Wall clock time and date at job start Wed Apr 1 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36738 * 127.13769 * 2 1 4 4 C 1.50693 * 126.34640 * 359.96070 * 3 2 1 5 5 C 1.52998 * 109.47220 * 90.00175 * 4 3 2 6 6 H 1.09000 * 109.67492 * 305.49658 * 5 4 3 7 7 C 1.53346 * 109.67763 * 184.99612 * 5 4 3 8 8 C 1.52917 * 108.67494 * 172.73435 * 7 5 4 9 9 N 1.45750 * 110.49066 * 50.75582 * 8 7 5 10 10 C 1.33356 * 124.10421 * 340.90415 * 9 8 7 11 11 O 1.21283 * 118.24474 * 182.26701 * 10 9 8 12 12 C 1.50181 * 123.50771 * 2.26236 * 10 9 8 13 13 N 1.30296 * 107.30312 * 179.83021 * 3 2 1 14 14 N 1.28529 * 110.05539 * 0.44458 * 13 3 2 15 15 C 1.31224 * 109.85830 * 359.71656 * 14 13 3 16 16 N 1.38579 * 126.47194 * 180.02562 * 15 14 13 17 17 C 1.46852 * 110.99782 * 271.80516 * 16 15 14 18 18 C 1.53041 * 109.52216 * 185.83845 * 17 16 15 19 19 C 1.53116 * 109.27875 * 300.82239 * 18 17 16 20 20 C 1.53119 * 109.16162 * 57.65734 * 19 18 17 21 21 H 1.08993 * 109.50560 * 62.28519 * 20 19 18 22 22 C 1.50707 * 109.50469 * 182.40493 * 20 19 18 23 23 H 1.08002 * 119.99963 * 119.79522 * 22 20 19 24 24 C 1.37881 * 119.99670 * 299.80218 * 22 20 19 25 25 N 1.31513 * 119.99963 * 359.97438 * 24 22 20 26 26 Si 1.86797 * 119.99780 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47329 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.47029 * 119.99723 * 26 24 22 29 29 H 1.48495 * 109.47233 * 239.99517 * 26 24 22 30 30 C 1.46845 * 111.00417 * 36.01716 * 16 15 14 31 31 H 1.08999 * 109.47539 * 264.81813 * 1 2 3 32 32 H 1.09005 * 109.47314 * 144.81144 * 1 2 3 33 33 H 1.09005 * 109.46797 * 24.82004 * 1 2 3 34 34 H 1.09000 * 109.46795 * 209.99841 * 4 3 2 35 35 H 1.08999 * 109.47762 * 329.99912 * 4 3 2 36 36 H 1.08997 * 109.60580 * 292.49215 * 7 5 4 37 37 H 1.09005 * 109.60064 * 52.81412 * 7 5 4 38 38 H 1.09004 * 109.29732 * 171.06438 * 8 7 5 39 39 H 1.09002 * 109.30411 * 290.64874 * 8 7 5 40 40 H 0.97001 * 117.95297 * 160.92087 * 9 8 7 41 41 H 1.08998 * 109.38886 * 222.26276 * 12 10 9 42 42 H 1.09003 * 109.41533 * 102.51661 * 12 10 9 43 43 H 1.08994 * 109.46097 * 305.85614 * 17 16 15 44 44 H 1.08998 * 109.46168 * 65.82732 * 17 16 15 45 45 H 1.09001 * 109.50197 * 180.88068 * 18 17 16 46 46 H 1.09002 * 109.49954 * 60.75946 * 18 17 16 47 47 H 1.09002 * 109.52303 * 297.75005 * 19 18 17 48 48 H 1.09001 * 109.57343 * 177.58902 * 19 18 17 49 49 H 0.96996 * 120.00071 * 180.02562 * 25 24 22 50 50 H 1.09009 * 109.46288 * 294.17893 * 30 16 15 51 51 H 1.08997 * 109.46304 * 54.15008 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2905 1.0901 0.0000 4 6 1.8622 2.5348 -0.0008 5 6 1.7164 3.0244 1.4414 6 1 1.0400 2.3657 1.9859 7 6 1.1614 4.4539 1.4478 8 6 0.8541 4.8533 2.8915 9 7 2.0040 4.5934 3.7486 10 6 3.0012 3.7667 3.4315 11 8 3.8862 3.5972 4.2433 12 6 3.0869 3.0345 2.1231 13 7 3.5162 0.6480 0.0037 14 7 3.5212 -0.6373 -0.0034 15 6 2.2887 -1.0878 -0.0059 16 7 1.8977 -2.4173 -0.0127 17 6 1.7909 -2.9274 -1.3857 18 6 1.2193 -4.3468 -1.3609 19 6 2.1389 -5.2477 -0.5319 20 6 2.2716 -4.6679 0.8791 21 1 1.2944 -4.6573 1.3616 22 6 3.2221 -5.5163 1.6843 23 1 4.1224 -5.0803 2.0915 24 6 2.9422 -6.8489 1.9008 25 7 1.8457 -7.3795 1.4052 26 14 4.1206 -7.9005 2.8982 27 1 5.2711 -7.0720 3.3397 28 1 3.4151 -8.4425 4.0873 29 1 4.6125 -9.0234 2.0602 30 6 2.8127 -3.2392 0.7894 31 1 -0.3634 -0.0928 1.0234 32 1 -0.3634 -0.8399 -0.5922 33 1 -0.3633 0.9328 -0.4314 34 1 2.6125 3.1359 -0.5145 35 1 0.9059 2.6301 -0.5152 36 1 1.9019 5.1356 1.0295 37 1 0.2492 4.4947 0.8524 38 1 0.6107 5.9152 2.9275 39 1 0.0024 4.2761 3.2516 40 1 2.0465 5.0501 4.6033 41 1 3.4095 2.0090 2.3028 42 1 3.8095 3.5319 1.4761 43 1 1.1309 -2.2801 -1.9632 44 1 2.7789 -2.9418 -1.8456 45 1 1.1548 -4.7309 -2.3789 46 1 0.2254 -4.3311 -0.9135 47 1 3.1219 -5.2945 -1.0005 48 1 1.7141 -6.2499 -0.4753 49 1 1.6486 -8.3169 1.5578 50 1 3.7961 -3.2521 0.3193 51 1 2.8949 -2.8185 1.7916 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772168271.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:54 Heat of formation + Delta-G solvation = 11.406576 kcal Electronic energy + Delta-G solvation = -31348.206033 eV Core-core repulsion = 27282.146630 eV Total energy + Delta-G solvation = -4066.059403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.00250 -41.29345 -39.94943 -38.01067 -36.05379 -35.89248 -35.09561 -33.60868 -31.85112 -31.19370 -30.51429 -28.48536 -28.13303 -27.04133 -25.40330 -24.75364 -23.37297 -23.03084 -22.18824 -21.45351 -20.36199 -20.09350 -18.81939 -18.35500 -17.88383 -17.40013 -17.26965 -16.88293 -16.59222 -16.47355 -15.87690 -15.51974 -15.44320 -15.29441 -14.89795 -14.57073 -14.53868 -14.47052 -14.31836 -14.12470 -13.89129 -13.58812 -13.36595 -13.16580 -12.89839 -12.74958 -12.69211 -12.62713 -12.60711 -12.32918 -11.95508 -11.86265 -11.83036 -11.76430 -11.59261 -11.37280 -11.09944 -11.05770 -10.94190 -10.77998 -10.42978 -10.27202 -10.05947 -9.49946 -8.12810 -6.25436 0.73306 1.30841 1.37821 1.40557 1.52113 1.56116 1.80175 2.35215 2.40615 2.79375 3.14806 3.31362 3.54181 3.66200 3.79360 3.88934 3.89659 3.94271 4.08556 4.11693 4.31960 4.36447 4.38218 4.41934 4.47428 4.52835 4.55587 4.58083 4.69621 4.71983 4.78749 4.83104 4.83962 4.93550 4.94895 4.98384 5.02449 5.07824 5.09372 5.16327 5.27281 5.38933 5.43489 5.60437 5.67560 5.76795 5.84801 5.97111 6.10202 6.32417 6.33467 6.36063 6.83044 7.18421 7.41969 7.75325 8.92312 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002564 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.552696 B =10916.791506 C =12142.242510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.466 5.466 3 C 0.186 3.814 4 C -0.018 4.018 5 C -0.077 4.077 6 H 0.076 0.924 7 C -0.122 4.122 8 C 0.101 3.899 9 N -0.712 5.712 10 C 0.514 3.486 11 O -0.621 6.621 12 C -0.125 4.125 13 N -0.328 5.328 14 N -0.363 5.363 15 C 0.344 3.656 16 N -0.460 5.460 17 C 0.077 3.923 18 C -0.104 4.104 19 C -0.107 4.107 20 C 0.059 3.941 21 H 0.009 0.991 22 C -0.540 4.540 23 H 0.042 0.958 24 C 0.023 3.977 25 N -0.908 5.908 26 Si 0.950 3.050 27 H -0.276 1.276 28 H -0.277 1.277 29 H -0.276 1.276 30 C 0.105 3.895 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.401 0.599 41 H 0.059 0.941 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.022 0.978 48 H 0.069 0.931 49 H 0.263 0.737 50 H 0.023 0.977 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 27.780 -6.947 31.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.159 5.159 3 C -0.083 4.083 4 C -0.057 4.057 5 C -0.097 4.097 6 H 0.095 0.905 7 C -0.160 4.160 8 C -0.021 4.021 9 N -0.362 5.362 10 C 0.302 3.698 11 O -0.504 6.504 12 C -0.165 4.165 13 N -0.168 5.168 14 N -0.207 5.207 15 C -0.014 4.014 16 N -0.185 5.185 17 C -0.050 4.050 18 C -0.141 4.141 19 C -0.145 4.145 20 C 0.040 3.960 21 H 0.027 0.973 22 C -0.578 4.578 23 H 0.060 0.940 24 C -0.177 4.177 25 N -0.547 5.547 26 Si 0.776 3.224 27 H -0.200 1.200 28 H -0.202 1.202 29 H -0.201 1.201 30 C -0.022 4.022 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.153 0.847 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.237 0.763 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.041 0.959 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.165 27.374 -6.579 30.669 hybrid contribution 0.634 -1.275 1.098 1.798 sum -11.531 26.099 -5.481 29.054 Atomic orbital electron populations 1.22430 0.72512 1.06959 1.05161 1.46396 1.10258 1.04647 1.54646 1.25625 0.86240 0.93175 1.03255 1.20409 1.05508 0.82065 0.97688 1.21243 0.94462 0.99369 0.94611 0.90541 1.21991 1.04549 0.93224 0.96215 1.21780 0.86565 1.03593 0.90185 1.45567 1.22610 1.44797 1.23214 1.20573 0.80980 0.78960 0.89239 1.90748 1.41117 1.66444 1.52089 1.21654 1.01204 1.00180 0.93501 1.73893 1.19964 1.02626 1.20313 1.74594 1.18919 1.04538 1.22609 1.22666 0.86098 0.89153 1.03457 1.58873 1.49506 0.95456 1.14649 1.22163 0.99943 0.97387 0.85506 1.21592 0.99399 0.92585 1.00572 1.21510 0.97018 1.00606 0.95415 1.18589 0.95071 0.88367 0.93926 0.97283 1.21432 1.07339 0.95538 1.33527 0.93957 1.25581 0.96769 0.98764 0.96578 1.69984 1.25610 1.13481 1.45671 0.85628 0.79231 0.78746 0.78796 1.20047 1.20240 1.20125 1.21878 0.92131 0.93942 0.94208 0.89676 0.89077 0.84772 0.86801 0.84748 0.89628 0.85292 0.87241 0.90244 0.76328 0.92226 0.87139 0.88718 0.95423 0.89724 0.91403 0.95937 0.91273 0.92761 0.95895 0.94065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 11.10 127.77 1.42 2.35 16 2 N -0.47 -11.48 3.21 -538.17 -1.73 -13.21 16 3 C 0.19 4.36 6.62 137.64 0.91 5.27 16 4 C -0.02 -0.17 5.05 29.84 0.15 -0.02 16 5 C -0.08 -0.76 2.24 -10.65 -0.02 -0.79 16 6 H 0.08 0.87 8.13 -2.39 -0.02 0.85 16 7 C -0.12 -0.17 5.32 30.68 0.16 -0.01 16 8 C 0.10 0.32 7.17 86.49 0.62 0.94 16 9 N -0.71 -9.43 5.45 -467.31 -2.55 -11.98 16 10 C 0.51 12.07 7.71 87.71 0.68 12.75 16 11 O -0.62 -22.08 17.78 -3.04 -0.05 -22.13 16 12 C -0.13 -2.56 4.98 29.71 0.15 -2.41 16 13 N -0.33 -11.41 11.90 -49.54 -0.59 -12.00 16 14 N -0.36 -14.94 11.69 -58.00 -0.68 -15.62 16 15 C 0.34 12.28 6.71 260.11 1.75 14.03 16 16 N -0.46 -17.42 4.67 -706.14 -3.30 -20.72 16 17 C 0.08 2.55 5.40 86.33 0.47 3.02 16 18 C -0.10 -3.65 6.09 30.65 0.19 -3.47 16 19 C -0.11 -5.04 5.03 30.67 0.15 -4.88 16 20 C 0.06 3.07 2.26 -11.49 -0.03 3.05 16 21 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 22 C -0.54 -31.09 8.56 25.60 0.22 -30.87 16 23 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 24 C 0.02 1.28 5.30 84.66 0.45 1.72 16 25 N -0.91 -52.00 11.36 21.45 0.24 -51.75 16 26 Si 0.95 44.95 29.54 68.60 2.03 46.98 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 30 C 0.11 4.96 4.31 86.33 0.37 5.33 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.13 0.42 7.11 -2.38 -0.02 0.40 16 34 H 0.11 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.13 0.11 7.18 -2.39 -0.02 0.09 16 36 H 0.09 0.10 8.12 -2.39 -0.02 0.09 16 37 H 0.13 -0.70 8.14 -2.38 -0.02 -0.72 16 38 H 0.11 -0.20 8.14 -2.38 -0.02 -0.22 16 39 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.40 4.93 8.80 -92.71 -0.82 4.11 16 41 H 0.06 1.78 7.57 -2.39 -0.02 1.76 16 42 H 0.11 2.08 8.06 -2.39 -0.02 2.06 16 43 H 0.09 2.48 8.10 -2.39 -0.02 2.46 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.07 3.61 6.16 -2.39 -0.01 3.60 16 49 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 50 H 0.02 1.15 8.06 -2.38 -0.02 1.13 16 51 H 0.04 2.06 8.10 -2.39 -0.02 2.04 16 Total: -1.00 -87.52 401.75 1.12 -86.40 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.12 Total: 8.02 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 7.63 Total: 6.01 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -8.59 Total: -125.28 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -87.52 1.12 -86.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772168271.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.804 kcal (2) G-P(sol) polarization free energy of solvation -87.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds