.837
42 H 0.411 0.589
43 H 0.026 0.974
44 H 0.035 0.965
45 H 0.386 0.614
46 H 0.254 0.746
47 H 0.110 0.890
48 H 0.091 0.909
49 H 0.086 0.914
50 H 0.084 0.916
51 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.226 6.603 0.881 23.202
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 N -0.246 5.246
3 C -0.093 4.093
4 C -0.167 4.167
5 C -0.177 4.177
6 C 0.032 3.968
7 H 0.133 0.867
8 C -0.129 4.129
9 C -0.191 4.191
10 C -0.165 4.165
11 C 0.388 3.612
12 O -0.412 6.412
13 N -0.343 5.343
14 C 0.063 3.937
15 H 0.111 0.889
16 C 0.020 3.980
17 N -0.376 5.376
18 C -0.372 4.372
19 H 0.088 0.912
20 C -0.209 4.209
21 N -0.578 5.578
22 Si 0.738 3.262
23 H -0.218 1.218
24 H -0.218 1.218
25 H -0.208 1.208
26 C -0.180 4.180
27 C -0.215 4.215
28 C -0.223 4.223
29 N -0.080 5.080
30 N -0.095 5.095
31 H 0.285 0.715
32 H 0.043 0.957
33 H 0.091 0.909
34 H 0.097 0.903
35 H 0.104 0.896
36 H 0.064 0.936
37 H 0.099 0.901
38 H 0.095 0.905
39 H 0.084 0.916
40 H 0.104 0.896
41 H 0.180 0.820
42 H 0.247 0.753
43 H 0.044 0.956
44 H 0.053 0.947
45 H 0.220 0.780
46 H 0.064 0.936
47 H 0.128 0.872
48 H 0.110 0.890
49 H 0.104 0.896
50 H 0.102 0.898
51 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 21.677 6.240 0.864 22.573
hybrid contribution -0.920 1.286 0.115 1.586
sum 20.757 7.527 0.979 22.101
Atomic orbital electron populations
1.22750 0.86687 1.02863 1.00948 1.63868 1.08725 1.14234 1.37747
1.23195 0.95601 0.89350 1.01177 1.22729 0.97877 0.99370 0.96762
1.22898 1.00063 0.96851 0.97879 1.21206 0.90634 0.98559 0.86375
0.86747 1.21562 0.97871 0.91104 1.02379 1.21509 0.98658 0.96856
1.02114 1.21996 0.99568 0.90710 1.04245 1.16832 0.79839 0.86459
0.78026 1.90707 1.68010 1.20392 1.62077 1.45838 1.29925 1.11242
1.47329 1.20803 0.90931 0.89815 0.92159 0.88914 1.20911 0.88899
0.97016 0.91178 1.42346 1.13522 1.75498 1.06219 1.19205 0.89537
1.33588 0.94821 0.91154 1.24746 0.98344 1.02121 0.95645 1.69681
1.36639 1.52285 0.99196 0.86198 0.84661 0.78640 0.76716 1.21822
1.21820 1.20763 1.22694 0.91256 1.04537 0.99468 1.22889 1.03634
0.95016 0.99992 1.23341 0.98477 0.96645 1.03878 1.73665 1.14192
1.04975 1.15125 1.43521 1.21658 1.09688 1.34639 0.71523 0.95738
0.90857 0.90256 0.89611 0.93563 0.90070 0.90473 0.91571 0.89639
0.81979 0.75320 0.95614 0.94723 0.77951 0.93589 0.87212 0.89029
0.89582 0.89751 0.86523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 8.30 60.07 0.50 0.66 16
2 N -0.52 -4.59 5.44 -232.96 -1.27 -5.86 16
3 C 0.03 0.23 6.73 -2.30 -0.02 0.21 16
4 C -0.13 -0.68 7.08 -24.59 -0.17 -0.85 16
5 C -0.14 -0.85 6.46 -24.91 -0.16 -1.01 16
6 C 0.14 1.17 3.90 -67.88 -0.26 0.90 16
7 H 0.11 0.91 8.12 -51.93 -0.42 0.49 16
8 C 0.00 -0.04 3.67 -82.21 -0.30 -0.34 16
9 C -0.16 -2.17 10.72 -39.36 -0.42 -2.59 16
10 C 0.00 -0.06 7.13 -82.77 -0.59 -0.65 16
11 C 0.60 10.74 6.66 -12.39 -0.08 10.65 16
12 O -0.54 -10.45 13.95 5.30 0.07 -10.38 16
13 N -0.69 -12.09 3.05 -54.79 -0.17 -12.26 16
14 C 0.17 2.96 2.59 -67.93 -0.18 2.78 16
15 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16
16 C 0.15 2.97 5.80 -4.05 -0.02 2.95 16
17 N -0.73 -18.55 5.43 -59.91 -0.33 -18.87 16
18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16
19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
21 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16
22 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16
23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
26 C -0.16 -2.37 5.71 -90.62 -0.52 -2.89 16
27 C -0.18 -2.45 9.74 -26.69 -0.26 -2.71 16
28 C -0.19 -2.69 9.82 -26.69 -0.26 -2.95 16
29 N -0.24 -3.57 11.92 33.42 0.40 -3.17 16
30 N -0.38 -4.21 5.13 33.50 0.17 -4.04 16
31 H 0.44 3.75 7.86 -190.44 -1.50 2.25 16
32 H 0.02 0.24 5.40 -51.93 -0.28 -0.04 16
33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.08 0.99 7.14 -51.93 -0.37 0.62 16
35 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
36 H 0.05 0.29 7.68 -51.93 -0.40 -0.11 16
37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
39 H 0.07 0.42 7.57 -51.93 -0.39 0.02 16
40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
41 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16
42 H 0.41 7.31 8.33 -40.82 -0.34 6.97 16
43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
45 H 0.39 10.54 7.33 -40.82 -0.30 10.24 16
46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16
47 H 0.11 1.48 8.11 -51.93 -0.42 1.06 16
48 H 0.09 1.34 6.67 -51.93 -0.35 0.99 16
49 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16
50 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16
51 H 0.12 1.94 5.01 -51.93 -0.26 1.68 16
LS Contribution 402.94 15.07 6.07 6.07
Total: -1.00 -32.60 402.94 -11.54 -44.14
By element:
Atomic # 1 Polarization: 26.89 SS G_CDS: -9.20 Total: 17.69 kcal
Atomic # 6 Polarization: -0.17 SS G_CDS: -3.00 Total: -3.17 kcal
Atomic # 7 Polarization: -71.42 SS G_CDS: -0.47 Total: -71.89 kcal
Atomic # 8 Polarization: -10.45 SS G_CDS: 0.07 Total: -10.38 kcal
Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -32.60 -11.54 -44.14 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733172426.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 143.469 kcal
(2) G-P(sol) polarization free energy of solvation -32.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.864 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.143 kcal
(6) G-S(sol) free energy of system = (1) + (5) 99.326 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds