Wall clock time and date at job start Wed Apr 1 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36735 * 127.13829 * 2 1 4 4 C 1.50704 * 126.34439 * 0.05983 * 3 2 1 5 5 H 1.09000 * 108.56764 * 2.04773 * 4 3 2 6 6 C 1.51777 * 108.61450 * 244.24090 * 4 3 2 7 7 C 1.52936 * 110.88464 * 171.89142 * 6 4 3 8 8 N 1.47199 * 108.69040 * 86.44880 * 7 6 4 9 9 C 1.33366 * 120.43497 * 288.05102 * 8 7 6 10 10 O 1.21281 * 119.89757 * 180.29413 * 9 8 7 11 11 C 1.51424 * 120.21156 * 0.27663 * 9 8 7 12 12 C 1.51797 * 108.61329 * 119.97894 * 4 3 2 13 13 N 1.30288 * 107.30602 * 180.02562 * 3 2 1 14 14 N 1.28527 * 110.05517 * 0.02562 * 13 3 2 15 15 C 1.31214 * 109.85861 * 359.97438 * 14 13 3 16 16 N 1.38589 * 126.47321 * 179.74117 * 15 14 13 17 17 C 1.46855 * 110.99940 * 124.23388 * 16 15 14 18 18 C 1.53034 * 109.51826 * 174.16074 * 17 16 15 19 19 C 1.53114 * 109.28127 * 59.18225 * 18 17 16 20 20 C 1.50697 * 109.52483 * 182.43839 * 19 18 17 21 21 H 1.08001 * 120.00320 * 119.68206 * 20 19 18 22 22 C 1.37885 * 119.99814 * 299.68121 * 20 19 18 23 23 N 1.31515 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99992 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47020 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46973 * 119.99804 * 24 22 20 27 27 H 1.48498 * 109.47122 * 240.00130 * 24 22 20 28 28 C 1.53121 * 109.15828 * 302.34046 * 19 18 17 29 29 C 1.46846 * 111.00152 * 0.02562 * 16 15 14 30 30 H 1.08993 * 109.47504 * 270.00102 * 1 2 3 31 31 H 1.09004 * 109.46582 * 29.99503 * 1 2 3 32 32 H 1.08998 * 109.47068 * 149.99110 * 1 2 3 33 33 H 1.09002 * 109.19343 * 292.24581 * 6 4 3 34 34 H 1.08999 * 109.19586 * 51.52059 * 6 4 3 35 35 H 1.08999 * 109.59999 * 326.68948 * 7 6 4 36 36 H 1.09002 * 109.59371 * 206.21080 * 7 6 4 37 37 H 0.97007 * 119.78243 * 108.02703 * 8 7 6 38 38 H 1.09007 * 109.63341 * 311.51627 * 11 9 8 39 39 H 1.09000 * 109.79945 * 191.01860 * 11 9 8 40 40 H 1.09000 * 109.22155 * 308.25716 * 12 4 3 41 41 H 1.09002 * 109.22265 * 67.65015 * 12 4 3 42 42 H 1.09001 * 109.46129 * 294.17620 * 17 16 15 43 43 H 1.09000 * 109.45977 * 54.14394 * 17 16 15 44 44 H 1.08998 * 109.50577 * 299.23659 * 18 17 16 45 45 H 1.09007 * 109.49965 * 179.11757 * 18 17 16 46 46 H 1.08997 * 109.57817 * 62.27637 * 19 18 17 47 47 H 0.96992 * 119.99689 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.50374 * 297.71070 * 28 19 18 49 49 H 1.09006 * 109.53397 * 177.61294 * 28 19 18 50 50 H 1.08997 * 109.46085 * 305.86010 * 29 16 15 51 51 H 1.08999 * 109.46057 * 65.83394 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8621 2.5349 0.0013 5 1 0.7735 2.5740 0.0391 6 6 2.3226 3.1779 -1.2942 7 6 1.7450 4.5865 -1.4390 8 7 2.6376 5.5352 -0.7533 9 6 2.6967 5.5650 0.5787 10 8 3.4315 6.3543 1.1336 11 6 1.8489 4.6169 1.4004 12 6 2.4146 3.2030 1.2473 13 7 3.5162 0.6480 -0.0006 14 7 3.5212 -0.6373 -0.0014 15 6 2.2888 -1.0878 -0.0010 16 7 1.8977 -2.4173 -0.0066 17 6 1.0118 -2.7101 1.1274 18 6 0.4853 -4.1421 1.0084 19 6 1.6669 -5.1158 0.9952 20 6 1.1579 -6.5231 0.8180 21 1 1.4677 -7.1058 -0.0369 22 6 0.2967 -7.0668 1.7475 23 7 -0.0802 -6.3574 2.7888 24 14 -0.3349 -8.8110 1.5276 25 1 0.2348 -9.3907 0.2846 26 1 0.0758 -9.6366 2.6916 27 1 -1.8166 -8.7926 1.4319 28 6 2.5991 -4.7589 -0.1659 29 6 3.0644 -3.3091 -0.0130 30 1 -0.3634 0.0000 1.0276 31 1 -0.3632 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5140 33 1 3.4111 3.2348 -1.2988 34 1 1.9929 2.5670 -2.1345 35 1 0.7543 4.6239 -0.9860 36 1 1.6767 4.8468 -2.4953 37 1 3.1866 6.1424 -1.2738 38 1 0.8200 4.6407 1.0413 39 1 1.8774 4.9111 2.4496 40 1 2.1436 2.6114 2.1218 41 1 3.5007 3.2577 1.1736 42 1 1.5672 -2.6036 2.0591 43 1 0.1736 -2.0134 1.1227 44 1 -0.0820 -4.2457 0.0835 45 1 -0.1599 -4.3644 1.8585 46 1 2.2120 -5.0414 1.9361 47 1 -0.6857 -6.7401 3.4428 48 1 2.0651 -4.8722 -1.1094 49 1 3.4644 -5.4218 -0.1556 50 1 3.7170 -3.0473 -0.8458 51 1 3.6101 -3.1999 0.9242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772146299.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:10 Heat of formation + Delta-G solvation = 38.420418 kcal Electronic energy + Delta-G solvation = -31331.086773 eV Core-core repulsion = 27266.198779 eV Total energy + Delta-G solvation = -4064.887995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.93695 -40.49114 -38.53525 -37.29016 -35.07514 -34.68305 -33.88413 -31.87665 -31.34858 -30.17656 -29.17090 -27.69993 -26.73561 -25.66446 -24.51407 -23.09955 -22.45670 -21.86030 -20.86891 -20.27198 -19.84213 -18.78815 -17.68160 -17.44802 -16.97117 -16.44594 -16.27193 -15.95191 -15.48433 -14.84705 -14.64307 -14.59067 -14.31313 -14.24128 -14.07233 -13.75841 -13.38346 -13.08545 -12.96896 -12.89014 -12.68696 -12.64719 -12.45989 -11.99911 -11.79542 -11.66319 -11.38898 -11.31645 -11.25788 -11.14451 -11.00247 -10.58846 -10.40130 -10.37413 -10.19493 -10.11153 -10.06518 -9.78064 -9.54803 -9.43365 -9.11314 -8.86012 -8.41587 -7.90742 -6.08236 -4.13238 1.85034 2.28822 2.34982 2.92585 2.98667 3.24223 3.33051 3.37035 3.89149 4.01105 4.02698 4.20257 4.34051 4.37445 4.51348 4.61953 4.72376 4.84502 4.91994 4.97073 4.99202 5.01871 5.19258 5.22113 5.23832 5.29645 5.35054 5.46647 5.56877 5.66105 5.73012 5.81042 5.86508 5.92507 5.97595 6.04963 6.18098 6.22755 6.42713 6.48326 6.62047 6.67771 6.84873 6.87776 6.96859 7.21777 7.24397 7.49776 7.64132 7.87493 7.90600 7.97961 8.35128 8.90541 8.93672 9.52037 10.98446 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.002078 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.604294 B =13469.299662 C =13721.396507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.486 5.486 3 C 0.155 3.845 4 C 0.014 3.986 5 H 0.084 0.916 6 C -0.134 4.134 7 C 0.111 3.889 8 N -0.725 5.725 9 C 0.519 3.481 10 O -0.552 6.552 11 C -0.137 4.137 12 C -0.103 4.103 13 N -0.275 5.275 14 N -0.332 5.332 15 C 0.379 3.621 16 N -0.449 5.449 17 C 0.054 3.946 18 C -0.104 4.104 19 C 0.045 3.955 20 C -0.509 4.509 21 H 0.057 0.943 22 C 0.060 3.940 23 N -0.893 5.893 24 Si 0.891 3.109 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.109 4.109 29 C 0.077 3.923 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.401 0.599 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.101 0.899 46 H 0.025 0.975 47 H 0.260 0.740 48 H 0.059 0.941 49 H 0.062 0.938 50 H 0.075 0.925 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.220 21.393 -7.548 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.182 5.182 3 C -0.113 4.113 4 C -0.007 4.007 5 H 0.102 0.898 6 C -0.174 4.174 7 C -0.014 4.014 8 N -0.377 5.377 9 C 0.306 3.694 10 O -0.430 6.430 11 C -0.177 4.177 12 C -0.142 4.142 13 N -0.113 5.113 14 N -0.177 5.177 15 C 0.023 3.977 16 N -0.173 5.173 17 C -0.072 4.072 18 C -0.142 4.142 19 C 0.026 3.974 20 C -0.547 4.547 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.719 3.281 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.147 4.147 29 C -0.049 4.049 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.237 0.763 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.119 0.881 46 H 0.043 0.957 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.093 0.907 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.855 21.480 -7.394 22.792 hybrid contribution -1.439 -0.841 0.251 1.685 sum -3.294 20.638 -7.143 22.086 Atomic orbital electron populations 1.22132 0.75760 1.05126 1.03887 1.45984 1.08402 1.05753 1.58018 1.24386 0.87333 0.90825 1.08789 1.19190 1.00419 0.84963 0.96155 0.89811 1.21871 1.03455 0.95450 0.96578 1.21764 0.93356 0.88015 0.98234 1.45970 1.45160 1.39757 1.06833 1.20576 0.82655 0.83450 0.82729 1.90767 1.40934 1.40105 1.71146 1.21992 0.99601 0.94526 1.01607 1.21231 1.02491 0.93376 0.97114 1.73870 1.17180 1.03350 1.16949 1.74686 1.15494 1.02684 1.24868 1.23092 0.86334 0.88094 1.00165 1.58838 1.19804 0.95684 1.42929 1.22620 0.94190 1.01544 0.88844 1.21751 1.00951 0.88528 1.02971 1.18735 0.91541 0.94199 0.92907 1.21212 1.27179 0.98084 1.08240 0.92461 1.24976 0.96323 0.97635 0.95111 1.69856 1.34799 1.36563 1.12021 0.86551 0.78542 0.84883 0.78120 1.19765 1.21077 1.21081 1.21780 1.00140 0.91354 1.01429 1.22140 0.88647 0.92671 1.01477 0.90231 0.89489 0.88344 0.89556 0.90154 0.90324 0.88934 0.76305 0.89139 0.87957 0.90185 0.89944 0.94225 0.92071 0.93347 0.88067 0.95652 0.93045 0.92206 0.91971 0.90692 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 9.13 59.85 0.55 1.18 16 2 N -0.49 -6.28 3.21 -121.46 -0.39 -6.67 16 3 C 0.15 1.93 6.39 -154.02 -0.98 0.94 16 4 C 0.01 0.10 2.08 -93.00 -0.19 -0.09 16 5 H 0.08 0.42 6.62 -51.93 -0.34 0.07 16 6 C -0.13 -0.85 4.96 -27.38 -0.14 -0.99 16 7 C 0.11 0.41 6.46 -3.69 -0.02 0.39 16 8 N -0.72 -4.53 5.27 -59.92 -0.32 -4.85 16 9 C 0.52 4.81 7.06 -11.26 -0.08 4.73 16 10 O -0.55 -7.70 17.92 5.56 0.10 -7.60 16 11 C -0.14 -0.92 5.57 -27.50 -0.15 -1.08 16 12 C -0.10 -0.85 4.89 -27.31 -0.13 -0.98 16 13 N -0.27 -4.51 12.18 32.99 0.40 -4.11 16 14 N -0.33 -6.13 11.24 30.32 0.34 -5.79 16 15 C 0.38 6.36 7.21 -318.87 -2.30 4.06 16 16 N -0.45 -7.87 4.70 -174.55 -0.82 -8.69 16 17 C 0.05 0.96 5.28 -3.83 -0.02 0.94 16 18 C -0.10 -2.21 5.12 -26.65 -0.14 -2.34 16 19 C 0.04 1.04 2.16 -91.65 -0.20 0.84 16 20 C -0.51 -13.23 8.56 -34.44 -0.29 -13.53 16 21 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.59 5.31 -17.82 -0.09 1.50 16 23 N -0.89 -24.15 11.37 55.43 0.63 -23.52 16 24 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C -0.11 -2.17 5.32 -26.65 -0.14 -2.32 16 29 C 0.08 1.41 4.88 -3.84 -0.02 1.39 16 30 H 0.08 0.61 7.76 -51.93 -0.40 0.21 16 31 H 0.09 0.45 7.24 -51.93 -0.38 0.08 16 32 H 0.10 0.93 7.64 -51.93 -0.40 0.53 16 33 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16 34 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.08 0.18 6.71 -51.93 -0.35 -0.17 16 36 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.40 2.23 8.91 -40.82 -0.36 1.86 16 38 H 0.09 0.37 6.77 -51.93 -0.35 0.01 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.08 0.87 7.86 -51.93 -0.41 0.46 16 42 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.92 5.22 -51.93 -0.27 0.65 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.10 2.41 6.18 -51.92 -0.32 2.09 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.07 1.33 7.92 -51.93 -0.41 0.92 16 51 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -33.52 391.38 -11.71 -45.23 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.18 Total: -0.01 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -4.36 Total: -5.34 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.15 Total: -53.62 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.10 Total: -7.60 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.52 -11.71 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772146299.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.650 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds