Wall clock time and date at job start Wed Apr 1 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39935 * 125.75079 * 2 1 4 4 C 1.30445 * 108.89716 * 179.74128 * 3 2 1 5 5 C 1.41293 * 108.02060 * 0.41238 * 4 3 2 6 6 C 1.47428 * 126.41634 * 179.85675 * 5 4 3 7 7 O 1.21599 * 120.00276 * 179.68720 * 6 5 4 8 8 N 1.34782 * 119.99558 * 359.68268 * 6 5 4 9 9 C 1.46505 * 119.99646 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46934 * 180.02562 * 9 8 6 11 11 N 1.46908 * 109.46972 * 180.02562 * 10 9 8 12 12 C 1.46901 * 110.99960 * 170.00305 * 11 10 9 13 13 C 1.53230 * 109.34068 * 172.74579 * 12 11 10 14 14 N 1.47085 * 108.52091 * 53.83123 * 13 12 11 15 15 C 1.36933 * 120.88059 * 128.79330 * 14 13 12 16 16 H 1.08003 * 119.99882 * 209.26047 * 15 14 13 17 17 C 1.38807 * 120.00452 * 29.26583 * 15 14 13 18 18 N 1.31625 * 119.99902 * 15.56556 * 17 15 14 19 19 Si 1.86797 * 120.00334 * 195.57211 * 17 15 14 20 20 H 1.48493 * 109.47247 * 59.99287 * 19 17 15 21 21 H 1.48504 * 109.47366 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46768 * 299.99623 * 19 17 15 23 23 C 1.47082 * 118.23613 * 308.81318 * 14 13 12 24 24 C 1.46894 * 110.99893 * 45.69947 * 11 10 9 25 25 C 1.34255 * 125.75542 * 180.02562 * 2 1 3 26 26 C 1.50698 * 126.29116 * 0.02562 * 25 2 1 27 27 C 1.52996 * 117.49744 * 312.62732 * 26 25 2 28 28 C 1.53000 * 117.49746 * 243.96917 * 26 25 2 29 29 H 1.09007 * 109.46727 * 272.81698 * 1 2 3 30 30 H 1.08994 * 109.47520 * 32.81868 * 1 2 3 31 31 H 1.09001 * 109.47238 * 152.82192 * 1 2 3 32 32 H 1.08003 * 125.99386 * 180.27200 * 4 3 2 33 33 H 0.96989 * 120.00445 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.46730 * 60.00418 * 9 8 6 35 35 H 1.08996 * 109.47595 * 300.00623 * 9 8 6 36 36 H 1.09003 * 109.47106 * 60.00605 * 10 9 8 37 37 H 1.08995 * 109.47677 * 300.00164 * 10 9 8 38 38 H 1.09000 * 109.49308 * 52.78504 * 12 11 10 39 39 H 1.08997 * 109.49484 * 292.71018 * 12 11 10 40 40 H 1.08996 * 109.63076 * 173.53955 * 13 12 11 41 41 H 1.09005 * 109.63235 * 293.92567 * 13 12 11 42 42 H 0.97001 * 120.00184 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.62689 * 170.89812 * 23 14 13 44 44 H 1.09003 * 109.62858 * 291.47568 * 23 14 13 45 45 H 1.09005 * 109.49381 * 67.29515 * 24 11 10 46 46 H 1.09000 * 109.52013 * 307.22780 * 24 11 10 47 47 H 1.08999 * 115.55479 * 98.30558 * 26 25 2 48 48 H 1.08994 * 117.50241 * 0.02562 * 27 26 25 49 49 H 1.09010 * 117.49488 * 145.02370 * 27 26 25 50 50 H 1.09001 * 117.50081 * 214.98063 * 28 26 25 51 51 H 1.09004 * 117.49685 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1357 0.0000 4 6 3.5310 0.7575 0.0056 5 6 3.5598 -0.6551 -0.0003 6 6 4.7638 -1.5060 0.0001 7 8 4.6526 -2.7169 0.0004 8 7 5.9877 -0.9416 0.0000 9 6 7.1842 -1.7871 0.0009 10 6 8.4331 -0.9033 0.0012 11 7 9.6329 -1.7511 0.0015 12 6 10.8423 -0.9519 -0.2363 13 6 12.0797 -1.8361 -0.0492 14 7 11.9400 -3.0228 -0.9068 15 6 12.9439 -3.3953 -1.7604 16 1 12.7082 -3.9174 -2.6760 17 6 14.2643 -3.1021 -1.4489 18 7 14.5890 -2.7517 -0.2223 19 14 15.5807 -3.2044 -2.7703 20 1 15.2533 -2.2610 -3.8692 21 1 16.8978 -2.8451 -2.1859 22 1 15.6374 -4.5882 -3.3063 23 6 10.6932 -3.7986 -0.8235 24 6 9.5102 -2.8371 -0.9800 25 6 2.2495 -1.0895 -0.0005 26 6 1.7850 -2.5231 -0.0017 27 6 0.6925 -2.9125 0.9962 28 6 2.1334 -3.3796 1.2173 29 1 -0.3633 0.0505 1.0265 30 1 -0.3634 0.8636 -0.5569 31 1 -0.3634 -0.9142 -0.4694 32 1 4.3918 1.4097 0.0112 33 1 6.0764 0.0243 0.0000 34 1 7.1846 -2.4170 -0.8887 35 1 7.1842 -2.4158 0.8912 36 1 8.4325 -0.2737 0.8910 37 1 8.4334 -0.2743 -0.8890 38 1 10.8763 -0.1241 0.4719 39 1 10.8254 -0.5603 -1.2534 40 1 12.9731 -1.2809 -0.3352 41 1 12.1570 -2.1418 0.9942 42 1 15.5118 -2.5472 -0.0045 43 1 10.6698 -4.5409 -1.6214 44 1 10.6352 -4.2958 0.1448 45 1 9.5119 -2.4194 -1.9869 46 1 8.5782 -3.3767 -0.8117 47 1 1.7755 -3.0135 -0.9751 48 1 0.3095 -2.1318 1.6532 49 1 -0.0355 -3.6594 0.6793 50 1 2.3527 -4.4334 1.0459 51 1 2.6982 -2.9060 2.0203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752382126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:15 Heat of formation + Delta-G solvation = 108.675011 kcal Electronic energy + Delta-G solvation = -30197.680199 eV Core-core repulsion = 26135.838672 eV Total energy + Delta-G solvation = -4061.841527 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.89272 -39.30777 -38.13831 -37.41216 -35.31496 -33.96753 -33.59467 -31.36863 -30.66771 -30.11040 -28.80174 -27.39572 -25.81997 -24.03971 -23.46360 -22.96331 -22.53994 -22.18451 -21.23452 -20.55994 -19.65625 -19.05545 -17.88989 -16.82702 -16.60788 -15.97929 -15.95690 -15.43203 -15.32515 -14.94342 -14.86195 -14.50538 -14.32064 -14.13228 -14.04276 -13.58413 -13.49439 -13.27286 -13.10867 -13.05977 -12.89266 -12.41263 -12.36902 -11.89410 -11.61727 -11.56794 -11.34302 -11.27843 -11.00628 -10.97790 -10.69365 -10.63452 -10.47399 -10.26199 -10.04673 -9.88861 -9.78246 -9.72138 -9.57464 -9.13393 -8.81845 -8.47535 -7.82718 -6.59577 -5.75340 -3.18845 1.18053 1.87025 1.90398 3.14637 3.31350 3.37487 3.40319 3.45701 3.46957 3.93930 4.04816 4.41450 4.47982 4.53838 4.55598 4.61218 4.64094 4.75973 4.87533 4.90468 4.99468 5.11405 5.17608 5.20343 5.42396 5.45738 5.49682 5.54537 5.57671 5.68665 5.80527 5.87724 5.94420 5.98841 6.04474 6.10126 6.18400 6.26841 6.34241 6.40943 6.45318 6.56936 6.73118 6.98447 7.16249 7.25480 7.49705 7.59783 7.65909 7.71746 7.84015 8.27302 8.48201 9.24749 9.87445 10.47738 11.33572 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.001773 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.072005 B =15790.648199 C =16318.107133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.359 5.359 3 N -0.297 5.297 4 C 0.082 3.918 5 C -0.288 4.288 6 C 0.593 3.407 7 O -0.537 6.537 8 N -0.727 5.727 9 C 0.120 3.880 10 C 0.044 3.956 11 N -0.527 5.527 12 C 0.037 3.963 13 C 0.180 3.820 14 N -0.595 5.595 15 C -0.253 4.253 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.903 3.097 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.148 3.852 24 C 0.035 3.965 25 C 0.186 3.814 26 C -0.101 4.101 27 C -0.187 4.187 28 C -0.122 4.122 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.190 0.810 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.085 0.915 41 H 0.028 0.972 42 H 0.254 0.746 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.028 0.972 46 H 0.070 0.930 47 H 0.130 0.870 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.106 0.894 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.281 6.559 2.340 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.138 5.138 3 N -0.116 5.116 4 C -0.106 4.106 5 C -0.303 4.303 6 C 0.380 3.620 7 O -0.415 6.415 8 N -0.379 5.379 9 C -0.004 4.004 10 C -0.085 4.085 11 N -0.253 5.253 12 C -0.092 4.092 13 C 0.054 3.946 14 N -0.318 5.318 15 C -0.383 4.383 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.022 3.978 24 C -0.095 4.095 25 C 0.053 3.947 26 C -0.121 4.121 27 C -0.224 4.224 28 C -0.160 4.160 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.207 0.793 33 H 0.229 0.771 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.103 0.897 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.148 0.852 48 H 0.111 0.889 49 H 0.122 0.878 50 H 0.124 0.876 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -31.071 6.524 2.855 31.876 hybrid contribution 1.292 0.429 -1.489 2.017 sum -29.779 6.953 1.367 30.611 Atomic orbital electron populations 1.22018 0.73705 1.04942 1.03835 1.48335 1.07039 1.03216 1.55204 1.77205 1.01948 1.07227 1.25239 1.24041 0.95402 0.93856 0.97299 1.20003 0.92924 0.93367 1.23976 1.17115 0.81922 0.87025 0.75971 1.90779 1.86623 1.13798 1.50271 1.45723 1.05568 1.10234 1.76341 1.21524 0.82388 0.93261 1.03193 1.22260 0.90122 0.95395 1.00720 1.62020 1.01180 1.11659 1.50435 1.22913 0.91810 0.96355 0.98168 1.20808 0.92948 0.87016 0.93874 1.44082 1.14409 1.26428 1.46899 1.19128 0.85442 1.35222 0.98499 0.91843 1.25094 0.97210 1.01499 0.95786 1.70013 1.17541 1.50491 1.16688 0.86366 0.81030 0.78031 0.81287 1.21117 1.21626 1.20871 1.20994 0.85773 0.92309 0.98754 1.22798 1.00090 0.93875 0.92704 1.20561 0.89793 0.89091 0.95222 1.20454 1.04957 0.88931 0.97760 1.23224 0.93091 1.03960 1.02106 1.22807 0.95589 1.00190 0.97404 0.90317 0.88955 0.88812 0.79279 0.77054 0.90938 0.90480 0.90671 0.94986 0.92070 0.95597 0.89732 0.95408 0.93581 0.92610 0.95566 0.95399 0.91182 0.85227 0.88949 0.87790 0.87558 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 10.21 59.85 0.61 1.04 16 2 N -0.36 -3.14 3.98 -63.34 -0.25 -3.40 16 3 N -0.30 -3.05 12.50 30.86 0.39 -2.67 16 4 C 0.08 0.76 11.50 -16.98 -0.20 0.56 16 5 C -0.29 -3.12 6.13 -105.07 -0.64 -3.76 16 6 C 0.59 7.40 7.81 -12.52 -0.10 7.31 16 7 O -0.54 -8.18 14.61 5.28 0.08 -8.10 16 8 N -0.73 -7.89 5.55 -61.38 -0.34 -8.23 16 9 C 0.12 1.54 4.93 -4.04 -0.02 1.52 16 10 C 0.04 0.59 5.38 -3.82 -0.02 0.57 16 11 N -0.53 -9.27 4.78 -234.32 -1.12 -10.39 16 12 C 0.04 0.71 5.58 -3.70 -0.02 0.69 16 13 C 0.18 4.35 5.39 -3.60 -0.02 4.33 16 14 N -0.59 -15.26 3.03 -172.01 -0.52 -15.78 16 15 C -0.25 -7.05 9.61 -15.06 -0.14 -7.19 16 16 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 17 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 18 N -0.90 -26.41 11.26 55.49 0.63 -25.79 16 19 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.15 3.23 6.69 -3.60 -0.02 3.21 16 24 C 0.03 0.63 5.04 -3.70 -0.02 0.61 16 25 C 0.19 1.82 6.45 -81.60 -0.53 1.29 16 26 C -0.10 -0.83 4.80 -91.77 -0.44 -1.27 16 27 C -0.19 -1.06 9.05 -26.70 -0.24 -1.30 16 28 C -0.12 -1.03 8.88 -26.69 -0.24 -1.26 16 29 H 0.08 0.25 8.08 -51.92 -0.42 -0.17 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.26 7.18 -51.93 -0.37 -0.11 16 32 H 0.19 1.11 7.50 -52.48 -0.39 0.72 16 33 H 0.40 3.19 7.43 -40.82 -0.30 2.89 16 34 H 0.07 1.03 6.18 -51.93 -0.32 0.71 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 2.25 6.28 -51.93 -0.33 1.92 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 1.13 5.73 -51.93 -0.30 0.83 16 47 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 0.48 7.51 -51.93 -0.39 0.09 16 49 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 50 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -34.30 404.78 -10.48 -44.78 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.28 Total: 0.35 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -2.13 Total: 6.31 kcal Atomic # 7 Polarization: -65.03 SS G_CDS: -1.22 Total: -66.25 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.30 -10.48 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752382126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.453 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds