Wall clock time and date at job start Wed Apr 1 2020 05:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34262 * 125.75423 * 2 1 4 4 C 1.38036 * 107.41777 * 179.76895 * 3 2 1 5 5 C 1.47433 * 126.41682 * 180.22263 * 4 3 2 6 6 O 1.21602 * 119.99795 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99808 * 0.03258 * 5 4 3 8 8 C 1.46497 * 120.00018 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47300 * 179.97438 * 8 7 5 10 10 N 1.46897 * 109.47345 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99989 * 294.30501 * 10 9 8 12 12 C 1.53245 * 109.33664 * 172.74502 * 11 10 9 13 13 N 1.47081 * 108.51922 * 53.83301 * 12 11 10 14 14 C 1.36939 * 120.88039 * 128.84123 * 13 12 11 15 15 H 1.08002 * 119.99475 * 333.47407 * 14 13 12 16 16 C 1.38805 * 120.00194 * 153.48482 * 14 13 12 17 17 N 1.31622 * 120.00218 * 159.43669 * 16 14 13 18 18 Si 1.86798 * 119.99998 * 339.43447 * 16 14 13 19 19 H 1.48501 * 109.46992 * 91.97757 * 18 16 14 20 20 H 1.48502 * 109.47467 * 211.97716 * 18 16 14 21 21 H 1.48500 * 109.47150 * 331.98016 * 18 16 14 22 22 C 1.47081 * 118.23862 * 308.80785 * 13 12 11 23 23 C 1.46904 * 111.00016 * 170.00475 * 10 9 8 24 24 C 1.41290 * 107.16983 * 0.23063 * 4 3 2 25 25 C 1.50706 * 125.98898 * 179.97438 * 24 4 3 26 26 C 1.52997 * 117.49940 * 188.61841 * 25 24 4 27 27 C 1.52998 * 60.00189 * 252.51148 * 26 25 24 28 28 N 1.30442 * 108.02670 * 359.97438 * 24 4 3 29 29 H 1.09001 * 109.46898 * 89.99875 * 1 2 3 30 30 H 1.08999 * 109.47158 * 209.99978 * 1 2 3 31 31 H 1.09002 * 109.46909 * 329.99750 * 1 2 3 32 32 H 1.07999 * 126.28784 * 0.03378 * 3 2 1 33 33 H 0.97004 * 119.99726 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.47471 * 299.99786 * 8 7 5 35 35 H 1.09006 * 109.47054 * 60.00074 * 8 7 5 36 36 H 1.08999 * 109.47611 * 300.01014 * 9 8 7 37 37 H 1.09006 * 109.46638 * 60.00271 * 9 8 7 38 38 H 1.08998 * 109.49307 * 292.70614 * 11 10 9 39 39 H 1.09000 * 109.49080 * 52.78566 * 11 10 9 40 40 H 1.08997 * 109.62487 * 294.12115 * 12 11 10 41 41 H 1.08998 * 109.62172 * 173.53812 * 12 11 10 42 42 H 0.96996 * 119.99802 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.62932 * 291.48253 * 22 13 12 44 44 H 1.08992 * 109.78816 * 170.99092 * 22 13 12 45 45 H 1.09006 * 109.48987 * 307.21450 * 23 10 9 46 46 H 1.08996 * 109.49203 * 67.29167 * 23 10 9 47 47 H 1.09003 * 115.54889 * 334.32720 * 25 24 4 48 48 H 1.08997 * 117.49927 * 0.02562 * 26 25 24 49 49 H 1.09003 * 117.49894 * 145.02089 * 26 25 24 50 50 H 1.09006 * 117.49894 * 252.51450 * 27 26 25 51 51 H 1.08990 * 117.51926 * 107.48297 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5598 0.6553 0.0053 5 6 4.7639 1.5062 0.0119 6 8 5.8681 0.9970 0.0157 7 7 4.6406 2.8483 0.0138 8 6 5.8369 3.6937 0.0208 9 6 5.4209 5.1661 0.0210 10 7 6.6205 6.0139 0.0274 11 6 7.3707 5.8551 1.2805 12 6 8.6998 6.6107 1.1755 13 7 8.4170 8.0022 0.7920 14 6 8.9420 9.0478 1.5035 15 1 9.1922 8.9197 2.5463 16 6 9.1524 10.2723 0.8846 17 7 9.2619 11.3657 1.6090 18 14 9.2802 10.3684 -0.9765 19 1 7.9375 10.6363 -1.5517 20 1 10.2078 11.4651 -1.3531 21 1 9.7966 9.0800 -1.5044 22 6 7.5560 8.2408 -0.3763 23 6 6.2720 7.4211 -0.2103 24 6 3.5311 -0.7573 0.0031 25 6 4.7322 -1.6675 0.0067 26 6 4.4857 -3.1633 -0.1999 27 6 4.8806 -2.6367 1.1812 28 7 2.2828 -1.1356 -0.0026 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9166 2.1169 0.0005 33 1 3.7596 3.2544 0.0104 34 1 6.4261 3.4823 0.9131 35 1 6.4343 3.4854 -0.8669 36 1 4.8319 5.3774 -0.8715 37 1 4.8234 5.3747 0.9085 38 1 6.7869 6.2590 2.1076 39 1 7.5665 4.7972 1.4555 40 1 9.3282 6.1425 0.4179 41 1 9.2082 6.5926 2.1394 42 1 9.4093 12.2213 1.1765 43 1 8.0746 7.9293 -1.2831 44 1 7.3082 9.3002 -0.4418 45 1 5.6710 7.4988 -1.1163 46 1 5.7036 7.8032 0.6376 47 1 5.6440 -1.2444 -0.4150 48 1 3.4548 -3.4890 -0.3388 49 1 5.2353 -3.7246 -0.7578 50 1 5.8901 -2.8515 1.5320 51 1 4.1098 -2.6157 1.9515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752366312.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:49 Heat of formation + Delta-G solvation = 110.553505 kcal Electronic energy + Delta-G solvation = -29969.502061 eV Core-core repulsion = 25907.741991 eV Total energy + Delta-G solvation = -4061.760069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.85182 -39.39860 -38.39089 -37.39855 -35.54115 -34.04923 -33.46760 -31.69790 -30.98754 -30.45760 -28.94467 -27.71988 -26.04023 -23.90827 -23.55195 -22.86947 -22.59251 -22.34365 -21.61021 -20.43174 -19.62330 -19.41792 -18.06574 -16.92382 -16.48049 -16.18614 -15.91628 -15.66578 -15.54262 -15.39759 -14.98305 -14.58687 -14.45606 -14.11087 -13.99883 -13.90800 -13.65025 -13.48975 -13.29163 -13.15034 -12.84088 -12.46410 -12.17650 -12.08878 -11.77723 -11.74829 -11.62860 -11.39785 -11.35644 -11.11540 -10.88315 -10.65627 -10.58772 -10.31136 -10.07353 -9.97866 -9.79460 -9.59238 -9.45330 -9.22640 -8.90979 -8.64538 -8.07107 -6.95533 -5.93764 -3.28930 1.10101 1.76362 1.87700 3.00886 3.23919 3.32588 3.50524 3.55426 3.73231 3.87224 4.07876 4.25741 4.33114 4.54577 4.55547 4.60016 4.74780 4.79532 4.81809 4.85245 4.97271 4.99549 5.07988 5.12310 5.32675 5.34078 5.41733 5.42609 5.60103 5.63149 5.70435 5.82428 5.89893 5.93976 5.94401 5.97180 6.02998 6.07645 6.10859 6.21742 6.28618 6.36657 6.38993 6.58171 6.66125 6.89279 7.16102 7.32806 7.39436 7.43585 7.95288 8.16740 8.33488 8.94151 9.72869 10.12232 11.22258 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.001839 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.597735 B =15225.665207 C =15939.684508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.361 5.361 3 C 0.098 3.902 4 C -0.280 4.280 5 C 0.594 3.406 6 O -0.536 6.536 7 N -0.729 5.729 8 C 0.124 3.876 9 C 0.045 3.955 10 N -0.531 5.531 11 C 0.037 3.963 12 C 0.151 3.849 13 N -0.609 5.609 14 C -0.258 4.258 15 H 0.086 0.914 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.884 3.116 19 H -0.289 1.289 20 H -0.304 1.304 21 H -0.269 1.269 22 C 0.130 3.870 23 C 0.045 3.955 24 C 0.165 3.835 25 C -0.083 4.083 26 C -0.169 4.169 27 C -0.159 4.159 28 N -0.300 5.300 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.183 0.817 33 H 0.394 0.606 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.262 0.738 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.036 0.964 47 H 0.140 0.860 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.302 -25.034 -3.968 32.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.139 5.139 3 C -0.053 4.053 4 C -0.295 4.295 5 C 0.381 3.619 6 O -0.413 6.413 7 N -0.381 5.381 8 C 0.000 4.000 9 C -0.084 4.084 10 N -0.256 5.256 11 C -0.092 4.092 12 C 0.025 3.975 13 N -0.333 5.333 14 C -0.386 4.386 15 H 0.103 0.897 16 C -0.178 4.178 17 N -0.553 5.553 18 Si 0.715 3.285 19 H -0.217 1.217 20 H -0.232 1.232 21 H -0.194 1.194 22 C 0.004 3.996 23 C -0.084 4.084 24 C -0.002 4.002 25 C -0.103 4.103 26 C -0.206 4.206 27 C -0.197 4.197 28 N -0.121 5.121 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.200 0.800 33 H 0.227 0.773 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.158 0.842 48 H 0.118 0.882 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.121 -26.330 -4.324 33.419 hybrid contribution -0.663 1.624 -0.398 1.798 sum -20.783 -24.707 -4.722 32.629 Atomic orbital electron populations 1.22012 0.73359 1.05065 1.03981 1.48280 1.07111 1.03761 1.54719 1.23084 0.90394 0.93820 0.98033 1.20206 0.92558 0.93815 1.22940 1.17161 0.87668 0.81229 0.75825 1.90760 1.26783 1.73588 1.50202 1.45763 1.09919 1.05846 1.76533 1.21349 0.86724 0.88507 1.03387 1.22207 0.93064 0.92262 1.00883 1.61835 1.20229 1.07710 1.35821 1.22748 0.97118 0.99945 0.89368 1.21014 0.92833 0.84680 0.98960 1.44424 1.54668 1.01675 1.32537 1.18934 1.37346 0.88777 0.93543 0.89671 1.25269 0.99426 0.95526 0.97596 1.69838 1.52444 0.97890 1.35153 0.86946 0.76859 0.77085 0.87648 1.21688 1.23193 1.19407 1.21429 0.89578 0.98025 0.90591 1.22646 0.98994 0.87106 0.99651 1.21444 0.91968 0.91756 0.95020 1.20550 0.95338 0.89103 1.05312 1.23010 1.03116 0.94866 0.99642 1.22960 1.03111 1.02039 0.91568 1.77148 1.01200 1.07060 1.26662 0.90130 0.88822 0.88937 0.79957 0.77282 0.91071 0.90384 0.90674 0.94728 0.94802 0.91108 0.95024 0.91590 0.92809 0.94882 0.90703 0.91603 0.94548 0.84189 0.88239 0.88213 0.87929 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.27 11.44 59.85 0.68 0.95 16 2 N -0.36 -2.67 3.98 -67.59 -0.27 -2.94 16 3 C 0.10 0.68 10.99 -16.56 -0.18 0.50 16 4 C -0.28 -2.94 6.13 -105.07 -0.64 -3.58 16 5 C 0.59 7.22 7.81 -12.52 -0.10 7.12 16 6 O -0.54 -8.39 15.00 5.28 0.08 -8.31 16 7 N -0.73 -7.10 5.54 -61.38 -0.34 -7.44 16 8 C 0.12 1.45 5.60 -4.04 -0.02 1.43 16 9 C 0.04 0.53 5.08 -3.83 -0.02 0.51 16 10 N -0.53 -8.41 4.63 -234.31 -1.08 -9.49 16 11 C 0.04 0.62 5.46 -3.70 -0.02 0.60 16 12 C 0.15 3.03 6.69 -3.60 -0.02 3.01 16 13 N -0.61 -14.63 2.82 -172.01 -0.48 -15.11 16 14 C -0.26 -7.24 10.08 -15.06 -0.15 -7.39 16 15 H 0.09 2.55 8.05 -52.49 -0.42 2.12 16 16 C 0.02 0.59 5.24 -17.43 -0.09 0.50 16 17 N -0.91 -27.94 13.97 55.49 0.78 -27.17 16 18 Si 0.88 22.50 24.31 -169.99 -4.13 18.37 16 19 H -0.29 -7.01 6.58 56.52 0.37 -6.64 16 20 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 21 H -0.27 -6.82 6.61 56.52 0.37 -6.44 16 22 C 0.13 2.84 4.35 -3.60 -0.02 2.82 16 23 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 24 C 0.16 1.87 6.80 -82.02 -0.56 1.31 16 25 C -0.08 -0.89 5.65 -91.77 -0.52 -1.41 16 26 C -0.17 -1.44 10.14 -26.73 -0.27 -1.71 16 27 C -0.16 -1.42 10.23 -26.73 -0.27 -1.69 16 28 N -0.30 -3.15 12.08 33.90 0.41 -2.74 16 29 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.18 0.47 7.46 -52.49 -0.39 0.08 16 33 H 0.39 2.53 7.40 -40.82 -0.30 2.23 16 34 H 0.07 0.93 6.40 -51.93 -0.33 0.60 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.78 7.97 -51.93 -0.41 0.36 16 37 H 0.03 0.39 8.13 -51.93 -0.42 -0.03 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.03 6.16 -51.93 -0.32 0.71 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 1.30 7.95 -51.93 -0.41 0.88 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.03 0.74 6.94 -51.93 -0.36 0.38 16 44 H 0.08 1.77 4.61 -51.93 -0.24 1.53 16 45 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.14 1.68 6.73 -51.93 -0.35 1.33 16 48 H 0.10 0.87 7.90 -51.93 -0.41 0.46 16 49 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 51 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 403.36 15.07 6.08 6.08 Total: -1.00 -36.17 403.36 -9.41 -45.58 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.21 Total: -0.56 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.23 Total: 3.75 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.99 Total: -64.90 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.13 Total: 18.37 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.17 -9.41 -45.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752366312.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.134 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds