Wall clock time and date at job start Wed Apr 1 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39935 * 125.75079 * 2 1 4 4 C 1.30445 * 108.89716 * 179.74128 * 3 2 1 5 5 C 1.41293 * 108.02060 * 0.41238 * 4 3 2 6 6 C 1.47428 * 126.41634 * 179.85675 * 5 4 3 7 7 O 1.21599 * 120.00276 * 179.68720 * 6 5 4 8 8 N 1.34782 * 119.99558 * 359.68268 * 6 5 4 9 9 C 1.46505 * 119.99646 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46934 * 180.02562 * 9 8 6 11 11 N 1.46908 * 109.46972 * 180.02562 * 10 9 8 12 12 C 1.46901 * 110.99960 * 170.00305 * 11 10 9 13 13 C 1.53230 * 109.34068 * 172.74579 * 12 11 10 14 14 N 1.47085 * 108.52091 * 53.83123 * 13 12 11 15 15 C 1.36933 * 120.88059 * 128.79330 * 14 13 12 16 16 H 1.08003 * 119.99882 * 209.26047 * 15 14 13 17 17 C 1.38807 * 120.00452 * 29.26583 * 15 14 13 18 18 N 1.31625 * 119.99902 * 15.56556 * 17 15 14 19 19 Si 1.86797 * 120.00334 * 195.57211 * 17 15 14 20 20 H 1.48493 * 109.47247 * 59.99287 * 19 17 15 21 21 H 1.48504 * 109.47366 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46768 * 299.99623 * 19 17 15 23 23 C 1.47082 * 118.23613 * 308.81318 * 14 13 12 24 24 C 1.46894 * 110.99893 * 45.69947 * 11 10 9 25 25 C 1.34255 * 125.75542 * 180.02562 * 2 1 3 26 26 C 1.50698 * 126.29116 * 0.02562 * 25 2 1 27 27 C 1.52996 * 117.49744 * 312.62732 * 26 25 2 28 28 C 1.53000 * 117.49746 * 243.96917 * 26 25 2 29 29 H 1.09007 * 109.46727 * 272.81698 * 1 2 3 30 30 H 1.08994 * 109.47520 * 32.81868 * 1 2 3 31 31 H 1.09001 * 109.47238 * 152.82192 * 1 2 3 32 32 H 1.08003 * 125.99386 * 180.27200 * 4 3 2 33 33 H 0.96989 * 120.00445 * 0.02562 * 8 6 5 34 34 H 1.09003 * 109.46730 * 60.00418 * 9 8 6 35 35 H 1.08996 * 109.47595 * 300.00623 * 9 8 6 36 36 H 1.09003 * 109.47106 * 60.00605 * 10 9 8 37 37 H 1.08995 * 109.47677 * 300.00164 * 10 9 8 38 38 H 1.09000 * 109.49308 * 52.78504 * 12 11 10 39 39 H 1.08997 * 109.49484 * 292.71018 * 12 11 10 40 40 H 1.08996 * 109.63076 * 173.53955 * 13 12 11 41 41 H 1.09005 * 109.63235 * 293.92567 * 13 12 11 42 42 H 0.97001 * 120.00184 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.62689 * 170.89812 * 23 14 13 44 44 H 1.09003 * 109.62858 * 291.47568 * 23 14 13 45 45 H 1.09005 * 109.49381 * 67.29515 * 24 11 10 46 46 H 1.09000 * 109.52013 * 307.22780 * 24 11 10 47 47 H 1.08999 * 115.55479 * 98.30558 * 26 25 2 48 48 H 1.08994 * 117.50241 * 0.02562 * 27 26 25 49 49 H 1.09010 * 117.49488 * 145.02370 * 27 26 25 50 50 H 1.09001 * 117.50081 * 214.98063 * 28 26 25 51 51 H 1.09004 * 117.49685 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2826 1.1357 0.0000 4 6 3.5310 0.7575 0.0056 5 6 3.5598 -0.6551 -0.0003 6 6 4.7638 -1.5060 0.0001 7 8 4.6526 -2.7169 0.0004 8 7 5.9877 -0.9416 0.0000 9 6 7.1842 -1.7871 0.0009 10 6 8.4331 -0.9033 0.0012 11 7 9.6329 -1.7511 0.0015 12 6 10.8423 -0.9519 -0.2363 13 6 12.0797 -1.8361 -0.0492 14 7 11.9400 -3.0228 -0.9068 15 6 12.9439 -3.3953 -1.7604 16 1 12.7082 -3.9174 -2.6760 17 6 14.2643 -3.1021 -1.4489 18 7 14.5890 -2.7517 -0.2223 19 14 15.5807 -3.2044 -2.7703 20 1 15.2533 -2.2610 -3.8692 21 1 16.8978 -2.8451 -2.1859 22 1 15.6374 -4.5882 -3.3063 23 6 10.6932 -3.7986 -0.8235 24 6 9.5102 -2.8371 -0.9800 25 6 2.2495 -1.0895 -0.0005 26 6 1.7850 -2.5231 -0.0017 27 6 0.6925 -2.9125 0.9962 28 6 2.1334 -3.3796 1.2173 29 1 -0.3633 0.0505 1.0265 30 1 -0.3634 0.8636 -0.5569 31 1 -0.3634 -0.9142 -0.4694 32 1 4.3918 1.4097 0.0112 33 1 6.0764 0.0243 0.0000 34 1 7.1846 -2.4170 -0.8887 35 1 7.1842 -2.4158 0.8912 36 1 8.4325 -0.2737 0.8910 37 1 8.4334 -0.2743 -0.8890 38 1 10.8763 -0.1241 0.4719 39 1 10.8254 -0.5603 -1.2534 40 1 12.9731 -1.2809 -0.3352 41 1 12.1570 -2.1418 0.9942 42 1 15.5118 -2.5472 -0.0045 43 1 10.6698 -4.5409 -1.6214 44 1 10.6352 -4.2958 0.1448 45 1 9.5119 -2.4194 -1.9869 46 1 8.5782 -3.3767 -0.8117 47 1 1.7755 -3.0135 -0.9751 48 1 0.3095 -2.1318 1.6532 49 1 -0.0355 -3.6594 0.6793 50 1 2.3527 -4.4334 1.0459 51 1 2.6982 -2.9060 2.0203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752382126.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:14 Heat of formation + Delta-G solvation = 84.438800 kcal Electronic energy + Delta-G solvation = -30198.731159 eV Core-core repulsion = 26135.838672 eV Total energy + Delta-G solvation = -4062.892488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.57399 -40.36247 -39.57484 -38.00515 -36.78492 -35.28557 -34.28919 -33.22918 -31.85927 -31.33323 -30.10708 -28.29798 -27.24458 -25.29973 -24.62792 -24.12087 -23.53986 -23.05428 -22.49639 -21.33413 -20.83232 -20.35351 -18.77474 -18.59617 -17.32836 -17.13595 -16.84905 -16.67611 -16.40219 -16.01590 -15.87438 -15.66747 -15.44138 -15.34538 -15.25313 -14.98541 -14.91919 -14.68636 -14.32476 -14.02042 -13.55829 -13.48686 -13.13266 -13.05668 -12.97016 -12.91069 -12.57417 -12.42303 -12.38083 -12.32079 -12.26335 -12.01531 -11.90320 -11.57885 -11.49370 -11.40424 -11.23108 -10.83577 -10.57642 -10.40737 -10.09187 -9.59418 -9.26283 -8.63951 -7.87005 -5.34479 0.45494 1.13918 1.34508 1.47183 1.49230 1.56396 2.20889 2.48310 2.51378 2.75168 3.12373 3.28699 3.35861 3.50881 3.69310 3.84179 3.89172 3.94496 4.04138 4.11559 4.21643 4.25629 4.31960 4.36004 4.37302 4.48116 4.50352 4.58872 4.63604 4.64612 4.72429 4.73930 4.79042 4.88971 4.97732 4.99049 4.99425 5.06774 5.08687 5.20751 5.21046 5.36317 5.37473 5.49134 5.62325 5.69437 5.82327 6.15408 6.24135 6.39223 6.47462 6.68559 7.14610 7.36845 7.84099 8.39992 9.19616 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026812 B = 0.001773 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.072005 B =15790.648199 C =16318.107133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.356 5.356 3 N -0.321 5.321 4 C 0.085 3.915 5 C -0.313 4.313 6 C 0.591 3.409 7 O -0.571 6.571 8 N -0.715 5.715 9 C 0.131 3.869 10 C 0.052 3.948 11 N -0.539 5.539 12 C 0.053 3.947 13 C 0.185 3.815 14 N -0.614 5.614 15 C -0.267 4.267 16 H 0.065 0.935 17 C -0.049 4.049 18 N -0.934 5.934 19 Si 0.970 3.030 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.276 1.276 23 C 0.143 3.857 24 C 0.049 3.951 25 C 0.183 3.817 26 C -0.113 4.113 27 C -0.152 4.152 28 C -0.142 4.142 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.218 0.782 33 H 0.412 0.588 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.087 0.913 39 H 0.023 0.977 40 H 0.054 0.946 41 H -0.001 1.001 42 H 0.251 0.749 43 H 0.058 0.942 44 H 0.015 0.985 45 H 0.025 0.975 46 H 0.093 0.907 47 H 0.129 0.871 48 H 0.102 0.898 49 H 0.128 0.872 50 H 0.102 0.898 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.731 7.744 1.698 33.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.134 5.134 3 N -0.140 5.140 4 C -0.102 4.102 5 C -0.328 4.328 6 C 0.379 3.621 7 O -0.452 6.452 8 N -0.368 5.368 9 C 0.007 3.993 10 C -0.076 4.076 11 N -0.265 5.265 12 C -0.076 4.076 13 C 0.059 3.941 14 N -0.338 5.338 15 C -0.397 4.397 16 H 0.082 0.918 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.798 3.202 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.202 1.202 23 C 0.017 3.983 24 C -0.080 4.080 25 C 0.049 3.951 26 C -0.133 4.133 27 C -0.189 4.189 28 C -0.180 4.180 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.234 0.766 33 H 0.248 0.752 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.018 0.982 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.043 0.957 46 H 0.111 0.889 47 H 0.147 0.853 48 H 0.120 0.880 49 H 0.146 0.854 50 H 0.120 0.880 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -33.574 7.751 2.209 34.528 hybrid contribution 1.954 0.021 -1.242 2.315 sum -31.620 7.772 0.967 32.576 Atomic orbital electron populations 1.22403 0.71455 1.06394 1.05299 1.48653 1.08295 1.02457 1.54032 1.77162 1.02492 1.08241 1.26109 1.24468 0.96053 0.93488 0.96144 1.20009 0.92752 0.94030 1.26053 1.17394 0.82639 0.86801 0.75253 1.90758 1.87127 1.15299 1.51971 1.45527 1.04549 1.10901 1.75808 1.21239 0.82967 0.93171 1.01914 1.22249 0.88049 0.94926 1.02334 1.61914 1.02203 1.12203 1.50183 1.22584 0.90432 0.95818 0.98759 1.20599 0.94431 0.87154 0.91874 1.44370 1.15136 1.27505 1.46779 1.19462 0.86380 1.34950 0.98951 0.91778 1.25875 0.99233 1.01652 0.97741 1.70176 1.17626 1.51706 1.18503 0.85310 0.78012 0.78213 0.78688 1.20364 1.21845 1.20171 1.21132 0.85826 0.93143 0.98172 1.22579 0.99077 0.93602 0.92745 1.20812 0.89908 0.89963 0.94427 1.20492 1.06781 0.88122 0.97869 1.23314 0.91830 1.03768 0.99950 1.22732 0.98088 0.99878 0.97255 0.88734 0.88100 0.86939 0.76573 0.75201 0.92175 0.91911 0.88628 0.93592 0.89457 0.95858 0.92731 0.98243 0.93999 0.92382 0.96740 0.95705 0.88914 0.85300 0.87951 0.85430 0.87967 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.21 127.77 1.30 1.84 16 2 N -0.36 -5.60 3.98 -354.32 -1.41 -7.01 16 3 N -0.32 -6.05 12.50 -56.27 -0.70 -6.75 16 4 C 0.09 1.44 11.50 85.65 0.99 2.43 16 5 C -0.31 -6.49 6.13 -20.15 -0.12 -6.61 16 6 C 0.59 14.38 7.81 86.66 0.68 15.05 16 7 O -0.57 -17.52 14.61 -4.03 -0.06 -17.58 16 8 N -0.72 -14.35 5.55 -466.36 -2.59 -16.93 16 9 C 0.13 3.17 4.93 86.38 0.43 3.59 16 10 C 0.05 1.26 5.38 86.30 0.46 1.73 16 11 N -0.54 -18.17 4.78 -895.26 -4.28 -22.45 16 12 C 0.05 2.01 5.58 86.38 0.48 2.49 16 13 C 0.19 9.19 5.39 86.35 0.47 9.65 16 14 N -0.61 -32.10 3.03 -698.13 -2.11 -34.22 16 15 C -0.27 -15.11 9.61 84.03 0.81 -14.31 16 16 H 0.06 3.53 7.88 -2.91 -0.02 3.51 16 17 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 18 N -0.93 -56.16 11.26 21.65 0.24 -55.91 16 19 Si 0.97 45.42 29.58 68.60 2.03 47.45 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C 0.14 6.29 6.69 86.35 0.58 6.86 16 24 C 0.05 1.74 5.04 86.38 0.44 2.17 16 25 C 0.18 3.38 6.45 42.14 0.27 3.65 16 26 C -0.11 -1.74 4.80 -11.54 -0.06 -1.80 16 27 C -0.15 -1.38 9.05 30.62 0.28 -1.11 16 28 C -0.14 -2.34 8.88 30.62 0.27 -2.07 16 29 H 0.09 0.33 8.08 -2.38 -0.02 0.31 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.29 7.18 -2.39 -0.02 0.28 16 32 H 0.22 2.00 7.50 -2.91 -0.02 1.98 16 33 H 0.41 5.59 7.43 -92.72 -0.69 4.90 16 34 H 0.06 1.62 6.18 -2.39 -0.01 1.61 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.04 8.08 -2.39 -0.02 1.02 16 38 H 0.09 2.83 8.11 -2.39 -0.02 2.81 16 39 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 3.00 6.28 -2.39 -0.02 2.99 16 41 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.06 2.46 7.95 -2.39 -0.02 2.45 16 44 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.09 2.88 5.73 -2.39 -0.01 2.87 16 47 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.10 0.75 7.51 -2.39 -0.02 0.74 16 49 H 0.13 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 51 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -76.40 404.78 -0.94 -77.34 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.25 Total: 14.86 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 7.69 Total: 21.19 kcal Atomic # 7 Polarization: -132.42 SS G_CDS: -10.85 Total: -143.27 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.06 Total: -17.58 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.40 -0.94 -77.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752382126.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.782 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds