Wall clock time and date at job start Wed Apr 1 2020 06:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36735 * 127.13829 * 2 1 4 4 C 1.50704 * 126.34439 * 0.05983 * 3 2 1 5 5 H 1.09000 * 108.56764 * 2.04773 * 4 3 2 6 6 C 1.51777 * 108.61450 * 244.24090 * 4 3 2 7 7 C 1.52936 * 110.88464 * 171.89142 * 6 4 3 8 8 N 1.47199 * 108.69040 * 86.44880 * 7 6 4 9 9 C 1.33366 * 120.43497 * 288.05102 * 8 7 6 10 10 O 1.21281 * 119.89757 * 180.29413 * 9 8 7 11 11 C 1.51424 * 120.21156 * 0.27663 * 9 8 7 12 12 C 1.51797 * 108.61329 * 119.97894 * 4 3 2 13 13 N 1.30288 * 107.30602 * 180.02562 * 3 2 1 14 14 N 1.28527 * 110.05517 * 0.02562 * 13 3 2 15 15 C 1.31214 * 109.85861 * 359.97438 * 14 13 3 16 16 N 1.38589 * 126.47321 * 179.74117 * 15 14 13 17 17 C 1.46855 * 110.99940 * 124.23388 * 16 15 14 18 18 C 1.53034 * 109.51826 * 174.16074 * 17 16 15 19 19 C 1.53114 * 109.28127 * 59.18225 * 18 17 16 20 20 C 1.50697 * 109.52483 * 182.43839 * 19 18 17 21 21 H 1.08001 * 120.00320 * 119.68206 * 20 19 18 22 22 C 1.37885 * 119.99814 * 299.68121 * 20 19 18 23 23 N 1.31515 * 120.00086 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99992 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47020 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46973 * 119.99804 * 24 22 20 27 27 H 1.48498 * 109.47122 * 240.00130 * 24 22 20 28 28 C 1.53121 * 109.15828 * 302.34046 * 19 18 17 29 29 C 1.46846 * 111.00152 * 0.02562 * 16 15 14 30 30 H 1.08993 * 109.47504 * 270.00102 * 1 2 3 31 31 H 1.09004 * 109.46582 * 29.99503 * 1 2 3 32 32 H 1.08998 * 109.47068 * 149.99110 * 1 2 3 33 33 H 1.09002 * 109.19343 * 292.24581 * 6 4 3 34 34 H 1.08999 * 109.19586 * 51.52059 * 6 4 3 35 35 H 1.08999 * 109.59999 * 326.68948 * 7 6 4 36 36 H 1.09002 * 109.59371 * 206.21080 * 7 6 4 37 37 H 0.97007 * 119.78243 * 108.02703 * 8 7 6 38 38 H 1.09007 * 109.63341 * 311.51627 * 11 9 8 39 39 H 1.09000 * 109.79945 * 191.01860 * 11 9 8 40 40 H 1.09000 * 109.22155 * 308.25716 * 12 4 3 41 41 H 1.09002 * 109.22265 * 67.65015 * 12 4 3 42 42 H 1.09001 * 109.46129 * 294.17620 * 17 16 15 43 43 H 1.09000 * 109.45977 * 54.14394 * 17 16 15 44 44 H 1.08998 * 109.50577 * 299.23659 * 18 17 16 45 45 H 1.09007 * 109.49965 * 179.11757 * 18 17 16 46 46 H 1.08997 * 109.57817 * 62.27637 * 19 18 17 47 47 H 0.96992 * 119.99689 * 180.02562 * 23 22 20 48 48 H 1.08997 * 109.50374 * 297.71070 * 28 19 18 49 49 H 1.09006 * 109.53397 * 177.61294 * 28 19 18 50 50 H 1.08997 * 109.46085 * 305.86010 * 29 16 15 51 51 H 1.08999 * 109.46057 * 65.83394 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2906 1.0900 0.0000 4 6 1.8621 2.5349 0.0013 5 1 0.7735 2.5740 0.0391 6 6 2.3226 3.1779 -1.2942 7 6 1.7450 4.5865 -1.4390 8 7 2.6376 5.5352 -0.7533 9 6 2.6967 5.5650 0.5787 10 8 3.4315 6.3543 1.1336 11 6 1.8489 4.6169 1.4004 12 6 2.4146 3.2030 1.2473 13 7 3.5162 0.6480 -0.0006 14 7 3.5212 -0.6373 -0.0014 15 6 2.2888 -1.0878 -0.0010 16 7 1.8977 -2.4173 -0.0066 17 6 1.0118 -2.7101 1.1274 18 6 0.4853 -4.1421 1.0084 19 6 1.6669 -5.1158 0.9952 20 6 1.1579 -6.5231 0.8180 21 1 1.4677 -7.1058 -0.0369 22 6 0.2967 -7.0668 1.7475 23 7 -0.0802 -6.3574 2.7888 24 14 -0.3349 -8.8110 1.5276 25 1 0.2348 -9.3907 0.2846 26 1 0.0758 -9.6366 2.6916 27 1 -1.8166 -8.7926 1.4319 28 6 2.5991 -4.7589 -0.1659 29 6 3.0644 -3.3091 -0.0130 30 1 -0.3634 0.0000 1.0276 31 1 -0.3632 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5140 33 1 3.4111 3.2348 -1.2988 34 1 1.9929 2.5670 -2.1345 35 1 0.7543 4.6239 -0.9860 36 1 1.6767 4.8468 -2.4953 37 1 3.1866 6.1424 -1.2738 38 1 0.8200 4.6407 1.0413 39 1 1.8774 4.9111 2.4496 40 1 2.1436 2.6114 2.1218 41 1 3.5007 3.2577 1.1736 42 1 1.5672 -2.6036 2.0591 43 1 0.1736 -2.0134 1.1227 44 1 -0.0820 -4.2457 0.0835 45 1 -0.1599 -4.3644 1.8585 46 1 2.2120 -5.0414 1.9361 47 1 -0.6857 -6.7401 3.4428 48 1 2.0651 -4.8722 -1.1094 49 1 3.4644 -5.4218 -0.1556 50 1 3.7170 -3.0473 -0.8458 51 1 3.6101 -3.1999 0.9242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772146299.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:09 Heat of formation + Delta-G solvation = 17.231294 kcal Electronic energy + Delta-G solvation = -31332.005603 eV Core-core repulsion = 27266.198779 eV Total energy + Delta-G solvation = -4065.806824 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.05986 -41.14226 -40.01666 -38.04253 -36.19009 -35.82759 -35.01253 -33.33177 -32.29989 -31.73975 -30.23875 -28.65387 -27.68287 -27.17414 -25.12755 -24.52289 -23.98218 -22.89811 -22.09104 -21.01310 -20.65270 -20.32430 -18.59414 -18.37034 -18.11460 -17.80358 -17.36845 -17.06197 -16.52103 -16.32605 -15.77837 -15.48138 -15.37759 -15.15806 -14.81454 -14.68655 -14.56555 -14.48568 -14.20275 -14.16442 -13.69761 -13.57744 -13.23924 -13.17449 -12.97287 -12.82997 -12.68527 -12.50715 -12.40516 -12.24676 -12.13221 -12.02274 -11.97369 -11.83030 -11.58896 -11.35568 -11.14658 -10.93276 -10.84322 -10.76027 -10.66849 -10.40693 -10.10402 -9.22845 -8.08965 -6.20919 0.75762 1.27506 1.41623 1.45104 1.55290 1.65465 1.81969 2.44028 2.44799 2.68521 3.19169 3.19744 3.44602 3.61786 3.72809 3.85926 3.90680 4.04041 4.07099 4.16132 4.21648 4.27188 4.33537 4.40572 4.41155 4.47516 4.51751 4.52592 4.57899 4.63531 4.72828 4.76724 4.79370 4.89232 4.92869 4.97732 5.02184 5.03006 5.17055 5.21690 5.22172 5.34994 5.46035 5.57475 5.67788 5.72505 5.93234 5.97913 6.11669 6.25089 6.32514 6.38145 6.89118 7.28503 7.47085 7.77580 8.96415 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029141 B = 0.002078 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.604294 B =13469.299662 C =13721.396507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.478 5.478 3 C 0.183 3.817 4 C 0.015 3.985 5 H 0.130 0.870 6 C -0.130 4.130 7 C 0.114 3.886 8 N -0.716 5.716 9 C 0.511 3.489 10 O -0.611 6.611 11 C -0.126 4.126 12 C -0.097 4.097 13 N -0.321 5.321 14 N -0.368 5.368 15 C 0.358 3.642 16 N -0.445 5.445 17 C 0.068 3.932 18 C -0.091 4.091 19 C 0.041 3.959 20 C -0.528 4.528 21 H 0.053 0.947 22 C 0.015 3.985 23 N -0.916 5.916 24 Si 0.951 3.049 25 H -0.269 1.269 26 H -0.285 1.285 27 H -0.278 1.278 28 C -0.098 4.098 29 C 0.088 3.912 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.403 0.597 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.019 0.981 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.075 0.925 46 H -0.011 1.011 47 H 0.261 0.739 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.191 23.000 -9.181 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.173 5.173 3 C -0.087 4.087 4 C -0.006 4.006 5 H 0.148 0.852 6 C -0.170 4.170 7 C -0.009 4.009 8 N -0.366 5.366 9 C 0.299 3.701 10 O -0.494 6.494 11 C -0.166 4.166 12 C -0.136 4.136 13 N -0.159 5.159 14 N -0.213 5.213 15 C 0.000 4.000 16 N -0.169 5.169 17 C -0.058 4.058 18 C -0.130 4.130 19 C 0.022 3.978 20 C -0.566 4.566 21 H 0.071 0.929 22 C -0.183 4.183 23 N -0.556 5.556 24 Si 0.778 3.222 25 H -0.194 1.194 26 H -0.211 1.211 27 H -0.204 1.204 28 C -0.136 4.136 29 C -0.038 4.038 30 H 0.112 0.888 31 H 0.152 0.848 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.239 0.761 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.038 0.962 43 H 0.114 0.886 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.008 0.992 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.100 0.900 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.853 23.083 -9.074 25.273 hybrid contribution -0.489 -1.276 0.742 1.555 sum -5.342 21.807 -8.332 23.948 Atomic orbital electron populations 1.22584 0.72849 1.07229 1.05516 1.46247 1.09979 1.04427 1.56661 1.25316 0.86235 0.92493 1.04627 1.19561 1.03058 0.81538 0.96447 0.85187 1.21840 1.01833 0.97328 0.95967 1.22013 0.93598 0.85326 0.99997 1.46058 1.44893 1.39565 1.06119 1.21085 0.82221 0.83091 0.83722 1.90740 1.43442 1.42716 1.72461 1.21945 1.01072 0.92243 1.01321 1.21115 1.00588 0.94511 0.97407 1.73811 1.19734 1.02634 1.19732 1.74567 1.17095 1.04026 1.25603 1.22926 0.86990 0.88269 1.01843 1.58774 1.19158 0.96389 1.42586 1.22400 0.95073 1.00084 0.88288 1.21455 0.99594 0.90296 1.01630 1.18709 0.92595 0.94065 0.92431 1.21534 1.27411 0.99447 1.08232 0.92863 1.25681 0.96603 1.01134 0.94924 1.69980 1.35161 1.37933 1.12538 0.85606 0.78127 0.80571 0.77931 1.19354 1.21135 1.20396 1.21616 0.99467 0.92552 0.99969 1.21915 0.89103 0.91969 1.00858 0.88765 0.84830 0.89006 0.92534 0.89309 0.87222 0.86102 0.76084 0.84973 0.88325 0.90467 0.93320 0.96220 0.88616 0.93417 0.90630 0.99244 0.92994 0.91911 0.91857 0.90006 0.95233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 9.13 127.77 1.17 1.92 16 2 N -0.48 -11.11 3.21 -538.17 -1.73 -12.83 16 3 C 0.18 4.15 6.39 137.64 0.88 5.03 16 4 C 0.01 0.17 2.08 -12.34 -0.03 0.14 16 5 H 0.13 0.38 6.62 -2.39 -0.02 0.36 16 6 C -0.13 -1.21 4.96 30.17 0.15 -1.06 16 7 C 0.11 0.31 6.46 86.22 0.56 0.86 16 8 N -0.72 -7.18 5.27 -462.68 -2.44 -9.62 16 9 C 0.51 8.73 7.06 88.11 0.62 9.35 16 10 O -0.61 -17.29 17.92 -3.03 -0.05 -17.34 16 11 C -0.13 -1.33 5.57 30.10 0.17 -1.16 16 12 C -0.10 -1.39 4.89 30.22 0.15 -1.25 16 13 N -0.32 -10.54 12.18 -49.54 -0.60 -11.14 16 14 N -0.37 -13.75 11.24 -58.00 -0.65 -14.40 16 15 C 0.36 11.74 7.21 260.11 1.88 13.62 16 16 N -0.45 -15.49 4.70 -706.15 -3.32 -18.81 16 17 C 0.07 2.40 5.28 86.32 0.46 2.85 16 18 C -0.09 -3.95 5.12 30.64 0.16 -3.79 16 19 C 0.04 1.95 2.16 -11.46 -0.02 1.93 16 20 C -0.53 -27.99 8.56 25.60 0.22 -27.77 16 21 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 22 C 0.02 0.81 5.31 84.66 0.45 1.26 16 23 N -0.92 -50.44 11.37 21.45 0.24 -50.19 16 24 Si 0.95 42.13 29.54 68.60 2.03 44.16 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 28 C -0.10 -3.99 5.32 30.64 0.16 -3.83 16 29 C 0.09 3.33 4.88 86.32 0.42 3.75 16 30 H 0.09 0.99 7.76 -2.39 -0.02 0.97 16 31 H 0.13 0.47 7.24 -2.38 -0.02 0.45 16 32 H 0.09 1.38 7.64 -2.39 -0.02 1.36 16 33 H 0.06 0.90 8.05 -2.39 -0.02 0.88 16 34 H 0.09 0.74 8.09 -2.39 -0.02 0.72 16 35 H 0.11 -0.27 6.71 -2.39 -0.02 -0.29 16 36 H 0.12 -0.22 8.14 -2.39 -0.02 -0.24 16 37 H 0.40 3.79 8.91 -92.70 -0.83 2.97 16 38 H 0.13 0.29 6.77 -2.38 -0.02 0.27 16 39 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.17 8.10 -2.39 -0.02 1.15 16 41 H 0.05 1.04 7.86 -2.39 -0.02 1.02 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.10 2.69 5.22 -2.39 -0.01 2.68 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 45 H 0.08 3.68 6.18 -2.38 -0.01 3.67 16 46 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 47 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 48 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 49 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 50 H 0.08 2.96 7.92 -2.39 -0.02 2.94 16 51 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -79.36 391.38 0.98 -78.38 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.12 Total: 9.95 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 7.38 Total: 1.85 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -8.50 Total: -116.99 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.05 Total: -17.34 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -79.36 0.98 -78.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772146299.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.611 kcal (2) G-P(sol) polarization free energy of solvation -79.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds