Wall clock time and date at job start Wed Apr 1 2020 05:32:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.47841 * 111.00009 * 2 1
4 4 C 1.54906 * 104.79338 * 146.36380 * 3 2 1
5 5 C 1.55143 * 101.65719 * 322.93403 * 4 3 2
6 6 C 1.47443 * 110.99781 * 120.84833 * 2 1 3
7 7 H 1.09002 * 109.88956 * 117.17431 * 6 2 1
8 8 C 1.50693 * 109.89015 * 356.14750 * 6 2 1
9 9 C 1.35363 * 126.38710 * 117.66382 * 8 6 2
10 10 C 1.41503 * 105.50556 * 180.08568 * 9 8 6
11 11 C 1.47702 * 126.51864 * 179.90306 * 10 9 8
12 12 O 1.21574 * 120.00638 * 359.70790 * 11 10 9
13 13 N 1.34783 * 119.99831 * 179.71018 * 11 10 9
14 14 C 1.46502 * 119.99749 * 179.97438 * 13 11 10
15 15 H 1.08998 * 109.47819 * 325.00667 * 14 13 11
16 16 C 1.53001 * 109.46957 * 205.00026 * 14 13 11
17 17 N 1.46493 * 109.47018 * 55.00695 * 16 14 13
18 18 C 1.36941 * 119.99887 * 179.97438 * 17 16 14
19 19 H 1.08002 * 119.99763 * 359.97438 * 18 17 16
20 20 C 1.38808 * 120.00083 * 179.71939 * 18 17 16
21 21 N 1.31625 * 119.99931 * 0.27966 * 20 18 17
22 22 Si 1.86802 * 120.00235 * 180.27538 * 20 18 17
23 23 H 1.48493 * 109.46894 * 90.00169 * 22 20 18
24 24 H 1.48502 * 109.47166 * 210.00205 * 22 20 18
25 25 H 1.48506 * 109.46928 * 330.00293 * 22 20 18
26 26 C 1.53008 * 109.46688 * 85.00370 * 14 13 11
27 27 C 1.52995 * 117.49989 * 8.74708 * 26 14 13
28 28 C 1.52995 * 117.49603 * 300.08446 * 26 14 13
29 29 N 1.31813 * 106.96015 * 359.63249 * 10 9 8
30 30 N 1.28468 * 110.07474 * 0.23016 * 29 10 9
31 31 H 0.96998 * 124.88150 * 179.97438 * 30 29 10
32 32 H 1.09003 * 109.47098 * 306.02349 * 1 2 3
33 33 H 1.08995 * 109.46911 * 66.02178 * 1 2 3
34 34 H 1.09000 * 109.47205 * 186.02056 * 1 2 3
35 35 H 1.08999 * 110.37897 * 265.19176 * 3 2 1
36 36 H 1.08999 * 110.37550 * 27.42923 * 3 2 1
37 37 H 1.08997 * 110.99434 * 81.02713 * 4 3 2
38 38 H 1.09000 * 110.99336 * 204.80319 * 4 3 2
39 39 H 1.09003 * 110.69948 * 277.27314 * 5 4 3
40 40 H 1.08995 * 110.70908 * 154.03697 * 5 4 3
41 41 H 1.08001 * 127.25117 * 359.96562 * 9 8 6
42 42 H 0.96995 * 120.00458 * 359.97438 * 13 11 10
43 43 H 1.09000 * 109.47293 * 294.99747 * 16 14 13
44 44 H 1.09000 * 109.46726 * 175.00825 * 16 14 13
45 45 H 0.96996 * 120.00437 * 359.97438 * 17 16 14
46 46 H 0.96996 * 120.00147 * 179.97438 * 21 20 18
47 47 H 1.09003 * 115.54844 * 154.41589 * 26 14 13
48 48 H 1.09000 * 117.49946 * 359.97438 * 27 26 14
49 49 H 1.08997 * 117.50143 * 145.02124 * 27 26 14
50 50 H 1.09011 * 117.49436 * 214.97698 * 28 26 14
51 51 H 1.08993 * 117.50382 * 359.97438 * 28 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9988 1.3802 0.0000
4 6 3.3047 1.3026 0.8296
5 6 2.9159 0.2819 1.9315
6 6 1.9974 -0.7058 1.1818
7 1 2.5673 -1.5802 0.8674
8 6 0.8611 -1.1293 2.0765
9 6 0.5259 -2.3997 2.4020
10 6 -0.5973 -2.2878 3.2553
11 6 -1.3399 -3.4005 3.8814
12 8 -1.0009 -4.5497 3.6753
13 7 -2.3934 -3.1419 4.6813
14 6 -3.1303 -4.2456 5.3018
15 1 -3.1572 -5.0943 4.6184
16 6 -4.5591 -3.7945 5.6115
17 7 -5.1869 -3.2876 4.3888
18 6 -6.4755 -2.8254 4.4218
19 1 -7.0291 -2.8350 5.3492
20 6 -7.0685 -2.3397 3.2646
21 7 -6.3940 -2.3285 2.1343
22 14 -8.8237 -1.7020 3.3112
23 1 -8.8145 -0.2494 3.6193
24 1 -9.4662 -1.9239 1.9909
25 1 -9.5856 -2.4258 4.3604
26 6 -2.4330 -4.6582 6.5998
27 6 -1.2944 -3.7690 7.1036
28 6 -0.9849 -5.1417 6.5009
29 7 -0.8512 -1.0014 3.3899
30 7 -0.0087 -0.3119 2.7079
31 1 0.0010 0.6566 2.6541
32 1 -0.3633 0.6044 0.8312
33 1 -0.3633 0.4176 -0.9389
34 1 -0.3633 -1.0220 0.1078
35 1 2.2148 1.7039 -1.0182
36 1 1.2882 2.0595 0.4707
37 1 4.1302 0.9281 0.2243
38 1 3.5499 2.2720 1.2635
39 1 2.3744 0.7745 2.7392
40 1 3.8001 -0.2281 2.3137
41 1 1.0120 -3.3078 2.0771
42 1 -2.6638 -2.2251 4.8461
43 1 -4.5361 -3.0049 6.3626
44 1 -5.1328 -4.6401 5.9909
45 1 -4.6899 -3.2794 3.5559
46 1 -6.8085 -1.9894 1.3255
47 1 -3.0713 -5.1301 7.3469
48 1 -1.0417 -2.8904 6.5101
49 1 -1.1833 -3.6562 8.1820
50 1 -0.6703 -5.9314 7.1833
51 1 -0.5289 -5.1663 5.5112
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733172426.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:32:19
Heat of formation + Delta-G solvation = 76.118298 kcal
Electronic energy + Delta-G solvation = -31344.654143 eV
Core-core repulsion = 27281.400851 eV
Total energy + Delta-G solvation = -4063.253292 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-44.01202 -41.12664 -39.93654 -38.31523 -36.55294 -34.85689 -33.44095 -33.10595
-32.89383 -32.55031 -29.88902 -28.80744 -26.74826 -26.12677 -25.13411 -23.46451
-23.10320 -22.89259 -22.21719 -21.88887 -21.19261 -20.84620 -19.24948 -18.60361
-17.99011 -17.44062 -17.22403 -17.05234 -16.57072 -16.53620 -16.28304 -15.63760
-15.26339 -15.14755 -15.00899 -14.94496 -14.75363 -14.56685 -14.42749 -14.16279
-13.63939 -13.59529 -13.13617 -12.89816 -12.77082 -12.67097 -12.66555 -12.55567
-12.32903 -12.29507 -12.10068 -12.07510 -11.98293 -11.84407 -11.64493 -11.39940
-11.06869 -10.97578 -10.80166 -10.45647 -10.21936 -9.96632 -9.40529 -9.01765
-7.94028 -5.24141 0.46964 0.97293 1.46607 1.48505 1.57015 1.73473
2.17412 2.35853 2.55175 2.95371 2.95925 3.26713 3.39938 3.41217
3.58155 3.64330 3.71793 3.95812 4.07228 4.09373 4.13653 4.18417
4.24774 4.32375 4.37067 4.43627 4.47796 4.49803 4.55426 4.59851
4.65285 4.83287 4.87045 4.87638 4.90903 4.96093 5.03582 5.06102
5.13245 5.13443 5.22711 5.27305 5.28230 5.40341 5.49318 5.54925
5.81165 5.87105 5.97453 6.25639 6.44602 6.79445 7.17044 7.32790
8.06198 8.30282 9.28968
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.009089 B = 0.003200 C = 0.002496
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3079.757594 B = 8748.336103 C =11216.955502
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.529 5.529
3 C 0.030 3.970
4 C -0.120 4.120
5 C -0.134 4.134
6 C 0.141 3.859
7 H 0.120 0.880
8 C 0.024 3.976
9 C -0.183 4.183
10 C -0.030 4.030
11 C 0.601 3.399
12 O -0.560 6.560
13 N -0.691 5.691
14 C 0.176 3.824
15 H 0.066 0.934
16 C 0.150 3.850
17 N -0.743 5.743
18 C -0.243 4.243
19 H 0.080 0.920
20 C -0.076 4.076
21 N -0.969 5.969
22 Si 0.975 3.025
23 H -0.287 1.287
24 H -0.299 1.299
25 H -0.268 1.268
26 C -0.165 4.165
27 C -0.165 4.165
28 C -0.186 4.186
29 N -0.262 5.262
30 N -0.363 5.363
31 H 0.452 0.548
32 H 0.027 0.973
33 H 0.077 0.923
34 H 0.050 0.950
35 H 0.091 0.909
36 H 0.051 0.949
37 H 0.087 0.913
38 H 0.094 0.906
39 H 0.066 0.934
40 H 0.098 0.902
41 H 0.166 0.834
42 H 0.409 0.591
43 H 0.038 0.962
44 H 0.043 0.957
45 H 0.373 0.627
46 H 0.249 0.751
47 H 0.130 0.870
48 H 0.079 0.921
49 H 0.111 0.889
50 H 0.107 0.893
51 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 23.376 8.031 2.165 24.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.252 5.252
3 C -0.098 4.098
4 C -0.158 4.158
5 C -0.173 4.173
6 C 0.031 3.969
7 H 0.138 0.862
8 C -0.103 4.103
9 C -0.211 4.211
10 C -0.190 4.190
11 C 0.386 3.614
12 O -0.438 6.438
13 N -0.340 5.340
14 C 0.071 3.929
15 H 0.084 0.916
16 C 0.024 3.976
17 N -0.386 5.386
18 C -0.374 4.374
19 H 0.098 0.902
20 C -0.268 4.268
21 N -0.619 5.619
22 Si 0.804 3.196
23 H -0.214 1.214
24 H -0.225 1.225
25 H -0.193 1.193
26 C -0.184 4.184
27 C -0.202 4.202
28 C -0.223 4.223
29 N -0.099 5.099
30 N -0.080 5.080
31 H 0.300 0.700
32 H 0.045 0.955
33 H 0.095 0.905
34 H 0.069 0.931
35 H 0.109 0.891
36 H 0.069 0.931
37 H 0.105 0.895
38 H 0.112 0.888
39 H 0.085 0.915
40 H 0.116 0.884
41 H 0.183 0.817
42 H 0.244 0.756
43 H 0.056 0.944
44 H 0.061 0.939
45 H 0.205 0.795
46 H 0.058 0.942
47 H 0.148 0.852
48 H 0.098 0.902
49 H 0.130 0.870
50 H 0.125 0.875
51 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges 22.833 7.676 2.204 24.189
hybrid contribution -1.206 0.860 -0.309 1.513
sum 21.627 8.535 1.894 23.327
Atomic orbital electron populations
1.22648 0.87894 1.01058 1.01317 1.63894 1.07603 1.15920 1.37825
1.23311 0.96421 0.88006 1.02012 1.22717 0.97097 0.99902 0.96070
1.22904 0.99903 0.96518 0.97948 1.21392 0.89890 0.99541 0.86048
0.86224 1.21864 0.97456 0.90040 1.00971 1.21661 0.98581 0.98234
1.02652 1.21843 1.00709 0.90712 1.05752 1.17116 0.79758 0.86780
0.77699 1.90681 1.68751 1.21503 1.62915 1.45794 1.29860 1.10929
1.47462 1.20604 0.90196 0.88871 0.93202 0.91553 1.21042 0.90014
0.97229 0.89355 1.42528 1.13061 1.75681 1.07349 1.19641 0.90513
1.32244 0.95026 0.90197 1.25585 1.02466 1.03294 0.95431 1.69857
1.38349 1.54004 0.99719 0.85121 0.79920 0.78080 0.76495 1.21360
1.22539 1.19290 1.22627 0.91697 1.05729 0.98364 1.22928 1.01966
0.94118 1.01182 1.23290 0.97704 0.97958 1.03304 1.73587 1.15310
1.04761 1.16260 1.43554 1.20749 1.10287 1.33459 0.69991 0.95498
0.90473 0.93068 0.89075 0.93058 0.89471 0.88756 0.91485 0.88382
0.81671 0.75569 0.94432 0.93917 0.79528 0.94239 0.85241 0.90210
0.87042 0.87499 0.88959
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.40 8.30 127.69 1.06 1.46 16
2 N -0.53 -8.63 5.44 -890.94 -4.85 -13.48 16
3 C 0.03 0.33 6.73 86.77 0.58 0.91 16
4 C -0.12 -0.90 7.08 31.98 0.23 -0.67 16
5 C -0.13 -1.31 6.46 31.78 0.21 -1.11 16
6 C 0.14 2.13 3.90 44.51 0.17 2.30 16
7 H 0.12 1.74 8.12 -2.39 -0.02 1.72 16
8 C 0.02 0.50 3.67 41.40 0.15 0.65 16
9 C -0.18 -5.03 10.72 22.41 0.24 -4.79 16
10 C -0.03 -1.00 7.13 42.45 0.30 -0.70 16
11 C 0.60 22.46 6.66 86.74 0.58 23.04 16
12 O -0.56 -23.10 13.95 -3.95 -0.06 -23.16 16
13 N -0.69 -25.02 3.05 -445.52 -1.36 -26.38 16
14 C 0.18 6.33 2.59 44.99 0.12 6.45 16
15 H 0.07 2.74 7.58 -2.39 -0.02 2.72 16
16 C 0.15 6.02 5.80 86.38 0.50 6.53 16
17 N -0.74 -38.34 5.43 -343.46 -1.87 -40.20 16
18 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16
19 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16
20 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16
21 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16
22 Si 0.97 46.63 29.55 68.60 2.03 48.65 16
23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16
24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16
25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
26 C -0.16 -4.73 5.71 -10.79 -0.06 -4.79 16
27 C -0.16 -4.29 9.74 30.62 0.30 -3.99 16
28 C -0.19 -5.20 9.82 30.62 0.30 -4.90 16
29 N -0.26 -7.86 11.92 -48.18 -0.57 -8.44 16
30 N -0.36 -7.96 5.13 -47.93 -0.25 -8.20 16
31 H 0.45 7.25 7.86 -220.00 -1.73 5.52 16
32 H 0.03 0.51 5.40 -2.39 -0.01 0.50 16
33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
34 H 0.05 1.32 7.14 -2.39 -0.02 1.31 16
35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16
36 H 0.05 0.53 7.68 -2.39 -0.02 0.51 16
37 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16
38 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16
39 H 0.07 0.67 7.57 -2.39 -0.02 0.65 16
40 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
41 H 0.17 4.30 8.06 -2.91 -0.02 4.27 16
42 H 0.41 15.07 8.33 -92.71 -0.77 14.30 16
43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
44 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
45 H 0.37 21.08 7.33 -92.71 -0.68 20.40 16
46 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16
47 H 0.13 3.22 8.11 -2.39 -0.02 3.20 16
48 H 0.08 2.29 6.67 -2.39 -0.02 2.28 16
49 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16
50 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16
51 H 0.09 3.12 5.01 -2.39 -0.01 3.11 16
Total: -1.00 -71.71 402.94 -2.86 -74.57
By element:
Atomic # 1 Polarization: 55.48 SS G_CDS: -2.20 Total: 53.27 kcal
Atomic # 6 Polarization: -2.29 SS G_CDS: 5.98 Total: 3.70 kcal
Atomic # 7 Polarization: -148.43 SS G_CDS: -8.61 Total: -157.04 kcal
Atomic # 8 Polarization: -23.10 SS G_CDS: -0.06 Total: -23.16 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal
Total: -71.71 -2.86 -74.57 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733172426.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.689 kcal
(2) G-P(sol) polarization free energy of solvation -71.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.980 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.861 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.118 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds