Wall clock time and date at job start Wed Apr 1 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34262 * 125.75423 * 2 1 4 4 C 1.38036 * 107.41777 * 179.76895 * 3 2 1 5 5 C 1.47433 * 126.41682 * 180.22263 * 4 3 2 6 6 O 1.21602 * 119.99795 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99808 * 0.03258 * 5 4 3 8 8 C 1.46497 * 120.00018 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47300 * 179.97438 * 8 7 5 10 10 N 1.46897 * 109.47345 * 180.02562 * 9 8 7 11 11 C 1.46903 * 110.99989 * 294.30501 * 10 9 8 12 12 C 1.53245 * 109.33664 * 172.74502 * 11 10 9 13 13 N 1.47081 * 108.51922 * 53.83301 * 12 11 10 14 14 C 1.36939 * 120.88039 * 128.84123 * 13 12 11 15 15 H 1.08002 * 119.99475 * 333.47407 * 14 13 12 16 16 C 1.38805 * 120.00194 * 153.48482 * 14 13 12 17 17 N 1.31622 * 120.00218 * 159.43669 * 16 14 13 18 18 Si 1.86798 * 119.99998 * 339.43447 * 16 14 13 19 19 H 1.48501 * 109.46992 * 91.97757 * 18 16 14 20 20 H 1.48502 * 109.47467 * 211.97716 * 18 16 14 21 21 H 1.48500 * 109.47150 * 331.98016 * 18 16 14 22 22 C 1.47081 * 118.23862 * 308.80785 * 13 12 11 23 23 C 1.46904 * 111.00016 * 170.00475 * 10 9 8 24 24 C 1.41290 * 107.16983 * 0.23063 * 4 3 2 25 25 C 1.50706 * 125.98898 * 179.97438 * 24 4 3 26 26 C 1.52997 * 117.49940 * 188.61841 * 25 24 4 27 27 C 1.52998 * 60.00189 * 252.51148 * 26 25 24 28 28 N 1.30442 * 108.02670 * 359.97438 * 24 4 3 29 29 H 1.09001 * 109.46898 * 89.99875 * 1 2 3 30 30 H 1.08999 * 109.47158 * 209.99978 * 1 2 3 31 31 H 1.09002 * 109.46909 * 329.99750 * 1 2 3 32 32 H 1.07999 * 126.28784 * 0.03378 * 3 2 1 33 33 H 0.97004 * 119.99726 * 359.97438 * 7 5 4 34 34 H 1.08999 * 109.47471 * 299.99786 * 8 7 5 35 35 H 1.09006 * 109.47054 * 60.00074 * 8 7 5 36 36 H 1.08999 * 109.47611 * 300.01014 * 9 8 7 37 37 H 1.09006 * 109.46638 * 60.00271 * 9 8 7 38 38 H 1.08998 * 109.49307 * 292.70614 * 11 10 9 39 39 H 1.09000 * 109.49080 * 52.78566 * 11 10 9 40 40 H 1.08997 * 109.62487 * 294.12115 * 12 11 10 41 41 H 1.08998 * 109.62172 * 173.53812 * 12 11 10 42 42 H 0.96996 * 119.99802 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.62932 * 291.48253 * 22 13 12 44 44 H 1.08992 * 109.78816 * 170.99092 * 22 13 12 45 45 H 1.09006 * 109.48987 * 307.21450 * 23 10 9 46 46 H 1.08996 * 109.49203 * 67.29167 * 23 10 9 47 47 H 1.09003 * 115.54889 * 334.32720 * 25 24 4 48 48 H 1.08997 * 117.49927 * 0.02562 * 26 25 24 49 49 H 1.09003 * 117.49894 * 145.02089 * 26 25 24 50 50 H 1.09006 * 117.49894 * 252.51450 * 27 26 25 51 51 H 1.08990 * 117.51926 * 107.48297 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5598 0.6553 0.0053 5 6 4.7639 1.5062 0.0119 6 8 5.8681 0.9970 0.0157 7 7 4.6406 2.8483 0.0138 8 6 5.8369 3.6937 0.0208 9 6 5.4209 5.1661 0.0210 10 7 6.6205 6.0139 0.0274 11 6 7.3707 5.8551 1.2805 12 6 8.6998 6.6107 1.1755 13 7 8.4170 8.0022 0.7920 14 6 8.9420 9.0478 1.5035 15 1 9.1922 8.9197 2.5463 16 6 9.1524 10.2723 0.8846 17 7 9.2619 11.3657 1.6090 18 14 9.2802 10.3684 -0.9765 19 1 7.9375 10.6363 -1.5517 20 1 10.2078 11.4651 -1.3531 21 1 9.7966 9.0800 -1.5044 22 6 7.5560 8.2408 -0.3763 23 6 6.2720 7.4211 -0.2103 24 6 3.5311 -0.7573 0.0031 25 6 4.7322 -1.6675 0.0067 26 6 4.4857 -3.1633 -0.1999 27 6 4.8806 -2.6367 1.1812 28 7 2.2828 -1.1356 -0.0026 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9166 2.1169 0.0005 33 1 3.7596 3.2544 0.0104 34 1 6.4261 3.4823 0.9131 35 1 6.4343 3.4854 -0.8669 36 1 4.8319 5.3774 -0.8715 37 1 4.8234 5.3747 0.9085 38 1 6.7869 6.2590 2.1076 39 1 7.5665 4.7972 1.4555 40 1 9.3282 6.1425 0.4179 41 1 9.2082 6.5926 2.1394 42 1 9.4093 12.2213 1.1765 43 1 8.0746 7.9293 -1.2831 44 1 7.3082 9.3002 -0.4418 45 1 5.6710 7.4988 -1.1163 46 1 5.7036 7.8032 0.6376 47 1 5.6440 -1.2444 -0.4150 48 1 3.4548 -3.4890 -0.3388 49 1 5.2353 -3.7246 -0.7578 50 1 5.8901 -2.8515 1.5320 51 1 4.1098 -2.6157 1.9515 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752366312.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:48 Heat of formation + Delta-G solvation = 83.091511 kcal Electronic energy + Delta-G solvation = -29970.692902 eV Core-core repulsion = 25907.741991 eV Total energy + Delta-G solvation = -4062.950911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.48598 -40.37595 -39.72273 -38.09377 -36.89994 -35.36596 -33.99167 -33.60889 -32.09512 -31.73653 -30.11113 -28.25127 -27.50347 -25.29378 -24.67316 -24.02581 -23.41819 -23.21306 -22.73887 -21.27942 -20.97312 -20.29751 -18.83509 -18.73727 -17.45381 -17.12410 -16.85095 -16.79786 -16.42639 -16.27189 -15.94269 -15.78879 -15.76656 -15.51723 -15.39282 -15.15101 -14.69425 -14.42650 -14.29615 -14.05592 -13.81517 -13.61227 -13.55910 -13.38132 -12.97969 -12.88208 -12.55334 -12.47643 -12.43832 -12.18543 -12.07495 -12.04875 -11.76174 -11.74863 -11.63035 -11.43261 -11.39190 -10.84183 -10.71174 -10.24938 -10.09993 -9.57364 -9.37842 -8.89418 -8.16284 -5.47816 0.52458 1.00266 1.29860 1.43111 1.43541 1.53131 2.13809 2.41829 2.42033 3.01179 3.02021 3.10753 3.31598 3.36991 3.54819 3.84592 3.93065 3.98855 4.09645 4.12359 4.17673 4.23786 4.25672 4.32516 4.42025 4.45806 4.46597 4.47855 4.53399 4.61759 4.70181 4.72593 4.73015 4.74588 4.82714 4.91606 4.94050 4.99406 5.03515 5.08550 5.18737 5.23233 5.29861 5.39349 5.46578 5.82935 5.89684 6.07463 6.09089 6.20282 6.49385 6.69244 6.90112 7.34956 7.61335 8.03834 9.03553 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021808 B = 0.001839 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.597735 B =15225.665207 C =15939.684508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.357 5.357 3 C 0.125 3.875 4 C -0.316 4.316 5 C 0.592 3.408 6 O -0.583 6.583 7 N -0.712 5.712 8 C 0.133 3.867 9 C 0.054 3.946 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.145 3.855 13 N -0.624 5.624 14 C -0.248 4.248 15 H 0.052 0.948 16 C -0.037 4.037 17 N -0.957 5.957 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.312 1.312 21 H -0.267 1.267 22 C 0.122 3.878 23 C 0.057 3.943 24 C 0.146 3.854 25 C -0.104 4.104 26 C -0.155 4.155 27 C -0.155 4.155 28 N -0.326 5.326 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.126 0.874 32 H 0.232 0.768 33 H 0.413 0.587 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.049 0.951 38 H 0.026 0.974 39 H 0.093 0.907 40 H 0.034 0.966 41 H 0.059 0.941 42 H 0.262 0.738 43 H 0.033 0.967 44 H 0.056 0.944 45 H 0.101 0.899 46 H 0.029 0.971 47 H 0.120 0.880 48 H 0.097 0.903 49 H 0.114 0.886 50 H 0.110 0.890 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.668 -25.999 -5.514 35.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.134 5.134 3 C -0.028 4.028 4 C -0.332 4.332 5 C 0.381 3.619 6 O -0.463 6.463 7 N -0.365 5.365 8 C 0.009 3.991 9 C -0.074 4.074 10 N -0.265 5.265 11 C -0.079 4.079 12 C 0.020 3.980 13 N -0.349 5.349 14 C -0.378 4.378 15 H 0.069 0.931 16 C -0.232 4.232 17 N -0.603 5.603 18 Si 0.778 3.222 19 H -0.194 1.194 20 H -0.241 1.241 21 H -0.192 1.192 22 C -0.003 4.003 23 C -0.073 4.073 24 C -0.020 4.020 25 C -0.124 4.124 26 C -0.192 4.192 27 C -0.193 4.193 28 N -0.148 5.148 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.248 0.752 33 H 0.250 0.750 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.111 0.889 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.048 0.952 47 H 0.137 0.863 48 H 0.116 0.884 49 H 0.132 0.868 50 H 0.129 0.871 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.571 -27.341 -5.887 36.576 hybrid contribution 0.299 1.840 0.148 1.870 sum -23.272 -25.501 -5.739 34.998 Atomic orbital electron populations 1.22439 0.70635 1.06774 1.05444 1.48697 1.08557 1.03129 1.53044 1.23705 0.88860 0.95527 0.94695 1.20184 0.93458 0.93401 1.26108 1.17453 0.87624 0.81831 0.74973 1.90734 1.28617 1.74501 1.52484 1.45501 1.10356 1.04928 1.75676 1.21100 0.87215 0.88878 1.01897 1.22199 0.91540 0.90891 1.02803 1.61746 1.22374 1.07311 1.35105 1.22531 0.95145 1.00447 0.89763 1.21175 0.95150 0.83142 0.98567 1.44565 1.55292 1.02126 1.32911 1.18871 1.36301 0.90008 0.92616 0.93067 1.25895 1.00107 0.95177 1.01983 1.69965 1.54903 0.98459 1.37019 0.85883 0.77500 0.76557 0.82212 1.19386 1.24055 1.19195 1.21483 0.91354 0.97962 0.89494 1.22438 0.96477 0.87259 1.01080 1.21578 0.92320 0.92504 0.95638 1.20491 0.95046 0.90162 1.06724 1.23033 1.03377 0.93513 0.99279 1.22988 1.03484 1.01337 0.91507 1.77074 1.01195 1.08909 1.27576 0.88737 0.88874 0.85566 0.75153 0.74971 0.92612 0.92051 0.88103 0.93254 0.95521 0.88868 0.94839 0.92247 0.92935 0.94885 0.92639 0.88130 0.95222 0.86256 0.88409 0.86809 0.87123 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.16 11.44 127.77 1.46 1.63 16 2 N -0.36 -4.26 3.98 -367.77 -1.46 -5.73 16 3 C 0.13 1.30 10.99 84.27 0.93 2.22 16 4 C -0.32 -6.21 6.13 -20.15 -0.12 -6.33 16 5 C 0.59 13.83 7.81 86.67 0.68 14.50 16 6 O -0.58 -18.66 15.00 -4.04 -0.06 -18.72 16 7 N -0.71 -11.91 5.54 -466.37 -2.59 -14.50 16 8 C 0.13 2.80 5.60 86.38 0.48 3.29 16 9 C 0.05 1.04 5.08 86.30 0.44 1.48 16 10 N -0.54 -15.43 4.63 -895.22 -4.14 -19.58 16 11 C 0.05 1.58 5.46 86.38 0.47 2.05 16 12 C 0.14 5.75 6.69 86.35 0.58 6.32 16 13 N -0.62 -29.83 2.82 -698.13 -1.97 -31.80 16 14 C -0.25 -14.28 10.08 84.03 0.85 -13.44 16 15 H 0.05 3.22 8.05 -2.91 -0.02 3.19 16 16 C -0.04 -2.18 5.24 84.86 0.44 -1.74 16 17 N -0.96 -60.42 13.97 21.65 0.30 -60.11 16 18 Si 0.95 46.94 24.31 68.60 1.67 48.60 16 19 H -0.27 -12.17 6.58 99.48 0.65 -11.52 16 20 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 21 H -0.27 -12.95 6.61 99.48 0.66 -12.29 16 22 C 0.12 5.13 4.35 86.35 0.38 5.51 16 23 C 0.06 1.80 5.62 86.38 0.49 2.28 16 24 C 0.15 3.28 6.80 43.52 0.30 3.58 16 25 C -0.10 -2.32 5.65 -11.54 -0.07 -2.38 16 26 C -0.15 -2.64 10.14 30.59 0.31 -2.33 16 27 C -0.15 -2.83 10.23 30.59 0.31 -2.51 16 28 N -0.33 -6.52 12.08 -46.67 -0.56 -7.08 16 29 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.13 -0.58 8.14 -2.39 -0.02 -0.59 16 32 H 0.23 -0.17 7.46 -2.91 -0.02 -0.20 16 33 H 0.41 3.49 7.40 -92.71 -0.69 2.80 16 34 H 0.06 1.36 6.40 -2.39 -0.02 1.35 16 35 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.10 1.52 7.97 -2.39 -0.02 1.50 16 37 H 0.05 0.87 8.13 -2.38 -0.02 0.86 16 38 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 2.53 6.16 -2.39 -0.01 2.52 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 42 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.03 1.40 6.94 -2.39 -0.02 1.38 16 44 H 0.06 2.54 4.61 -2.39 -0.01 2.52 16 45 H 0.10 2.52 7.99 -2.38 -0.02 2.50 16 46 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.12 3.10 6.73 -2.39 -0.02 3.09 16 48 H 0.10 1.70 7.90 -2.39 -0.02 1.68 16 49 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 51 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -83.22 403.36 -0.74 -83.97 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.15 Total: 10.82 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 7.92 Total: 14.12 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -10.42 Total: -138.79 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.06 Total: -18.72 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.67 Total: 48.60 kcal Total: -83.22 -0.74 -83.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752366312.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.057 kcal (2) G-P(sol) polarization free energy of solvation -83.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds