Wall clock time and date at job start Wed Apr 1 2020 06:05:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.36738 * 127.13750 * 2 1
4 4 C 1.50699 * 126.35007 * 359.97438 * 3 2 1
5 5 C 1.53001 * 109.47174 * 269.72113 * 4 3 2
6 6 H 1.08997 * 109.70512 * 54.47830 * 5 4 3
7 7 C 1.53347 * 109.67309 * 174.99986 * 5 4 3
8 8 C 1.52915 * 108.67477 * 187.26480 * 7 5 4
9 9 N 1.45755 * 110.48805 * 309.24197 * 8 7 5
10 10 C 1.33362 * 124.10233 * 19.07670 * 9 8 7
11 11 O 1.21282 * 118.24236 * 177.75624 * 10 9 8
12 12 C 1.50173 * 123.50947 * 357.77733 * 10 9 8
13 13 N 1.30297 * 107.30333 * 179.73437 * 3 2 1
14 14 N 1.28527 * 110.05521 * 0.26139 * 13 3 2
15 15 C 1.31217 * 109.85950 * 359.97438 * 14 13 3
16 16 N 1.38576 * 126.47063 * 180.02562 * 15 14 13
17 17 C 1.46848 * 110.99718 * 236.01991 * 16 15 14
18 18 C 1.53043 * 109.52334 * 174.15982 * 17 16 15
19 19 C 1.53116 * 109.27892 * 59.18019 * 18 17 16
20 20 C 1.53120 * 109.16038 * 302.34853 * 19 18 17
21 21 H 1.09005 * 109.49738 * 297.70870 * 20 19 18
22 22 C 1.50701 * 109.50266 * 177.59649 * 20 19 18
23 23 H 1.08005 * 119.99711 * 239.99878 * 22 20 19
24 24 C 1.37874 * 120.00056 * 59.99486 * 22 20 19
25 25 N 1.31510 * 120.00253 * 0.02562 * 24 22 20
26 26 Si 1.86804 * 119.99914 * 180.02562 * 24 22 20
27 27 H 1.48496 * 109.46913 * 60.00223 * 26 24 22
28 28 H 1.48497 * 109.47165 * 180.02562 * 26 24 22
29 29 H 1.48502 * 109.47096 * 300.00360 * 26 24 22
30 30 C 1.46849 * 111.00436 * 111.81286 * 16 15 14
31 31 H 1.08998 * 109.47009 * 90.02571 * 1 2 3
32 32 H 1.09003 * 109.47219 * 210.02850 * 1 2 3
33 33 H 1.08997 * 109.46922 * 330.02964 * 1 2 3
34 34 H 1.08996 * 109.47449 * 149.71278 * 4 3 2
35 35 H 1.09000 * 109.46990 * 29.71706 * 4 3 2
36 36 H 1.09004 * 109.59985 * 307.01411 * 7 5 4
37 37 H 1.09001 * 109.60890 * 67.50429 * 7 5 4
38 38 H 1.08997 * 109.30705 * 69.55232 * 8 7 5
39 39 H 1.09006 * 109.29993 * 188.93492 * 8 7 5
40 40 H 0.96997 * 117.95339 * 199.07850 * 9 8 7
41 41 H 1.08999 * 109.40190 * 257.45573 * 12 10 9
42 42 H 1.08997 * 109.39984 * 137.71247 * 12 10 9
43 43 H 1.08994 * 109.46633 * 294.17765 * 17 16 15
44 44 H 1.09004 * 109.46737 * 54.15883 * 17 16 15
45 45 H 1.09003 * 109.50352 * 179.12008 * 18 17 16
46 46 H 1.09002 * 109.50546 * 299.23919 * 18 17 16
47 47 H 1.08998 * 109.52086 * 62.25056 * 19 18 17
48 48 H 1.08993 * 109.52475 * 182.37489 * 19 18 17
49 49 H 0.97006 * 120.00260 * 180.02562 * 25 24 22
50 50 H 1.09001 * 109.45955 * 305.85101 * 30 16 15
51 51 H 1.09002 * 109.46071 * 65.82190 * 30 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2905 1.0901 0.0000
4 6 1.8622 2.5349 -0.0005
5 6 1.7245 3.0255 -1.4432
6 1 1.0514 2.3673 -1.9926
7 6 1.1695 4.4550 -1.4516
8 6 0.8702 4.8555 -2.8967
9 7 2.0249 4.5963 -3.7475
10 6 3.0206 3.7696 -3.4253
11 8 3.9103 3.6010 -4.2321
12 6 3.0987 3.0361 -2.1172
13 7 3.5162 0.6480 0.0058
14 7 3.5211 -0.6373 0.0039
15 6 2.2888 -1.0878 -0.0027
16 7 1.8978 -2.4173 -0.0061
17 6 1.0198 -2.7046 -1.1476
18 6 0.7268 -4.2058 -1.2023
19 6 0.0545 -4.6375 0.1039
20 6 0.9682 -4.2831 1.2804
21 1 1.9053 -4.8330 1.1919
22 6 0.2884 -4.6511 2.5741
23 1 0.0836 -3.8896 3.3121
24 6 -0.0722 -5.9598 2.8153
25 7 0.1775 -6.8871 1.9169
26 14 -0.9156 -6.4158 4.4186
27 1 -2.1908 -5.6644 4.5382
28 1 -1.1965 -7.8739 4.4329
29 1 -0.0294 -6.0716 5.5594
30 6 1.2542 -2.7799 1.2631
31 1 -0.3633 -0.0005 -1.0276
32 1 -0.3634 -0.8897 0.5143
33 1 -0.3633 0.8902 0.5134
34 1 2.6095 3.1356 0.5178
35 1 0.9030 2.6297 0.5085
36 1 0.2524 4.4946 -0.8638
37 1 1.9076 5.1364 -1.0286
38 1 0.0183 4.2812 -3.2608
39 1 0.6270 5.9175 -2.9332
40 1 2.0722 5.0536 -4.6016
41 1 3.8176 3.5331 -1.4658
42 1 3.4224 2.0108 -2.2959
43 1 0.0849 -2.1560 -1.0339
44 1 1.5115 -2.3970 -2.0705
45 1 0.0625 -4.4166 -2.0404
46 1 1.6600 -4.7543 -1.3299
47 1 -0.8974 -4.1179 0.2127
48 1 -0.1178 -5.7136 0.0866
49 1 -0.0766 -7.8078 2.0865
50 1 1.9162 -2.5266 2.0913
51 1 0.3182 -2.2309 1.3655
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001772168260.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:05:41
Heat of formation + Delta-G solvation = 15.606919 kcal
Electronic energy + Delta-G solvation = -31542.311387 eV
Core-core repulsion = 27476.434125 eV
Total energy + Delta-G solvation = -4065.877262 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-44.04886 -41.28451 -40.07876 -38.01023 -36.19409 -35.82002 -34.97233 -33.56347
-31.88406 -31.20744 -30.50828 -28.79891 -28.19864 -27.03306 -25.23064 -24.68294
-23.38893 -23.06591 -22.22227 -21.51747 -20.57048 -20.11822 -18.75302 -18.34592
-17.90217 -17.46008 -17.14724 -16.90320 -16.53770 -16.44585 -15.93685 -15.88625
-15.38437 -15.25921 -14.97152 -14.64105 -14.49659 -14.38602 -14.25259 -14.17597
-13.88301 -13.67840 -13.44435 -13.19038 -12.85389 -12.73585 -12.69766 -12.65376
-12.60045 -12.31314 -11.99172 -11.85486 -11.85103 -11.75944 -11.54218 -11.37254
-11.10147 -11.07090 -10.89742 -10.77716 -10.42530 -10.05211 -9.99304 -9.69694
-8.09658 -6.24456 0.71082 1.42063 1.43659 1.45144 1.51848 1.57567
1.81496 2.36002 2.36460 2.51703 3.18293 3.30835 3.53822 3.63067
3.69159 3.86712 3.88861 3.92583 3.99315 4.10315 4.18782 4.23321
4.36321 4.37667 4.41385 4.50107 4.56354 4.56973 4.63081 4.69668
4.75631 4.77619 4.84511 4.88837 4.93876 4.98025 4.98665 5.04700
5.09092 5.15378 5.27311 5.38016 5.42638 5.61039 5.63507 5.76526
5.85437 5.98083 6.12949 6.32605 6.33352 6.34012 6.85760 7.19478
7.43913 7.80130 8.95043
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.021668 B = 0.002325 C = 0.002271
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1291.921435 B =12038.632355 C =12326.269866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.054 3.946
2 N -0.495 5.495
3 C 0.188 3.812
4 C -0.021 4.021
5 C -0.074 4.074
6 H 0.079 0.921
7 C -0.124 4.124
8 C 0.103 3.897
9 N -0.712 5.712
10 C 0.516 3.484
11 O -0.619 6.619
12 C -0.125 4.125
13 N -0.327 5.327
14 N -0.322 5.322
15 C 0.346 3.654
16 N -0.465 5.465
17 C 0.068 3.932
18 C -0.110 4.110
19 C -0.102 4.102
20 C 0.055 3.945
21 H -0.007 1.007
22 C -0.536 4.536
23 H 0.054 0.946
24 C 0.018 3.982
25 N -0.913 5.913
26 Si 0.954 3.046
27 H -0.265 1.265
28 H -0.286 1.286
29 H -0.277 1.277
30 C 0.090 3.910
31 H 0.102 0.898
32 H 0.080 0.920
33 H 0.131 0.869
34 H 0.112 0.888
35 H 0.128 0.872
36 H 0.125 0.875
37 H 0.084 0.916
38 H 0.081 0.919
39 H 0.107 0.893
40 H 0.402 0.598
41 H 0.109 0.891
42 H 0.065 0.935
43 H 0.062 0.938
44 H 0.075 0.925
45 H 0.087 0.913
46 H 0.047 0.953
47 H 0.041 0.959
48 H 0.064 0.936
49 H 0.262 0.738
50 H 0.044 0.956
51 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.496 26.885 -7.221 29.413
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.087 4.087
2 N -0.191 5.191
3 C -0.081 4.081
4 C -0.060 4.060
5 C -0.094 4.094
6 H 0.098 0.902
7 C -0.162 4.162
8 C -0.020 4.020
9 N -0.362 5.362
10 C 0.304 3.696
11 O -0.502 6.502
12 C -0.165 4.165
13 N -0.167 5.167
14 N -0.163 5.163
15 C -0.010 4.010
16 N -0.190 5.190
17 C -0.059 4.059
18 C -0.148 4.148
19 C -0.140 4.140
20 C 0.036 3.964
21 H 0.011 0.989
22 C -0.574 4.574
23 H 0.073 0.927
24 C -0.182 4.182
25 N -0.552 5.552
26 Si 0.780 3.220
27 H -0.190 1.190
28 H -0.211 1.211
29 H -0.202 1.202
30 C -0.036 4.036
31 H 0.121 0.879
32 H 0.098 0.902
33 H 0.149 0.851
34 H 0.130 0.870
35 H 0.146 0.854
36 H 0.143 0.857
37 H 0.102 0.898
38 H 0.099 0.901
39 H 0.126 0.874
40 H 0.237 0.763
41 H 0.127 0.873
42 H 0.083 0.917
43 H 0.080 0.920
44 H 0.093 0.907
45 H 0.105 0.895
46 H 0.066 0.934
47 H 0.060 0.940
48 H 0.082 0.918
49 H 0.071 0.929
50 H 0.063 0.937
51 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -7.201 26.170 -7.463 28.150
hybrid contribution -1.615 -0.736 0.514 1.848
sum -8.816 25.434 -6.949 27.801
Atomic orbital electron populations
1.22685 0.73580 1.06716 1.05756 1.47519 1.10160 1.06673 1.54798
1.25525 0.86658 0.93266 1.02618 1.20407 1.05190 0.82452 0.97996
1.21213 0.94703 0.99192 0.94327 0.90242 1.21996 1.04415 0.93448
0.96322 1.21743 0.86560 1.03556 0.90146 1.45560 1.22444 1.44833
1.23348 1.20537 0.80969 0.78951 0.89132 1.90745 1.40655 1.66488
1.52315 1.21645 1.00896 1.00452 0.93475 1.74053 1.19677 1.02323
1.20666 1.74406 1.17416 1.03837 1.20645 1.23178 0.87812 0.86015
1.04026 1.59012 1.44883 1.09116 1.05967 1.22264 0.94358 0.98093
0.91139 1.21616 1.00583 0.93642 0.98920 1.21478 0.97202 1.02202
0.93157 1.18589 0.94425 0.88825 0.94521 0.98910 1.21349 1.39332
0.93917 1.02812 0.92737 1.25680 0.96402 0.96424 0.99664 1.70015
1.47834 1.01638 1.35695 0.85676 0.79229 0.77049 0.80082 1.18989
1.21148 1.20212 1.22173 0.95457 0.98928 0.87025 0.87923 0.90187
0.85053 0.86991 0.85433 0.85693 0.89755 0.90107 0.87437 0.76287
0.87310 0.91682 0.92009 0.90702 0.89500 0.93426 0.94034 0.91771
0.92930 0.93715 0.93322
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.79 9.33 127.77 1.19 1.98 16
2 N -0.49 -12.29 3.21 -538.20 -1.73 -14.02 16
3 C 0.19 4.44 6.62 137.64 0.91 5.35 16
4 C -0.02 -0.22 5.07 29.85 0.15 -0.07 16
5 C -0.07 -0.67 2.24 -10.65 -0.02 -0.70 16
6 H 0.08 0.76 8.13 -2.39 -0.02 0.74 16
7 C -0.12 -0.16 5.32 30.68 0.16 0.00 16
8 C 0.10 0.23 7.17 86.49 0.62 0.85 16
9 N -0.71 -8.27 5.45 -467.31 -2.55 -10.82 16
10 C 0.52 11.01 7.71 87.71 0.68 11.68 16
11 O -0.62 -20.39 17.78 -3.04 -0.05 -20.44 16
12 C -0.12 -2.31 4.98 29.71 0.15 -2.16 16
13 N -0.33 -11.20 11.91 -49.54 -0.59 -11.79 16
14 N -0.32 -13.14 12.23 -58.01 -0.71 -13.85 16
15 C 0.35 12.32 6.65 260.11 1.73 14.05 16
16 N -0.46 -17.71 4.70 -706.15 -3.32 -21.03 16
17 C 0.07 2.15 5.14 86.33 0.44 2.59 16
18 C -0.11 -3.90 6.09 30.65 0.19 -3.71 16
19 C -0.10 -4.48 5.02 30.67 0.15 -4.32 16
20 C 0.06 2.71 2.26 -11.49 -0.03 2.69 16
21 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16
22 C -0.54 -28.32 8.56 25.60 0.22 -28.10 16
23 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16
24 C 0.02 0.95 5.30 84.65 0.45 1.40 16
25 N -0.91 -51.39 11.35 21.45 0.24 -51.14 16
26 Si 0.95 42.04 29.54 68.60 2.03 44.07 16
27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16
28 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16
29 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16
30 C 0.09 3.72 4.47 86.32 0.39 4.10 16
31 H 0.10 1.08 7.96 -2.39 -0.02 1.06 16
32 H 0.08 1.52 4.97 -2.39 -0.01 1.51 16
33 H 0.13 0.82 7.25 -2.39 -0.02 0.80 16
34 H 0.11 1.05 8.09 -2.39 -0.02 1.03 16
35 H 0.13 0.36 7.26 -2.39 -0.02 0.34 16
36 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16
37 H 0.08 0.12 8.12 -2.39 -0.02 0.10 16
38 H 0.08 0.04 8.14 -2.39 -0.02 0.02 16
39 H 0.11 -0.25 8.14 -2.38 -0.02 -0.27 16
40 H 0.40 4.25 8.80 -92.71 -0.82 3.43 16
41 H 0.11 1.91 8.06 -2.39 -0.02 1.89 16
42 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16
43 H 0.06 1.61 5.68 -2.39 -0.01 1.59 16
44 H 0.07 2.26 8.10 -2.39 -0.02 2.24 16
45 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16
46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
47 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16
48 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16
49 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16
50 H 0.04 2.01 8.10 -2.39 -0.02 1.99 16
51 H 0.05 1.78 5.71 -2.39 -0.01 1.76 16
Total: -1.00 -83.44 392.44 0.84 -82.60
By element:
Atomic # 1 Polarization: 10.64 SS G_CDS: 0.13 Total: 10.77 kcal
Atomic # 6 Polarization: -1.74 SS G_CDS: 7.38 Total: 5.64 kcal
Atomic # 7 Polarization: -113.99 SS G_CDS: -8.65 Total: -122.63 kcal
Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal
Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal
Total: -83.44 0.84 -82.60 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001772168260.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.207 kcal
(2) G-P(sol) polarization free energy of solvation -83.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.600 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.607 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds