Wall clock time and date at job start Wed Apr 1 2020 04:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46950 * 2 1 4 4 C 1.36741 * 127.13900 * 81.89801 * 3 2 1 5 5 C 1.50706 * 126.34510 * 359.96695 * 4 3 2 6 6 N 1.46494 * 109.47293 * 95.38308 * 5 4 3 7 7 C 1.46772 * 124.34911 * 83.42008 * 6 5 4 8 8 C 1.54479 * 105.47221 * 197.01660 * 7 6 5 9 9 C 1.54625 * 101.76878 * 334.58644 * 8 7 6 10 10 C 1.34420 * 124.35172 * 263.12328 * 6 5 4 11 11 O 1.21280 * 124.94045 * 359.56752 * 10 6 5 12 12 N 1.30292 * 107.30751 * 179.83000 * 4 3 2 13 13 N 1.28526 * 110.05100 * 0.44970 * 12 4 3 14 14 C 1.31217 * 109.86394 * 359.70927 * 13 12 4 15 15 N 1.38580 * 126.47345 * 180.02562 * 14 13 12 16 16 C 1.46852 * 110.99695 * 263.57033 * 15 14 13 17 17 C 1.53036 * 109.51971 * 185.84289 * 16 15 14 18 18 C 1.53129 * 109.27802 * 300.81907 * 17 16 15 19 19 C 1.53116 * 109.15783 * 57.65879 * 18 17 16 20 20 H 1.09002 * 109.50492 * 62.28409 * 19 18 17 21 21 C 1.50701 * 109.50229 * 182.40546 * 19 18 17 22 22 H 1.07993 * 120.00046 * 119.80115 * 21 19 18 23 23 C 1.37878 * 119.99805 * 299.79976 * 21 19 18 24 24 N 1.31513 * 120.00165 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99837 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47409 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47181 * 120.00329 * 25 23 21 28 28 H 1.48501 * 109.46945 * 240.00013 * 25 23 21 29 29 C 1.46843 * 111.00298 * 27.78315 * 15 14 13 30 30 H 1.09000 * 109.47193 * 291.97345 * 1 2 3 31 31 H 1.09004 * 109.46540 * 171.97587 * 1 2 3 32 32 H 1.08998 * 109.47014 * 51.97321 * 1 2 3 33 33 H 1.08996 * 109.47494 * 119.99840 * 2 1 3 34 34 H 1.08999 * 109.47169 * 239.99996 * 2 1 3 35 35 H 1.08997 * 109.46826 * 215.38826 * 5 4 3 36 36 H 1.09007 * 109.46724 * 335.38433 * 5 4 3 37 37 H 1.08995 * 110.24178 * 316.01896 * 7 6 5 38 38 H 1.08996 * 110.24180 * 77.93031 * 7 6 5 39 39 H 1.09001 * 110.96512 * 92.70782 * 8 7 6 40 40 H 1.09001 * 110.96564 * 216.46604 * 8 7 6 41 41 H 1.08990 * 110.48708 * 143.47666 * 9 8 7 42 42 H 1.09005 * 110.48390 * 266.12409 * 9 8 7 43 43 H 1.08998 * 109.46216 * 305.85506 * 16 15 14 44 44 H 1.08997 * 109.46306 * 65.82707 * 16 15 14 45 45 H 1.09001 * 109.50207 * 180.88504 * 17 16 15 46 46 H 1.08996 * 109.54149 * 60.78342 * 17 16 15 47 47 H 1.09001 * 109.52258 * 297.75320 * 18 17 16 48 48 H 1.08996 * 109.57378 * 177.59359 * 18 17 16 49 49 H 0.96996 * 120.00420 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.45953 * 294.17755 * 29 15 14 51 51 H 1.08995 * 109.46460 * 54.15316 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1486 2.2108 1.0792 5 6 1.8132 1.8750 2.5095 6 7 3.0243 1.4307 3.2038 7 6 4.0150 2.3340 3.8011 8 6 5.2810 1.4746 4.0135 9 6 4.6824 0.0533 4.1246 10 6 3.3681 0.1433 3.3806 11 8 2.7204 -0.8076 2.9971 12 7 2.6193 3.3444 0.6421 13 7 2.7851 3.2910 -0.6313 14 6 2.4319 2.1088 -1.0778 15 7 2.4718 1.6800 -2.3949 16 6 1.1598 1.8302 -3.0372 17 6 1.2026 1.2151 -4.4378 18 6 2.2810 1.9189 -5.2664 19 6 3.6287 1.7890 -4.5514 20 1 3.9014 0.7363 -4.4773 21 6 4.6850 2.5297 -5.3304 22 1 5.2223 3.3458 -4.8705 23 6 4.9654 2.1652 -6.6302 24 7 4.3108 1.1716 -7.1904 25 14 6.2752 3.0827 -7.5955 26 1 6.8607 4.1499 -6.7448 27 1 7.3429 2.1354 -8.0052 28 1 5.6637 3.6920 -8.8039 29 6 3.5156 2.3875 -3.1474 30 1 -0.3633 0.3845 0.9530 31 1 -0.3632 -1.0177 -0.1435 32 1 -0.3633 0.6331 -0.8095 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.4133 2.7590 3.0061 36 1 1.0693 1.0785 2.5308 37 1 4.2291 3.1601 3.1232 38 1 3.6512 2.7144 4.7556 39 1 5.9515 1.5497 3.1574 40 1 5.7930 1.7553 4.9340 41 1 5.3413 -0.6761 3.6537 42 1 4.5081 -0.2067 5.1687 43 1 0.4028 1.3217 -2.4402 44 1 0.9116 2.8889 -3.1130 45 1 0.2333 1.3407 -4.9203 46 1 1.4368 0.1532 -4.3627 47 1 2.0265 2.9732 -5.3752 48 1 2.3450 1.4561 -6.2511 49 1 4.5078 0.9154 -8.1049 50 1 3.2564 3.4436 -3.2226 51 1 4.4695 2.2837 -2.6306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772231871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:37 Heat of formation + Delta-G solvation = 49.293149 kcal Electronic energy + Delta-G solvation = -32027.931656 eV Core-core repulsion = 27963.515138 eV Total energy + Delta-G solvation = -4064.416518 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.83155 -40.57815 -38.34872 -36.70785 -35.67272 -34.18283 -33.35559 -31.88904 -30.53820 -30.01852 -29.46573 -27.86578 -26.54907 -25.04950 -24.17033 -23.67901 -22.25761 -21.74334 -21.19142 -20.42127 -19.68125 -18.62984 -17.42265 -17.19463 -16.86310 -16.32324 -16.02450 -15.62874 -15.34732 -15.03492 -14.55718 -14.26380 -14.09930 -13.99667 -13.90173 -13.59465 -13.20542 -13.17596 -12.90806 -12.79701 -12.69768 -12.58288 -12.50368 -12.27067 -11.84844 -11.78409 -11.51271 -11.35597 -11.27113 -10.97213 -10.81559 -10.70017 -10.34459 -10.20293 -10.15418 -10.00763 -9.92205 -9.58612 -9.29205 -9.23378 -9.14033 -8.73905 -8.34903 -7.98253 -6.00786 -4.06354 1.71754 2.21190 2.45790 2.68485 3.16863 3.30365 3.38516 3.43601 3.98727 4.07246 4.14618 4.24934 4.45890 4.50143 4.55768 4.64439 4.78050 4.86971 5.02336 5.10492 5.18218 5.24074 5.27831 5.30071 5.40960 5.45277 5.46511 5.50158 5.56753 5.63324 5.66733 5.77629 5.85270 5.95450 6.05055 6.10121 6.24641 6.37044 6.38407 6.52691 6.64945 6.74330 6.77395 6.87656 7.03942 7.27482 7.37979 7.69952 7.73714 7.81638 7.99014 8.09674 8.41659 8.94454 8.97444 9.58312 11.05665 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002863 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.664582 B = 9778.961734 C =10679.920642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.461 5.461 4 C 0.132 3.868 5 C 0.220 3.780 6 N -0.613 5.613 7 C 0.100 3.900 8 C -0.132 4.132 9 C -0.154 4.154 10 C 0.518 3.482 11 O -0.532 6.532 12 N -0.273 5.273 13 N -0.320 5.320 14 C 0.376 3.624 15 N -0.463 5.463 16 C 0.070 3.930 17 C -0.116 4.116 18 C -0.114 4.114 19 C 0.056 3.944 20 H 0.035 0.965 21 C -0.513 4.513 22 H 0.057 0.943 23 C 0.064 3.936 24 N -0.889 5.889 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.084 3.916 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.035 0.965 48 H 0.095 0.905 49 H 0.259 0.741 50 H 0.044 0.956 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 -2.323 23.076 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.156 5.156 4 C -0.136 4.136 5 C 0.096 3.904 6 N -0.347 5.347 7 C -0.023 4.023 8 C -0.170 4.170 9 C -0.194 4.194 10 C 0.306 3.694 11 O -0.408 6.408 12 N -0.115 5.115 13 N -0.165 5.165 14 C 0.020 3.980 15 N -0.188 5.188 16 C -0.057 4.057 17 C -0.154 4.154 18 C -0.152 4.152 19 C 0.037 3.963 20 H 0.053 0.947 21 C -0.551 4.551 22 H 0.075 0.925 23 C -0.138 4.138 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.210 1.210 29 C -0.041 4.041 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.054 0.946 48 H 0.114 0.886 49 H 0.069 0.931 50 H 0.063 0.937 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.841 -2.009 22.653 23.480 hybrid contribution 0.102 -0.085 -0.704 0.717 sum -5.739 -2.093 21.948 22.783 Atomic orbital electron populations 1.22166 0.94108 1.03476 1.02530 1.22037 0.95504 0.78951 1.06205 1.46349 1.49227 1.13469 1.06512 1.24898 1.07358 0.89372 0.91971 1.19451 0.86164 1.02057 0.82762 1.48317 1.23783 1.07354 1.55262 1.22182 0.87676 0.93623 0.98800 1.22609 0.96990 0.93468 1.03954 1.22324 0.95276 0.99382 1.02406 1.21066 0.87292 0.82334 0.78704 1.90687 1.58012 1.39827 1.52312 1.73903 1.14907 1.18616 1.04118 1.74722 1.23580 1.15092 1.03061 1.22911 0.98526 0.87034 0.89518 1.58900 1.08342 1.56219 0.95336 1.22208 0.87344 0.99677 0.96473 1.21712 0.99948 1.00733 0.92987 1.21711 0.93920 0.98094 1.01437 1.18730 0.93347 0.97029 0.87229 0.94695 1.21127 1.19493 1.16900 0.97616 0.92466 1.24916 0.96248 0.95014 0.97587 1.69887 1.41156 1.27860 1.13886 0.86535 0.81687 0.79850 0.79948 1.19714 1.21053 1.21044 1.22386 0.90387 0.95683 0.95672 0.92242 0.90161 0.91837 0.87688 0.87803 0.87043 0.88073 0.89326 0.90581 0.89837 0.88928 0.87902 0.87703 0.92217 0.94100 0.92612 0.91786 0.94600 0.88630 0.93060 0.93733 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.10 1.22 6.48 -4.04 -0.03 1.19 16 3 N -0.46 -7.10 2.81 -114.08 -0.32 -7.42 16 4 C 0.13 1.91 7.65 -154.01 -1.18 0.73 16 5 C 0.22 2.23 6.40 -5.19 -0.03 2.20 16 6 N -0.61 -5.91 2.92 -173.78 -0.51 -6.42 16 7 C 0.10 0.71 7.35 -3.12 -0.02 0.69 16 8 C -0.13 -0.78 7.18 -25.10 -0.18 -0.96 16 9 C -0.15 -1.08 6.86 -26.74 -0.18 -1.26 16 10 C 0.52 5.56 8.02 -10.86 -0.09 5.47 16 11 O -0.53 -7.38 15.70 5.56 0.09 -7.30 16 12 N -0.27 -4.79 12.18 32.99 0.40 -4.39 16 13 N -0.32 -6.42 11.55 30.31 0.35 -6.07 16 14 C 0.38 7.01 6.80 -318.87 -2.17 4.84 16 15 N -0.46 -8.97 4.60 -174.55 -0.80 -9.77 16 16 C 0.07 1.22 5.40 -3.83 -0.02 1.20 16 17 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 18 C -0.11 -2.60 5.03 -26.60 -0.13 -2.74 16 19 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 20 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.51 -14.03 8.56 -34.44 -0.29 -14.33 16 22 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 23 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -24.95 11.36 55.43 0.63 -24.32 16 25 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.08 1.88 4.21 -3.84 -0.02 1.87 16 30 H 0.06 0.54 7.54 -51.93 -0.39 0.15 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 33 H 0.10 1.36 6.25 -51.93 -0.32 1.04 16 34 H 0.10 1.42 8.06 -51.93 -0.42 1.00 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 0.96 6.89 -51.93 -0.36 0.60 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.91 6.33 -51.93 -0.33 0.58 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 49 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.04 1.04 8.06 -51.93 -0.42 0.62 16 51 H 0.06 1.50 8.10 -51.93 -0.42 1.08 16 LS Contribution 401.46 15.07 6.05 6.05 Total: -1.00 -32.76 401.46 -11.91 -44.67 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.35 Total: 0.56 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -4.43 Total: -1.86 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.25 Total: -58.38 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.30 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.76 -11.91 -44.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772231871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.965 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds