Wall clock time and date at job start Wed Apr 1 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36738 * 127.13769 * 2 1 4 4 C 1.50693 * 126.34640 * 359.96070 * 3 2 1 5 5 C 1.52998 * 109.47220 * 90.00175 * 4 3 2 6 6 H 1.09000 * 109.67492 * 305.49658 * 5 4 3 7 7 C 1.53346 * 109.67763 * 184.99612 * 5 4 3 8 8 C 1.52917 * 108.67494 * 172.73435 * 7 5 4 9 9 N 1.45750 * 110.49066 * 50.75582 * 8 7 5 10 10 C 1.33356 * 124.10421 * 340.90415 * 9 8 7 11 11 O 1.21283 * 118.24474 * 182.26701 * 10 9 8 12 12 C 1.50181 * 123.50771 * 2.26236 * 10 9 8 13 13 N 1.30296 * 107.30312 * 179.83021 * 3 2 1 14 14 N 1.28529 * 110.05539 * 0.44458 * 13 3 2 15 15 C 1.31224 * 109.85830 * 359.71656 * 14 13 3 16 16 N 1.38579 * 126.47194 * 180.02562 * 15 14 13 17 17 C 1.46852 * 110.99782 * 271.80516 * 16 15 14 18 18 C 1.53041 * 109.52216 * 185.83845 * 17 16 15 19 19 C 1.53116 * 109.27875 * 300.82239 * 18 17 16 20 20 C 1.53119 * 109.16162 * 57.65734 * 19 18 17 21 21 H 1.08993 * 109.50560 * 62.28519 * 20 19 18 22 22 C 1.50707 * 109.50469 * 182.40493 * 20 19 18 23 23 H 1.08002 * 119.99963 * 119.79522 * 22 20 19 24 24 C 1.37881 * 119.99670 * 299.80218 * 22 20 19 25 25 N 1.31513 * 119.99963 * 359.97438 * 24 22 20 26 26 Si 1.86797 * 119.99780 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47329 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47029 * 119.99723 * 26 24 22 29 29 H 1.48495 * 109.47233 * 239.99517 * 26 24 22 30 30 C 1.46845 * 111.00417 * 36.01716 * 16 15 14 31 31 H 1.08999 * 109.47539 * 264.81813 * 1 2 3 32 32 H 1.09005 * 109.47314 * 144.81144 * 1 2 3 33 33 H 1.09005 * 109.46797 * 24.82004 * 1 2 3 34 34 H 1.09000 * 109.46795 * 209.99841 * 4 3 2 35 35 H 1.08999 * 109.47762 * 329.99912 * 4 3 2 36 36 H 1.08997 * 109.60580 * 292.49215 * 7 5 4 37 37 H 1.09005 * 109.60064 * 52.81412 * 7 5 4 38 38 H 1.09004 * 109.29732 * 171.06438 * 8 7 5 39 39 H 1.09002 * 109.30411 * 290.64874 * 8 7 5 40 40 H 0.97001 * 117.95297 * 160.92087 * 9 8 7 41 41 H 1.08998 * 109.38886 * 222.26276 * 12 10 9 42 42 H 1.09003 * 109.41533 * 102.51661 * 12 10 9 43 43 H 1.08994 * 109.46097 * 305.85614 * 17 16 15 44 44 H 1.08998 * 109.46168 * 65.82732 * 17 16 15 45 45 H 1.09001 * 109.50197 * 180.88068 * 18 17 16 46 46 H 1.09002 * 109.49954 * 60.75946 * 18 17 16 47 47 H 1.09002 * 109.52303 * 297.75005 * 19 18 17 48 48 H 1.09001 * 109.57343 * 177.58902 * 19 18 17 49 49 H 0.96996 * 120.00071 * 180.02562 * 25 24 22 50 50 H 1.09009 * 109.46288 * 294.17893 * 30 16 15 51 51 H 1.08997 * 109.46304 * 54.15008 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5348 -0.0008 5 6 1.7164 3.0244 1.4414 6 1 1.0400 2.3657 1.9859 7 6 1.1614 4.4539 1.4478 8 6 0.8541 4.8533 2.8915 9 7 2.0040 4.5934 3.7486 10 6 3.0012 3.7667 3.4315 11 8 3.8862 3.5972 4.2433 12 6 3.0869 3.0345 2.1231 13 7 3.5162 0.6480 0.0037 14 7 3.5212 -0.6373 -0.0034 15 6 2.2887 -1.0878 -0.0059 16 7 1.8977 -2.4173 -0.0127 17 6 1.7909 -2.9274 -1.3857 18 6 1.2193 -4.3468 -1.3609 19 6 2.1389 -5.2477 -0.5319 20 6 2.2716 -4.6679 0.8791 21 1 1.2944 -4.6573 1.3616 22 6 3.2221 -5.5163 1.6843 23 1 4.1224 -5.0803 2.0915 24 6 2.9422 -6.8489 1.9008 25 7 1.8457 -7.3795 1.4052 26 14 4.1206 -7.9005 2.8982 27 1 5.2711 -7.0720 3.3397 28 1 3.4151 -8.4425 4.0873 29 1 4.6125 -9.0234 2.0602 30 6 2.8127 -3.2392 0.7894 31 1 -0.3634 -0.0928 1.0234 32 1 -0.3634 -0.8399 -0.5922 33 1 -0.3633 0.9328 -0.4314 34 1 2.6125 3.1359 -0.5145 35 1 0.9059 2.6301 -0.5152 36 1 1.9019 5.1356 1.0295 37 1 0.2492 4.4947 0.8524 38 1 0.6107 5.9152 2.9275 39 1 0.0024 4.2761 3.2516 40 1 2.0465 5.0501 4.6033 41 1 3.4095 2.0090 2.3028 42 1 3.8095 3.5319 1.4761 43 1 1.1309 -2.2801 -1.9632 44 1 2.7789 -2.9418 -1.8456 45 1 1.1548 -4.7309 -2.3789 46 1 0.2254 -4.3311 -0.9135 47 1 3.1219 -5.2945 -1.0005 48 1 1.7141 -6.2499 -0.4753 49 1 1.6486 -8.3169 1.5578 50 1 3.7961 -3.2521 0.3193 51 1 2.8949 -2.8185 1.7916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772168271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:55 Heat of formation + Delta-G solvation = 35.011907 kcal Electronic energy + Delta-G solvation = -31347.182429 eV Core-core repulsion = 27282.146630 eV Total energy + Delta-G solvation = -4065.035799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.84050 -40.52440 -38.36896 -37.23269 -35.09567 -34.66027 -33.69743 -31.96109 -30.36714 -30.00134 -29.73069 -27.53321 -27.25608 -25.04439 -24.24135 -23.78591 -22.33121 -21.62352 -20.88221 -20.48613 -19.55035 -18.60959 -17.65193 -17.26236 -16.65758 -16.23357 -16.14118 -15.78106 -15.57509 -15.09979 -14.69100 -14.51038 -14.26158 -14.09969 -13.83009 -13.75659 -13.41866 -13.29374 -12.88166 -12.81525 -12.64400 -12.50601 -12.47159 -12.10450 -11.93579 -11.79437 -11.44717 -11.25042 -11.15970 -10.96540 -10.82306 -10.70118 -10.36358 -10.21864 -10.05963 -9.97370 -9.92552 -9.58055 -9.41836 -9.25224 -9.08661 -8.72211 -8.35494 -8.04280 -6.00808 -4.06136 1.84874 2.36914 2.45263 2.98272 3.00568 3.31205 3.39408 3.45190 3.96213 4.10814 4.13459 4.20484 4.34263 4.46127 4.47597 4.55150 4.82509 4.90288 4.95764 4.99196 5.05558 5.16231 5.26216 5.27380 5.30795 5.31408 5.36175 5.40942 5.52503 5.66687 5.74763 5.78462 5.82486 5.89046 6.00373 6.18808 6.36666 6.38442 6.47337 6.52394 6.64808 6.75688 6.86049 7.03141 7.03579 7.27282 7.37421 7.69705 7.73940 7.98376 7.98713 8.09638 8.41916 8.94802 8.97698 9.58692 11.05653 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002564 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.552696 B =10916.791506 C =12142.242510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.474 5.474 3 C 0.157 3.843 4 C -0.019 4.019 5 C -0.087 4.087 6 H 0.080 0.920 7 C -0.131 4.131 8 C 0.112 3.888 9 N -0.725 5.725 10 C 0.520 3.480 11 O -0.554 6.554 12 C -0.127 4.127 13 N -0.281 5.281 14 N -0.315 5.315 15 C 0.369 3.631 16 N -0.466 5.466 17 C 0.073 3.927 18 C -0.116 4.116 19 C -0.114 4.114 20 C 0.056 3.944 21 H 0.035 0.965 22 C -0.512 4.512 23 H 0.057 0.943 24 C 0.064 3.936 25 N -0.890 5.890 26 Si 0.891 3.109 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.284 1.284 30 C 0.083 3.917 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.398 0.602 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.056 0.944 44 H 0.042 0.958 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.095 0.905 49 H 0.259 0.741 50 H 0.045 0.955 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.134 24.803 -5.207 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.168 5.168 3 C -0.110 4.110 4 C -0.059 4.059 5 C -0.107 4.107 6 H 0.098 0.902 7 C -0.169 4.169 8 C -0.013 4.013 9 N -0.378 5.378 10 C 0.307 3.693 11 O -0.432 6.432 12 C -0.167 4.167 13 N -0.122 5.122 14 N -0.159 5.159 15 C 0.013 3.987 16 N -0.192 5.192 17 C -0.054 4.054 18 C -0.153 4.153 19 C -0.152 4.152 20 C 0.037 3.963 21 H 0.053 0.947 22 C -0.551 4.551 23 H 0.075 0.925 24 C -0.137 4.137 25 N -0.529 5.529 26 Si 0.719 3.281 27 H -0.197 1.197 28 H -0.211 1.211 29 H -0.210 1.210 30 C -0.042 4.042 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.113 0.887 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.745 24.354 -4.811 26.320 hybrid contribution -0.338 -0.482 0.522 0.786 sum -9.083 23.873 -4.290 25.900 Atomic orbital electron populations 1.21974 0.75648 1.04207 1.04279 1.46173 1.08605 1.06145 1.55875 1.24508 0.87529 0.91195 1.07775 1.20002 1.02769 0.86173 0.96939 1.21279 0.97075 0.96739 0.95568 0.90171 1.21946 1.02747 0.96214 0.96008 1.21358 0.88109 1.01314 0.90509 1.45515 1.22890 1.46835 1.22601 1.20304 0.80915 0.78634 0.89398 1.90785 1.38291 1.63964 1.50116 1.21722 0.98378 1.03089 0.93522 1.73987 1.17123 1.03616 1.17459 1.74739 1.16958 1.02798 1.21367 1.22834 0.85410 0.88982 1.01469 1.58969 1.51113 0.94958 1.14165 1.22132 0.99939 0.97352 0.86012 1.21710 1.00686 0.92984 0.99968 1.21710 0.96742 1.00954 0.95795 1.18721 0.97131 0.87137 0.93284 0.94710 1.21140 1.07078 0.94452 1.32446 0.92465 1.24911 0.95275 0.97855 0.95707 1.69886 1.24647 1.13106 1.45230 0.86539 0.81239 0.80355 0.79934 1.19679 1.21054 1.21037 1.22403 0.92530 0.94580 0.94727 0.90114 0.88962 0.89799 0.88050 0.89622 0.90321 0.89359 0.90358 0.91607 0.76702 0.87675 0.87538 0.92546 0.93974 0.92640 0.91859 0.94570 0.88658 0.93073 0.93701 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 11.10 59.85 0.66 1.37 16 2 N -0.47 -6.30 3.21 -121.45 -0.39 -6.69 16 3 C 0.16 1.99 6.62 -154.02 -1.02 0.97 16 4 C -0.02 -0.13 5.05 -27.89 -0.14 -0.28 16 5 C -0.09 -0.58 2.24 -90.40 -0.20 -0.78 16 6 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 7 C -0.13 -0.46 5.32 -26.59 -0.14 -0.60 16 8 C 0.11 0.43 7.17 -4.49 -0.03 0.40 16 9 N -0.73 -5.44 5.45 -61.39 -0.33 -5.78 16 10 C 0.52 6.01 7.71 -11.87 -0.09 5.92 16 11 O -0.55 -9.20 17.78 5.55 0.10 -9.10 16 12 C -0.13 -1.30 4.98 -28.10 -0.14 -1.44 16 13 N -0.28 -4.79 11.90 32.99 0.39 -4.39 16 14 N -0.31 -6.20 11.69 30.32 0.35 -5.85 16 15 C 0.37 6.52 6.71 -318.87 -2.14 4.38 16 16 N -0.47 -8.68 4.67 -174.55 -0.82 -9.49 16 17 C 0.07 1.24 5.40 -3.83 -0.02 1.22 16 18 C -0.12 -2.08 6.09 -26.65 -0.16 -2.24 16 19 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 20 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 21 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 22 C -0.51 -14.02 8.56 -34.44 -0.29 -14.31 16 23 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 24 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 25 N -0.89 -24.88 11.36 55.43 0.63 -24.25 16 26 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 C 0.08 1.83 4.31 -3.84 -0.02 1.82 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.42 7.11 -51.93 -0.37 0.05 16 34 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.09 0.37 7.18 -51.93 -0.37 -0.01 16 36 H 0.08 0.26 8.12 -51.93 -0.42 -0.16 16 37 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.40 2.69 8.80 -40.82 -0.36 2.33 16 41 H 0.10 1.44 7.57 -51.93 -0.39 1.05 16 42 H 0.11 1.00 8.06 -51.93 -0.42 0.58 16 43 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 49 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.04 1.05 8.06 -51.92 -0.42 0.63 16 51 H 0.06 1.45 8.10 -51.93 -0.42 1.03 16 LS Contribution 401.75 15.07 6.05 6.05 Total: -1.00 -35.30 401.75 -11.73 -47.04 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -8.53 Total: -0.42 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -4.17 Total: -3.47 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.16 Total: -56.45 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.10 Total: -9.10 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.30 -11.73 -47.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772168271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.047 kcal (2) G-P(sol) polarization free energy of solvation -35.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds