Wall clock time and date at job start Wed Apr 1 2020 04:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.46925 * 2 1 4 4 C 1.36735 * 127.13829 * 94.52199 * 3 2 1 5 5 C 1.50700 * 126.34556 * 0.04687 * 4 3 2 6 6 N 1.46504 * 109.46782 * 95.55760 * 5 4 3 7 7 C 1.46769 * 124.35189 * 274.62911 * 6 5 4 8 8 C 1.54658 * 105.38136 * 162.85330 * 7 6 5 9 9 C 1.54627 * 101.68724 * 25.77003 * 8 7 6 10 10 C 1.34423 * 124.35136 * 94.92677 * 6 5 4 11 11 O 1.21280 * 124.93822 * 0.38764 * 10 6 5 12 12 N 1.30289 * 107.30815 * 180.02562 * 4 3 2 13 13 N 1.28529 * 110.05350 * 359.72896 * 12 4 3 14 14 C 1.31221 * 109.85847 * 0.44744 * 13 12 4 15 15 N 1.38579 * 126.47422 * 179.82757 * 14 13 12 16 16 C 1.46846 * 111.00070 * 106.45861 * 15 14 13 17 17 C 1.53038 * 109.51825 * 174.15994 * 16 15 14 18 18 C 1.53119 * 109.27769 * 59.18477 * 17 16 15 19 19 C 1.53113 * 109.16070 * 302.34006 * 18 17 16 20 20 H 1.09010 * 109.50237 * 297.71577 * 19 18 17 21 21 C 1.50698 * 109.53745 * 177.62037 * 19 18 17 22 22 H 1.08003 * 119.99630 * 275.19359 * 21 19 18 23 23 C 1.37873 * 120.00258 * 95.19129 * 21 19 18 24 24 N 1.31522 * 119.99863 * 184.80507 * 23 21 19 25 25 Si 1.86795 * 120.00275 * 4.81295 * 23 21 19 26 26 H 1.48497 * 109.47608 * 84.93628 * 25 23 21 27 27 H 1.48496 * 109.47309 * 204.94119 * 25 23 21 28 28 H 1.48509 * 109.46623 * 324.93736 * 25 23 21 29 29 C 1.46850 * 110.99810 * 342.24756 * 15 14 13 30 30 H 1.08998 * 109.46499 * 184.99253 * 1 2 3 31 31 H 1.09003 * 109.46695 * 304.99203 * 1 2 3 32 32 H 1.08999 * 109.46910 * 64.98899 * 1 2 3 33 33 H 1.09002 * 109.46842 * 240.00549 * 2 1 3 34 34 H 1.08992 * 109.47545 * 120.00155 * 2 1 3 35 35 H 1.08997 * 109.47788 * 215.55294 * 5 4 3 36 36 H 1.09002 * 109.47289 * 335.55896 * 5 4 3 37 37 H 1.09005 * 110.24352 * 281.98506 * 7 6 5 38 38 H 1.08997 * 110.24059 * 43.98103 * 7 6 5 39 39 H 1.09004 * 111.19077 * 267.58974 * 8 7 6 40 40 H 1.09004 * 110.84888 * 143.79671 * 8 7 6 41 41 H 1.08999 * 110.48518 * 216.31100 * 9 8 7 42 42 H 1.08998 * 110.60219 * 93.71849 * 9 8 7 43 43 H 1.08996 * 109.46436 * 294.17848 * 16 15 14 44 44 H 1.08996 * 109.46052 * 54.14669 * 16 15 14 45 45 H 1.08998 * 109.50786 * 299.24069 * 17 16 15 46 46 H 1.09007 * 109.50003 * 179.11945 * 17 16 15 47 47 H 1.09008 * 109.51925 * 182.43712 * 18 17 16 48 48 H 1.08993 * 109.57595 * 62.27831 * 18 17 16 49 49 H 0.97001 * 119.99862 * 179.97438 * 24 23 21 50 50 H 1.08997 * 109.46626 * 305.86040 * 29 15 14 51 51 H 1.09002 * 109.46016 * 65.82560 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3745 2.1310 1.0866 5 6 2.3401 1.6888 2.5269 6 7 3.6668 1.2095 2.9224 7 6 4.1515 -0.1589 2.7061 8 6 5.6880 -0.0795 2.8630 9 6 5.8455 1.1517 3.7852 10 6 4.5946 1.9649 3.5350 11 8 4.4501 3.1292 3.8422 12 7 2.7496 3.2983 0.6461 13 7 2.6608 3.3350 -0.6356 14 6 2.2116 2.1867 -1.0844 15 7 1.9823 1.8530 -2.4097 16 6 3.0110 0.9299 -2.9055 17 6 2.6473 0.4705 -4.3193 18 6 2.5458 1.6918 -5.2372 19 6 1.5025 2.6596 -4.6724 20 1 0.5266 2.1742 -4.6566 21 6 1.4374 3.8918 -5.5376 22 1 2.1309 4.7034 -5.3743 23 6 0.4927 3.9828 -6.5377 24 7 0.4958 5.0147 -7.3532 25 14 -0.7918 2.6409 -6.7342 26 1 -1.9338 2.9116 -5.8245 27 1 -1.2726 2.6178 -8.1390 28 1 -0.1899 1.3262 -6.3954 29 6 1.8992 3.0556 -3.2484 30 1 -0.3632 -1.0238 0.0894 31 1 -0.3633 0.5894 0.8419 32 1 -0.3633 0.4345 -0.9313 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.0545 2.5298 3.1586 36 1 1.6137 0.8843 2.6427 37 1 3.7276 -0.8314 3.4520 38 1 3.8928 -0.4964 1.7025 39 1 6.1741 0.0883 1.9018 40 1 6.0760 -0.9782 3.3424 41 1 6.7327 1.7225 3.5112 42 1 5.8982 0.8443 4.8296 43 1 3.9754 1.4375 -2.9254 44 1 3.0701 0.0640 -2.2462 45 1 1.6895 -0.0494 -4.2979 46 1 3.4191 -0.2025 -4.6930 47 1 2.2445 1.3732 -6.2353 48 1 3.5137 2.1900 -5.2906 49 1 -0.1687 5.0786 -8.0570 50 1 1.1509 3.7336 -2.8381 51 1 2.8688 3.5533 -3.2667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772231870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:33 Heat of formation + Delta-G solvation = 53.874693 kcal Electronic energy + Delta-G solvation = -32014.297901 eV Core-core repulsion = 27950.080054 eV Total energy + Delta-G solvation = -4064.217847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.91014 -40.56583 -38.60931 -36.71202 -35.80203 -34.25184 -33.36460 -32.21755 -30.70510 -30.44447 -29.56414 -27.95782 -26.64655 -25.19132 -24.55811 -23.74588 -22.45902 -21.69714 -21.12805 -20.67368 -19.68857 -18.82954 -17.56492 -17.23326 -16.95438 -16.66617 -16.11746 -15.96240 -15.59263 -15.12898 -14.44888 -14.32690 -14.20447 -14.09306 -13.95074 -13.73605 -13.44523 -13.24214 -13.20968 -13.04255 -12.80813 -12.63204 -12.56983 -12.44037 -12.30699 -11.95022 -11.64335 -11.44852 -11.35165 -11.19805 -11.08227 -10.80661 -10.45528 -10.32397 -10.15285 -10.06673 -9.92296 -9.68075 -9.53550 -9.41831 -9.19621 -8.99984 -8.54392 -8.04915 -6.09343 -4.09635 1.66421 2.18071 2.41281 2.63209 3.16517 3.27800 3.35866 3.36975 3.90634 3.93964 4.00727 4.16312 4.25109 4.37202 4.40170 4.53197 4.62643 4.67113 4.76197 4.95130 5.01584 5.04043 5.15294 5.18147 5.23213 5.26349 5.31615 5.34553 5.38968 5.48844 5.52576 5.59687 5.65781 5.82991 5.87067 5.96693 6.06096 6.08104 6.16197 6.22269 6.33159 6.59359 6.62292 6.68839 6.75260 6.83001 7.05612 7.27136 7.41122 7.52876 7.75085 7.89807 8.49884 8.94741 8.97157 9.52750 11.03762 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018558 B = 0.002761 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.419493 B =10139.275774 C =10363.979872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.475 5.475 4 C 0.133 3.867 5 C 0.223 3.777 6 N -0.619 5.619 7 C 0.100 3.900 8 C -0.131 4.131 9 C -0.154 4.154 10 C 0.519 3.481 11 O -0.512 6.512 12 N -0.258 5.258 13 N -0.317 5.317 14 C 0.377 3.623 15 N -0.462 5.462 16 C 0.068 3.932 17 C -0.119 4.119 18 C -0.116 4.116 19 C 0.022 3.978 20 H 0.039 0.961 21 C -0.512 4.512 22 H 0.075 0.925 23 C 0.073 3.927 24 N -0.897 5.897 25 Si 0.878 3.122 26 H -0.276 1.276 27 H -0.291 1.291 28 H -0.264 1.264 29 C 0.088 3.912 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.044 0.956 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.264 0.736 50 H 0.077 0.923 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -20.514 21.295 30.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 N -0.172 5.172 4 C -0.136 4.136 5 C 0.098 3.902 6 N -0.355 5.355 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.194 4.194 10 C 0.306 3.694 11 O -0.386 6.386 12 N -0.098 5.098 13 N -0.162 5.162 14 C 0.021 3.979 15 N -0.187 5.187 16 C -0.059 4.059 17 C -0.157 4.157 18 C -0.154 4.154 19 C 0.003 3.997 20 H 0.057 0.943 21 C -0.550 4.550 22 H 0.093 0.907 23 C -0.129 4.129 24 N -0.535 5.535 25 Si 0.706 3.294 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.188 1.188 29 C -0.037 4.037 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.136 0.864 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.095 0.905 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.637 -18.593 21.232 28.780 hybrid contribution -0.675 -1.716 -0.404 1.888 sum 4.962 -20.309 20.828 29.511 Atomic orbital electron populations 1.22136 0.93434 1.03011 1.04076 1.21863 0.96424 0.79207 1.04088 1.46337 1.51075 1.13669 1.06074 1.24955 1.06750 0.90169 0.91697 1.19415 0.83641 1.01068 0.86039 1.48305 1.15151 1.12177 1.59885 1.22164 0.94967 0.83260 1.01869 1.22612 0.94751 0.98632 1.00906 1.22330 0.97709 0.97255 1.02137 1.20950 0.85423 0.86475 0.76506 1.90783 1.80781 1.15257 1.51796 1.74062 1.16127 1.16202 1.03445 1.74830 1.19744 1.18745 1.02887 1.22937 0.98189 0.88067 0.88699 1.58986 1.44690 1.19472 0.95504 1.22145 0.92206 0.94358 0.97213 1.21712 1.01238 0.99336 0.93369 1.21940 1.00983 0.94435 0.98059 1.19203 0.94822 0.95637 0.90049 0.94255 1.20888 1.17733 1.01892 1.14513 0.90710 1.25045 0.97234 0.95388 0.95201 1.69909 1.35575 1.29911 1.18082 0.86845 0.82360 0.83197 0.77025 1.20210 1.21711 1.18834 1.22381 1.01626 0.86769 0.92958 0.90512 0.92042 0.90618 0.88563 0.89496 0.86402 0.88757 0.90525 0.90941 0.89963 0.88973 0.87897 0.87671 0.93744 0.92112 0.91655 0.91989 0.92358 0.92662 0.92583 0.90456 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.11 0.89 6.57 -4.04 -0.03 0.86 16 3 N -0.48 -6.23 2.81 -114.08 -0.32 -6.55 16 4 C 0.13 1.86 7.65 -154.02 -1.18 0.69 16 5 C 0.22 2.19 6.23 -5.19 -0.03 2.16 16 6 N -0.62 -5.63 2.92 -173.66 -0.51 -6.13 16 7 C 0.10 0.51 7.36 -3.02 -0.02 0.49 16 8 C -0.13 -0.59 7.19 -25.00 -0.18 -0.77 16 9 C -0.15 -1.03 6.86 -26.74 -0.18 -1.21 16 10 C 0.52 5.89 8.02 -10.86 -0.09 5.81 16 11 O -0.51 -8.33 17.52 5.56 0.10 -8.23 16 12 N -0.26 -4.90 12.18 32.99 0.40 -4.50 16 13 N -0.32 -6.48 11.45 30.31 0.35 -6.13 16 14 C 0.38 6.53 6.90 -318.87 -2.20 4.33 16 15 N -0.46 -8.06 4.67 -174.55 -0.82 -8.87 16 16 C 0.07 1.01 5.32 -3.83 -0.02 0.99 16 17 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 18 C -0.12 -2.29 5.27 -26.61 -0.14 -2.43 16 19 C 0.02 0.51 1.92 -91.70 -0.18 0.33 16 20 H 0.04 0.91 5.29 -51.92 -0.27 0.64 16 21 C -0.51 -14.10 8.87 -34.44 -0.31 -14.41 16 22 H 0.07 2.27 8.06 -52.48 -0.42 1.85 16 23 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 24 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 25 Si 0.88 21.14 26.99 -169.99 -4.59 16.55 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.26 -5.95 6.82 56.52 0.39 -5.56 16 29 C 0.09 1.87 4.14 -3.83 -0.02 1.85 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.78 6.19 -51.93 -0.32 0.46 16 34 H 0.09 0.45 6.60 -51.93 -0.34 0.10 16 35 H 0.12 1.29 7.82 -51.93 -0.41 0.88 16 36 H 0.09 0.57 7.54 -51.93 -0.39 0.18 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.36 7.23 -51.93 -0.38 -0.02 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.73 6.17 -51.93 -0.32 0.40 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 48 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.08 1.77 8.10 -51.93 -0.42 1.35 16 51 H 0.05 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -36.79 402.87 -11.33 -48.12 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.34 Total: -1.61 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.45 Total: -2.27 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: -0.12 Total: -58.63 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.10 Total: -8.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.59 Total: 16.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.79 -11.33 -48.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772231870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.998 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds