Wall clock time and date at job start Wed Apr 1 2020 04:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46950 * 2 1 4 4 C 1.36741 * 127.13900 * 81.89801 * 3 2 1 5 5 C 1.50706 * 126.34510 * 359.96695 * 4 3 2 6 6 N 1.46494 * 109.47293 * 95.38308 * 5 4 3 7 7 C 1.46772 * 124.34911 * 83.42008 * 6 5 4 8 8 C 1.54479 * 105.47221 * 197.01660 * 7 6 5 9 9 C 1.54625 * 101.76878 * 334.58644 * 8 7 6 10 10 C 1.34420 * 124.35172 * 263.12328 * 6 5 4 11 11 O 1.21280 * 124.94045 * 359.56752 * 10 6 5 12 12 N 1.30292 * 107.30751 * 179.83000 * 4 3 2 13 13 N 1.28526 * 110.05100 * 0.44970 * 12 4 3 14 14 C 1.31217 * 109.86394 * 359.70927 * 13 12 4 15 15 N 1.38580 * 126.47345 * 180.02562 * 14 13 12 16 16 C 1.46852 * 110.99695 * 263.57033 * 15 14 13 17 17 C 1.53036 * 109.51971 * 185.84289 * 16 15 14 18 18 C 1.53129 * 109.27802 * 300.81907 * 17 16 15 19 19 C 1.53116 * 109.15783 * 57.65879 * 18 17 16 20 20 H 1.09002 * 109.50492 * 62.28409 * 19 18 17 21 21 C 1.50701 * 109.50229 * 182.40546 * 19 18 17 22 22 H 1.07993 * 120.00046 * 119.80115 * 21 19 18 23 23 C 1.37878 * 119.99805 * 299.79976 * 21 19 18 24 24 N 1.31513 * 120.00165 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99837 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47409 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47181 * 120.00329 * 25 23 21 28 28 H 1.48501 * 109.46945 * 240.00013 * 25 23 21 29 29 C 1.46843 * 111.00298 * 27.78315 * 15 14 13 30 30 H 1.09000 * 109.47193 * 291.97345 * 1 2 3 31 31 H 1.09004 * 109.46540 * 171.97587 * 1 2 3 32 32 H 1.08998 * 109.47014 * 51.97321 * 1 2 3 33 33 H 1.08996 * 109.47494 * 119.99840 * 2 1 3 34 34 H 1.08999 * 109.47169 * 239.99996 * 2 1 3 35 35 H 1.08997 * 109.46826 * 215.38826 * 5 4 3 36 36 H 1.09007 * 109.46724 * 335.38433 * 5 4 3 37 37 H 1.08995 * 110.24178 * 316.01896 * 7 6 5 38 38 H 1.08996 * 110.24180 * 77.93031 * 7 6 5 39 39 H 1.09001 * 110.96512 * 92.70782 * 8 7 6 40 40 H 1.09001 * 110.96564 * 216.46604 * 8 7 6 41 41 H 1.08990 * 110.48708 * 143.47666 * 9 8 7 42 42 H 1.09005 * 110.48390 * 266.12409 * 9 8 7 43 43 H 1.08998 * 109.46216 * 305.85506 * 16 15 14 44 44 H 1.08997 * 109.46306 * 65.82707 * 16 15 14 45 45 H 1.09001 * 109.50207 * 180.88504 * 17 16 15 46 46 H 1.08996 * 109.54149 * 60.78342 * 17 16 15 47 47 H 1.09001 * 109.52258 * 297.75320 * 18 17 16 48 48 H 1.08996 * 109.57378 * 177.59359 * 18 17 16 49 49 H 0.96996 * 120.00420 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.45953 * 294.17755 * 29 15 14 51 51 H 1.08995 * 109.46460 * 54.15316 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1486 2.2108 1.0792 5 6 1.8132 1.8750 2.5095 6 7 3.0243 1.4307 3.2038 7 6 4.0150 2.3340 3.8011 8 6 5.2810 1.4746 4.0135 9 6 4.6824 0.0533 4.1246 10 6 3.3681 0.1433 3.3806 11 8 2.7204 -0.8076 2.9971 12 7 2.6193 3.3444 0.6421 13 7 2.7851 3.2910 -0.6313 14 6 2.4319 2.1088 -1.0778 15 7 2.4718 1.6800 -2.3949 16 6 1.1598 1.8302 -3.0372 17 6 1.2026 1.2151 -4.4378 18 6 2.2810 1.9189 -5.2664 19 6 3.6287 1.7890 -4.5514 20 1 3.9014 0.7363 -4.4773 21 6 4.6850 2.5297 -5.3304 22 1 5.2223 3.3458 -4.8705 23 6 4.9654 2.1652 -6.6302 24 7 4.3108 1.1716 -7.1904 25 14 6.2752 3.0827 -7.5955 26 1 6.8607 4.1499 -6.7448 27 1 7.3429 2.1354 -8.0052 28 1 5.6637 3.6920 -8.8039 29 6 3.5156 2.3875 -3.1474 30 1 -0.3633 0.3845 0.9530 31 1 -0.3632 -1.0177 -0.1435 32 1 -0.3633 0.6331 -0.8095 33 1 1.8934 -0.5138 0.8899 34 1 1.8934 -0.5138 -0.8900 35 1 1.4133 2.7590 3.0061 36 1 1.0693 1.0785 2.5308 37 1 4.2291 3.1601 3.1232 38 1 3.6512 2.7144 4.7556 39 1 5.9515 1.5497 3.1574 40 1 5.7930 1.7553 4.9340 41 1 5.3413 -0.6761 3.6537 42 1 4.5081 -0.2067 5.1687 43 1 0.4028 1.3217 -2.4402 44 1 0.9116 2.8889 -3.1130 45 1 0.2333 1.3407 -4.9203 46 1 1.4368 0.1532 -4.3627 47 1 2.0265 2.9732 -5.3752 48 1 2.3450 1.4561 -6.2511 49 1 4.5078 0.9154 -8.1049 50 1 3.2564 3.4436 -3.2226 51 1 4.4695 2.2837 -2.6306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772231871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:36 Heat of formation + Delta-G solvation = 31.614888 kcal Electronic energy + Delta-G solvation = -32028.698243 eV Core-core repulsion = 27963.515138 eV Total energy + Delta-G solvation = -4065.183104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.13994 -41.33678 -39.99177 -37.52223 -36.84231 -35.83468 -34.46649 -33.50322 -31.87292 -31.58291 -30.65064 -28.48287 -27.60601 -27.04865 -25.55465 -24.94861 -23.44137 -22.82372 -22.51451 -21.70805 -20.62244 -20.29744 -18.88721 -18.13414 -18.00257 -17.55634 -17.38307 -16.81102 -16.59096 -16.32905 -16.07573 -15.60470 -15.41981 -14.89905 -14.80478 -14.72044 -14.62443 -14.48280 -14.24028 -14.09361 -13.81158 -13.59504 -13.55909 -13.37716 -13.12189 -12.89736 -12.75828 -12.62811 -12.54247 -12.42165 -12.32120 -11.95363 -11.90958 -11.86015 -11.67334 -11.42437 -11.24263 -11.10720 -10.99802 -10.84305 -10.52088 -10.41918 -9.96046 -9.50730 -8.12075 -6.25341 0.52429 1.11886 1.39359 1.41494 1.46621 1.53340 1.58059 2.16576 2.40613 2.68167 3.15647 3.20897 3.36199 3.53057 3.62900 3.76596 3.80901 3.95010 4.01921 4.05166 4.11085 4.18117 4.25247 4.30677 4.36454 4.40548 4.49146 4.55097 4.61859 4.68117 4.71072 4.73449 4.75559 4.83438 4.89072 4.93105 5.01866 5.04589 5.05247 5.11266 5.18885 5.24562 5.36354 5.39626 5.56615 5.60890 5.68723 5.95356 6.01082 6.09002 6.22355 6.34910 6.83299 7.02319 7.42278 7.60773 8.93175 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002863 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.664582 B = 9778.961734 C =10679.920642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.095 3.905 3 N -0.458 5.458 4 C 0.156 3.844 5 C 0.218 3.782 6 N -0.614 5.614 7 C 0.096 3.904 8 C -0.125 4.125 9 C -0.148 4.148 10 C 0.505 3.495 11 O -0.569 6.569 12 N -0.300 5.300 13 N -0.356 5.356 14 C 0.358 3.642 15 N -0.462 5.462 16 C 0.074 3.926 17 C -0.105 4.105 18 C -0.106 4.106 19 C 0.058 3.942 20 H 0.005 0.995 21 C -0.539 4.539 22 H 0.046 0.954 23 C 0.021 3.979 24 N -0.910 5.910 25 Si 0.953 3.047 26 H -0.272 1.272 27 H -0.278 1.278 28 H -0.277 1.277 29 C 0.106 3.894 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.132 0.868 43 H 0.092 0.908 44 H 0.033 0.967 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.069 0.931 49 H 0.263 0.737 50 H 0.029 0.971 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -2.533 25.399 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.151 5.151 4 C -0.114 4.114 5 C 0.093 3.907 6 N -0.347 5.347 7 C -0.026 4.026 8 C -0.162 4.162 9 C -0.187 4.187 10 C 0.295 3.705 11 O -0.449 6.449 12 N -0.141 5.141 13 N -0.201 5.201 14 C 0.000 4.000 15 N -0.187 5.187 16 C -0.052 4.052 17 C -0.143 4.143 18 C -0.145 4.145 19 C 0.039 3.961 20 H 0.023 0.977 21 C -0.577 4.577 22 H 0.065 0.935 23 C -0.179 4.179 24 N -0.549 5.549 25 Si 0.779 3.221 26 H -0.197 1.197 27 H -0.204 1.204 28 H -0.202 1.202 29 C -0.020 4.020 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.084 0.916 40 H 0.144 0.856 41 H 0.118 0.882 42 H 0.150 0.850 43 H 0.110 0.890 44 H 0.051 0.949 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.072 0.928 50 H 0.048 0.952 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.748 -2.208 25.001 25.990 hybrid contribution 0.396 -0.047 -1.326 1.384 sum -6.352 -2.255 23.675 24.616 Atomic orbital electron populations 1.22143 0.91539 1.04783 1.03018 1.22202 0.97517 0.77319 1.05630 1.46551 1.48615 1.14219 1.05758 1.25791 1.04255 0.88062 0.93272 1.19771 0.86824 1.03750 0.80361 1.48459 1.23943 1.07687 1.54644 1.22396 0.87789 0.92802 0.99573 1.22632 0.96267 0.92443 1.04888 1.22370 0.93079 1.00002 1.03298 1.21767 0.88163 0.82083 0.78482 1.90658 1.59319 1.40949 1.53958 1.73836 1.16786 1.20271 1.03168 1.74621 1.24528 1.16366 1.04550 1.22748 1.00133 0.87545 0.89563 1.58807 1.08442 1.55603 0.95851 1.22244 0.87193 0.99553 0.96253 1.21600 0.99690 0.99985 0.92985 1.21508 0.94505 0.97754 1.00683 1.18602 0.93961 0.94849 0.88645 0.97722 1.21420 1.20612 1.17175 0.98506 0.93525 1.25627 0.98134 0.95777 0.98344 1.69998 1.42051 1.28671 1.14203 0.85576 0.79259 0.78693 0.78558 1.19666 1.20411 1.20230 1.21894 0.90759 0.94758 0.94621 0.90860 0.88043 0.92537 0.87670 0.88934 0.84193 0.87024 0.91155 0.87334 0.91563 0.85632 0.88151 0.85048 0.88999 0.94850 0.89562 0.91827 0.95529 0.91263 0.92815 0.95249 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.24 71.98 0.74 -2.04 16 2 C 0.09 2.31 6.48 86.38 0.56 2.87 16 3 N -0.46 -13.83 2.81 -514.85 -1.45 -15.28 16 4 C 0.16 4.35 7.65 137.64 1.05 5.40 16 5 C 0.22 3.94 6.40 85.64 0.55 4.49 16 6 N -0.61 -10.61 2.92 -822.30 -2.40 -13.01 16 7 C 0.10 1.14 7.35 86.83 0.64 1.77 16 8 C -0.12 -1.16 7.18 31.65 0.23 -0.93 16 9 C -0.15 -1.73 6.86 30.59 0.21 -1.52 16 10 C 0.51 10.02 8.02 87.90 0.71 10.72 16 11 O -0.57 -15.21 15.70 -3.03 -0.05 -15.26 16 12 N -0.30 -10.49 12.18 -49.53 -0.60 -11.09 16 13 N -0.36 -14.61 11.55 -58.00 -0.67 -15.29 16 14 C 0.36 13.49 6.80 260.11 1.77 15.26 16 15 N -0.46 -18.28 4.60 -706.16 -3.25 -21.53 16 16 C 0.07 2.55 5.40 86.32 0.47 3.01 16 17 C -0.10 -3.82 6.09 30.65 0.19 -3.63 16 18 C -0.11 -5.01 5.03 30.68 0.15 -4.86 16 19 C 0.06 3.03 2.26 -11.49 -0.03 3.01 16 20 H 0.00 0.26 8.14 -2.39 -0.02 0.25 16 21 C -0.54 -30.68 8.56 25.60 0.22 -30.46 16 22 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 23 C 0.02 1.15 5.30 84.66 0.45 1.60 16 24 N -0.91 -52.21 11.36 21.45 0.24 -51.96 16 25 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 29 C 0.11 5.00 4.21 86.33 0.36 5.36 16 30 H 0.07 1.10 7.54 -2.39 -0.02 1.09 16 31 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.06 1.10 6.37 -2.39 -0.02 1.08 16 33 H 0.11 2.62 6.25 -2.39 -0.01 2.61 16 34 H 0.09 2.48 8.06 -2.39 -0.02 2.46 16 35 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.83 6.89 -2.38 -0.02 1.81 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.09 2.61 6.33 -2.39 -0.02 2.59 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 3.64 6.16 -2.39 -0.01 3.63 16 49 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.03 1.44 8.06 -2.39 -0.02 1.43 16 51 H 0.04 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -74.79 401.46 3.04 -71.75 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.92 Total: 15.22 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 8.26 Total: 10.06 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -8.12 Total: -128.15 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.05 Total: -15.26 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -74.79 3.04 -71.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772231871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.364 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds