Wall clock time and date at job start Wed Apr 1 2020 06:05:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.36738 * 127.13750 * 2 1
4 4 C 1.50699 * 126.35007 * 359.97438 * 3 2 1
5 5 C 1.53001 * 109.47174 * 269.72113 * 4 3 2
6 6 H 1.08997 * 109.70512 * 54.47830 * 5 4 3
7 7 C 1.53347 * 109.67309 * 174.99986 * 5 4 3
8 8 C 1.52915 * 108.67477 * 187.26480 * 7 5 4
9 9 N 1.45755 * 110.48805 * 309.24197 * 8 7 5
10 10 C 1.33362 * 124.10233 * 19.07670 * 9 8 7
11 11 O 1.21282 * 118.24236 * 177.75624 * 10 9 8
12 12 C 1.50173 * 123.50947 * 357.77733 * 10 9 8
13 13 N 1.30297 * 107.30333 * 179.73437 * 3 2 1
14 14 N 1.28527 * 110.05521 * 0.26139 * 13 3 2
15 15 C 1.31217 * 109.85950 * 359.97438 * 14 13 3
16 16 N 1.38576 * 126.47063 * 180.02562 * 15 14 13
17 17 C 1.46848 * 110.99718 * 236.01991 * 16 15 14
18 18 C 1.53043 * 109.52334 * 174.15982 * 17 16 15
19 19 C 1.53116 * 109.27892 * 59.18019 * 18 17 16
20 20 C 1.53120 * 109.16038 * 302.34853 * 19 18 17
21 21 H 1.09005 * 109.49738 * 297.70870 * 20 19 18
22 22 C 1.50701 * 109.50266 * 177.59649 * 20 19 18
23 23 H 1.08005 * 119.99711 * 239.99878 * 22 20 19
24 24 C 1.37874 * 120.00056 * 59.99486 * 22 20 19
25 25 N 1.31510 * 120.00253 * 0.02562 * 24 22 20
26 26 Si 1.86804 * 119.99914 * 180.02562 * 24 22 20
27 27 H 1.48496 * 109.46913 * 60.00223 * 26 24 22
28 28 H 1.48497 * 109.47165 * 180.02562 * 26 24 22
29 29 H 1.48502 * 109.47096 * 300.00360 * 26 24 22
30 30 C 1.46849 * 111.00436 * 111.81286 * 16 15 14
31 31 H 1.08998 * 109.47009 * 90.02571 * 1 2 3
32 32 H 1.09003 * 109.47219 * 210.02850 * 1 2 3
33 33 H 1.08997 * 109.46922 * 330.02964 * 1 2 3
34 34 H 1.08996 * 109.47449 * 149.71278 * 4 3 2
35 35 H 1.09000 * 109.46990 * 29.71706 * 4 3 2
36 36 H 1.09004 * 109.59985 * 307.01411 * 7 5 4
37 37 H 1.09001 * 109.60890 * 67.50429 * 7 5 4
38 38 H 1.08997 * 109.30705 * 69.55232 * 8 7 5
39 39 H 1.09006 * 109.29993 * 188.93492 * 8 7 5
40 40 H 0.96997 * 117.95339 * 199.07850 * 9 8 7
41 41 H 1.08999 * 109.40190 * 257.45573 * 12 10 9
42 42 H 1.08997 * 109.39984 * 137.71247 * 12 10 9
43 43 H 1.08994 * 109.46633 * 294.17765 * 17 16 15
44 44 H 1.09004 * 109.46737 * 54.15883 * 17 16 15
45 45 H 1.09003 * 109.50352 * 179.12008 * 18 17 16
46 46 H 1.09002 * 109.50546 * 299.23919 * 18 17 16
47 47 H 1.08998 * 109.52086 * 62.25056 * 19 18 17
48 48 H 1.08993 * 109.52475 * 182.37489 * 19 18 17
49 49 H 0.97006 * 120.00260 * 180.02562 * 25 24 22
50 50 H 1.09001 * 109.45955 * 305.85101 * 30 16 15
51 51 H 1.09002 * 109.46071 * 65.82190 * 30 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2905 1.0901 0.0000
4 6 1.8622 2.5349 -0.0005
5 6 1.7245 3.0255 -1.4432
6 1 1.0514 2.3673 -1.9926
7 6 1.1695 4.4550 -1.4516
8 6 0.8702 4.8555 -2.8967
9 7 2.0249 4.5963 -3.7475
10 6 3.0206 3.7696 -3.4253
11 8 3.9103 3.6010 -4.2321
12 6 3.0987 3.0361 -2.1172
13 7 3.5162 0.6480 0.0058
14 7 3.5211 -0.6373 0.0039
15 6 2.2888 -1.0878 -0.0027
16 7 1.8978 -2.4173 -0.0061
17 6 1.0198 -2.7046 -1.1476
18 6 0.7268 -4.2058 -1.2023
19 6 0.0545 -4.6375 0.1039
20 6 0.9682 -4.2831 1.2804
21 1 1.9053 -4.8330 1.1919
22 6 0.2884 -4.6511 2.5741
23 1 0.0836 -3.8896 3.3121
24 6 -0.0722 -5.9598 2.8153
25 7 0.1775 -6.8871 1.9169
26 14 -0.9156 -6.4158 4.4186
27 1 -2.1908 -5.6644 4.5382
28 1 -1.1965 -7.8739 4.4329
29 1 -0.0294 -6.0716 5.5594
30 6 1.2542 -2.7799 1.2631
31 1 -0.3633 -0.0005 -1.0276
32 1 -0.3634 -0.8897 0.5143
33 1 -0.3633 0.8902 0.5134
34 1 2.6095 3.1356 0.5178
35 1 0.9030 2.6297 0.5085
36 1 0.2524 4.4946 -0.8638
37 1 1.9076 5.1364 -1.0286
38 1 0.0183 4.2812 -3.2608
39 1 0.6270 5.9175 -2.9332
40 1 2.0722 5.0536 -4.6016
41 1 3.8176 3.5331 -1.4658
42 1 3.4224 2.0108 -2.2959
43 1 0.0849 -2.1560 -1.0339
44 1 1.5115 -2.3970 -2.0705
45 1 0.0625 -4.4166 -2.0404
46 1 1.6600 -4.7543 -1.3299
47 1 -0.8974 -4.1179 0.2127
48 1 -0.1178 -5.7136 0.0866
49 1 -0.0766 -7.8078 2.0865
50 1 1.9162 -2.5266 2.0913
51 1 0.3182 -2.2309 1.3655
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001772168260.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:05:42
Heat of formation + Delta-G solvation = 38.176564 kcal
Electronic energy + Delta-G solvation = -31541.332694 eV
Core-core repulsion = 27476.434125 eV
Total energy + Delta-G solvation = -4064.898569 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.89229 -40.57386 -38.59124 -37.28733 -35.11996 -34.72244 -33.64355 -32.00074
-30.41835 -30.12546 -29.76621 -27.80456 -27.33897 -25.15012 -24.33503 -23.58044
-22.36176 -21.73435 -20.98558 -20.58894 -19.57972 -18.95441 -17.70132 -17.23572
-16.70479 -16.28025 -16.14410 -15.81723 -15.60144 -15.14940 -14.77910 -14.65227
-14.47245 -14.29100 -13.93402 -13.70862 -13.51374 -13.21791 -13.08480 -12.79615
-12.65344 -12.59734 -12.52260 -12.14571 -11.97932 -11.87887 -11.46054 -11.28296
-11.19159 -11.04330 -10.92724 -10.84392 -10.34779 -10.26926 -10.10160 -10.04833
-9.99817 -9.70747 -9.46973 -9.37629 -8.95686 -8.75137 -8.46557 -8.28945
-6.08919 -4.16397 1.81944 2.39225 2.44572 2.93600 3.01327 3.24858
3.30852 3.32343 3.74942 3.98299 4.10073 4.17577 4.30397 4.36262
4.45810 4.48900 4.78714 4.84401 4.87372 4.94399 4.97262 5.09685
5.13713 5.21076 5.26576 5.29723 5.32808 5.36177 5.38421 5.62874
5.69459 5.73632 5.77019 5.82953 5.95636 6.05383 6.17720 6.24446
6.41932 6.45491 6.49089 6.61344 6.76381 6.92362 6.97862 7.17291
7.28290 7.59462 7.63002 7.90260 7.92578 8.00383 8.29601 8.86075
8.99274 9.48686 10.97136
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.021668 B = 0.002325 C = 0.002271
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1291.921435 B =12038.632355 C =12326.269866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.065 3.935
2 N -0.500 5.500
3 C 0.162 3.838
4 C -0.022 4.022
5 C -0.086 4.086
6 H 0.078 0.922
7 C -0.132 4.132
8 C 0.111 3.889
9 N -0.725 5.725
10 C 0.520 3.480
11 O -0.555 6.555
12 C -0.127 4.127
13 N -0.285 5.285
14 N -0.273 5.273
15 C 0.364 3.636
16 N -0.444 5.444
17 C 0.061 3.939
18 C -0.117 4.117
19 C -0.113 4.113
20 C 0.057 3.943
21 H 0.041 0.959
22 C -0.519 4.519
23 H 0.053 0.947
24 C 0.066 3.934
25 N -0.885 5.885
26 Si 0.893 3.107
27 H -0.278 1.278
28 H -0.286 1.286
29 H -0.277 1.277
30 C 0.070 3.930
31 H 0.079 0.921
32 H 0.097 0.903
33 H 0.088 0.912
34 H 0.102 0.898
35 H 0.085 0.915
36 H 0.088 0.912
37 H 0.079 0.921
38 H 0.065 0.935
39 H 0.078 0.922
40 H 0.398 0.602
41 H 0.107 0.893
42 H 0.105 0.895
43 H 0.034 0.966
44 H 0.065 0.935
45 H 0.056 0.944
46 H 0.068 0.932
47 H 0.032 0.968
48 H 0.097 0.903
49 H 0.262 0.738
50 H 0.068 0.932
51 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.711 23.291 -7.640 25.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 N -0.198 5.198
3 C -0.106 4.106
4 C -0.062 4.062
5 C -0.105 4.105
6 H 0.097 0.903
7 C -0.170 4.170
8 C -0.013 4.013
9 N -0.378 5.378
10 C 0.308 3.692
11 O -0.433 6.433
12 C -0.167 4.167
13 N -0.126 5.126
14 N -0.114 5.114
15 C 0.010 3.990
16 N -0.168 5.168
17 C -0.066 4.066
18 C -0.155 4.155
19 C -0.151 4.151
20 C 0.038 3.962
21 H 0.059 0.941
22 C -0.558 4.558
23 H 0.072 0.928
24 C -0.136 4.136
25 N -0.523 5.523
26 Si 0.720 3.280
27 H -0.204 1.204
28 H -0.212 1.212
29 H -0.202 1.202
30 C -0.056 4.056
31 H 0.097 0.903
32 H 0.115 0.885
33 H 0.107 0.893
34 H 0.120 0.880
35 H 0.104 0.896
36 H 0.107 0.893
37 H 0.098 0.902
38 H 0.084 0.916
39 H 0.097 0.903
40 H 0.233 0.767
41 H 0.125 0.875
42 H 0.123 0.877
43 H 0.052 0.948
44 H 0.084 0.916
45 H 0.074 0.926
46 H 0.087 0.913
47 H 0.051 0.949
48 H 0.115 0.885
49 H 0.072 0.928
50 H 0.087 0.913
51 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -3.350 22.529 -7.891 24.105
hybrid contribution -2.789 0.281 0.667 2.881
sum -6.138 22.810 -7.223 24.701
Atomic orbital electron populations
1.22322 0.76353 1.05436 1.03776 1.47458 1.08675 1.07903 1.55784
1.24479 0.87915 0.91382 1.06811 1.20028 1.02884 0.86400 0.96877
1.21262 0.96958 0.96723 0.95599 0.90347 1.21955 1.02829 0.96215
0.95969 1.21357 0.87953 1.01381 0.90621 1.45516 1.22706 1.46773
1.22786 1.20310 0.80931 0.78650 0.89331 1.90779 1.37965 1.64111
1.50446 1.21721 0.98404 1.03010 0.93557 1.74141 1.17037 1.03317
1.18069 1.74547 1.15399 1.02106 1.19306 1.23579 0.87454 0.85705
1.02296 1.59295 1.44020 1.07317 1.06212 1.22278 0.93367 0.99308
0.91618 1.21716 1.01359 0.92536 0.99924 1.21715 0.97062 1.04230
0.92070 1.18700 0.96438 0.86903 0.94156 0.94061 1.20987 1.39391
0.93601 1.01813 0.92836 1.24910 0.95678 0.96389 0.96631 1.69860
1.46923 1.01507 1.34043 0.86653 0.79901 0.77380 0.84033 1.20376
1.21196 1.20205 1.22606 0.95082 1.01268 0.86605 0.90297 0.88475
0.89324 0.87985 0.89635 0.89327 0.90237 0.91635 0.90338 0.76707
0.87455 0.87715 0.94809 0.91604 0.92571 0.91291 0.94936 0.88470
0.92766 0.91304 0.95355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.62 9.33 59.85 0.56 1.18 16
2 N -0.50 -6.77 3.21 -121.46 -0.39 -7.16 16
3 C 0.16 2.07 6.62 -154.01 -1.02 1.05 16
4 C -0.02 -0.16 5.07 -27.88 -0.14 -0.30 16
5 C -0.09 -0.55 2.24 -90.40 -0.20 -0.75 16
6 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16
7 C -0.13 -0.45 5.32 -26.60 -0.14 -0.59 16
8 C 0.11 0.40 7.17 -4.49 -0.03 0.37 16
9 N -0.72 -5.05 5.45 -61.39 -0.33 -5.38 16
10 C 0.52 5.64 7.71 -11.87 -0.09 5.55 16
11 O -0.56 -8.72 17.78 5.56 0.10 -8.62 16
12 C -0.13 -1.22 4.98 -28.10 -0.14 -1.36 16
13 N -0.28 -4.81 11.91 32.99 0.39 -4.41 16
14 N -0.27 -5.37 12.23 30.31 0.37 -5.00 16
15 C 0.36 6.47 6.65 -318.88 -2.12 4.35 16
16 N -0.44 -8.33 4.70 -174.55 -0.82 -9.15 16
17 C 0.06 1.01 5.14 -3.83 -0.02 0.99 16
18 C -0.12 -2.09 6.09 -26.65 -0.16 -2.26 16
19 C -0.11 -2.43 5.02 -26.61 -0.13 -2.56 16
20 C 0.06 1.34 2.26 -91.69 -0.21 1.13 16
21 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16
22 C -0.52 -13.43 8.56 -34.44 -0.29 -13.73 16
23 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16
24 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16
25 N -0.89 -24.14 11.35 55.43 0.63 -23.51 16
26 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16
27 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16
28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16
29 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16
30 C 0.07 1.41 4.47 -3.84 -0.02 1.39 16
31 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16
32 H 0.10 1.10 4.97 -51.93 -0.26 0.84 16
33 H 0.09 0.57 7.25 -51.93 -0.38 0.19 16
34 H 0.10 0.68 8.09 -51.93 -0.42 0.26 16
35 H 0.09 0.43 7.26 -51.93 -0.38 0.05 16
36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16
37 H 0.08 0.27 8.12 -51.93 -0.42 -0.16 16
38 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16
39 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16
40 H 0.40 2.46 8.80 -40.82 -0.36 2.10 16
41 H 0.11 0.96 8.06 -51.93 -0.42 0.54 16
42 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16
43 H 0.03 0.49 5.68 -51.93 -0.30 0.19 16
44 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16
45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
46 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
47 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16
48 H 0.10 2.38 6.15 -51.93 -0.32 2.06 16
49 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16
50 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16
51 H 0.03 0.53 5.71 -51.93 -0.30 0.23 16
LS Contribution 392.44 15.07 5.91 5.91
Total: -1.00 -33.99 392.44 -11.53 -45.52
By element:
Atomic # 1 Polarization: 8.45 SS G_CDS: -8.11 Total: 0.34 kcal
Atomic # 6 Polarization: 0.35 SS G_CDS: -4.26 Total: -3.91 kcal
Atomic # 7 Polarization: -54.46 SS G_CDS: -0.15 Total: -54.61 kcal
Atomic # 8 Polarization: -8.72 SS G_CDS: 0.10 Total: -8.62 kcal
Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -33.99 -11.53 -45.52 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001772168260.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.700 kcal
(2) G-P(sol) polarization free energy of solvation -33.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.708 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.177 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds