Wall clock time and date at job start Wed Apr 1 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99420 * 2 1 4 4 H 1.48500 * 109.47593 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47331 * 30.00188 * 3 2 1 6 6 H 1.48505 * 109.47071 * 149.99760 * 3 2 1 7 7 C 1.37871 * 120.00537 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00291 * 182.93836 * 7 2 1 9 9 C 1.50700 * 120.00066 * 2.94213 * 7 2 1 10 10 C 1.53002 * 115.54605 * 324.69063 * 9 7 2 11 11 N 1.46496 * 109.47329 * 305.45180 * 10 9 7 12 12 C 1.34781 * 119.99881 * 184.86198 * 11 10 9 13 13 O 1.21584 * 119.99913 * 4.67800 * 12 11 10 14 14 N 1.34775 * 119.99748 * 184.67377 * 12 11 10 15 15 C 1.46917 * 120.63504 * 355.10259 * 14 12 11 16 16 C 1.53189 * 108.78228 * 126.44902 * 15 14 12 17 17 C 1.53082 * 109.30729 * 54.65029 * 16 15 14 18 18 H 1.08992 * 109.46782 * 58.54593 * 17 16 15 19 19 C 1.53083 * 109.46665 * 298.54729 * 17 16 15 20 20 H 1.09003 * 109.87299 * 301.25438 * 19 17 16 21 21 C 1.53113 * 109.30079 * 180.99562 * 19 17 16 22 22 C 1.53109 * 109.19590 * 57.60067 * 21 19 17 23 23 C 1.53048 * 109.24511 * 302.31320 * 22 21 19 24 24 N 1.46829 * 109.50951 * 59.23195 * 23 22 21 25 25 C 1.46897 * 111.00143 * 174.10209 * 24 23 22 26 26 C 1.53003 * 117.49984 * 357.29502 * 25 24 23 27 27 C 1.52995 * 117.49940 * 65.95832 * 25 24 23 28 28 C 1.46922 * 120.63074 * 175.12589 * 14 12 11 29 29 C 1.52999 * 117.50198 * 110.36493 * 9 7 2 30 30 C 1.53000 * 117.49952 * 179.02393 * 9 7 2 31 31 H 0.97001 * 120.00863 * 5.00389 * 1 2 3 32 32 H 1.08997 * 109.47125 * 185.45118 * 10 9 7 33 33 H 1.08997 * 109.47202 * 65.45457 * 10 9 7 34 34 H 0.97001 * 120.00432 * 4.86633 * 11 10 9 35 35 H 1.09004 * 109.58970 * 6.65998 * 15 14 12 36 36 H 1.08996 * 109.58948 * 246.23547 * 15 14 12 37 37 H 1.09002 * 109.49690 * 294.70658 * 16 15 14 38 38 H 1.08994 * 109.50186 * 174.60176 * 16 15 14 39 39 H 1.09002 * 109.51560 * 297.68000 * 21 19 17 40 40 H 1.08998 * 109.56188 * 177.54318 * 21 19 17 41 41 H 1.08995 * 109.50974 * 182.38322 * 22 21 19 42 42 H 1.08999 * 109.54459 * 62.26039 * 22 21 19 43 43 H 1.09001 * 109.46387 * 299.21744 * 23 22 21 44 44 H 1.09006 * 109.45941 * 179.24437 * 23 22 21 45 45 H 1.09004 * 115.55056 * 211.62620 * 25 24 23 46 46 H 1.08998 * 117.49836 * 215.00188 * 26 25 24 47 47 H 1.09001 * 117.49658 * 0.02887 * 26 25 24 48 48 H 1.08994 * 117.50116 * 359.97438 * 27 25 24 49 49 H 1.09006 * 117.49732 * 144.97968 * 27 25 24 50 50 H 1.08996 * 109.59016 * 113.82231 * 28 14 12 51 51 H 1.09004 * 109.58822 * 353.39094 * 28 14 12 52 52 H 1.08996 * 117.49552 * 215.00471 * 29 9 7 53 53 H 1.08999 * 117.49546 * 0.02562 * 29 9 7 54 54 H 1.08997 * 117.49816 * 359.97438 * 30 9 7 55 55 H 1.09005 * 117.49336 * 144.96796 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0835 -1.1945 0.0474 9 6 1.2527 -2.4982 -0.0681 10 6 -0.0869 -2.5266 0.6705 11 7 0.1152 -2.1235 2.0643 12 6 -0.9129 -2.1686 2.9347 13 8 -1.9852 -2.6233 2.5859 14 7 -0.7522 -1.7096 4.1917 15 6 0.5644 -1.2567 4.6607 16 6 0.4261 0.1606 5.2253 17 6 -0.6627 0.1728 6.3013 18 1 -0.4020 -0.5330 7.0898 19 6 -2.0011 -0.2305 5.6774 20 1 -2.2574 0.4586 4.8725 21 6 -3.0919 -0.1929 6.7512 22 6 -3.1521 1.2112 7.3587 23 6 -1.7808 1.5706 7.9355 24 7 -0.7725 1.5226 6.8692 25 6 0.5302 1.9970 7.3548 26 6 0.6057 2.5005 8.7976 27 6 1.2352 1.1568 8.4214 28 6 -1.8902 -1.6531 5.1192 29 6 1.3655 -3.3127 -1.3583 30 6 2.0757 -3.7879 -0.0883 31 1 -0.4851 0.8368 -0.0733 32 1 -0.4973 -3.5359 0.6400 33 1 -0.7814 -1.8374 0.1900 34 1 0.9890 -1.8242 2.3609 35 1 1.2671 -1.2511 3.8275 36 1 0.9249 -1.9271 5.4409 37 1 0.1528 0.8466 4.4234 38 1 1.3743 0.4718 5.6636 39 1 -2.8597 -0.9177 7.5316 40 1 -4.0546 -0.4371 6.3023 41 1 -3.8980 1.2324 8.1532 42 1 -3.4222 1.9314 6.5864 43 1 -1.5173 0.8579 8.7170 44 1 -1.8161 2.5752 8.3571 45 1 1.1545 2.4968 6.6140 46 1 1.2796 3.3315 9.0060 47 1 -0.3111 2.4793 9.3867 48 1 0.7323 0.2523 8.7632 49 1 2.3233 1.1036 8.3822 50 1 -1.7301 -2.3552 5.9374 51 1 -2.8071 -1.9100 4.5886 52 1 0.4853 -3.8687 -1.6810 53 1 1.9839 -2.9054 -2.1582 54 1 3.1610 -3.6929 -0.0532 55 1 1.6629 -4.6564 0.4249 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374045211.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:05:10 Heat of formation + Delta-G solvation = 22.089647 kcal Electronic energy + Delta-G solvation = -32983.235768 eV Core-core repulsion = 29021.179962 eV Total energy + Delta-G solvation = -3962.055806 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.74052 -40.57256 -38.68914 -37.90732 -36.35244 -34.78721 -34.10561 -33.58883 -32.33067 -30.76664 -28.04031 -27.38642 -25.95753 -25.30493 -24.39633 -23.34566 -22.95002 -22.13006 -21.48737 -21.12162 -20.28079 -20.26244 -19.13158 -17.97657 -17.48660 -17.12955 -16.76269 -16.39843 -16.23932 -15.96813 -15.75939 -15.59699 -15.10768 -14.98595 -14.85036 -14.57281 -14.37137 -14.12361 -13.93324 -13.71963 -13.52144 -13.24989 -13.10793 -12.93496 -12.84704 -12.60060 -12.54873 -12.43311 -12.32877 -12.28485 -12.02892 -11.84651 -11.75614 -11.59795 -11.49886 -11.38123 -11.06978 -11.01246 -10.90219 -10.83420 -10.66522 -10.14875 -9.86783 -9.24132 -9.16212 -7.91818 -6.18296 1.41933 1.46381 1.53744 1.84834 2.37837 2.42917 2.71665 2.97751 3.00450 3.29686 3.59080 3.65948 3.74144 3.81137 3.92327 4.01873 4.03866 4.12402 4.16185 4.22378 4.28278 4.29438 4.37690 4.42384 4.55765 4.62400 4.64543 4.71658 4.74357 4.77662 4.78386 4.80682 4.84249 4.86745 4.91164 4.97219 5.01073 5.04286 5.13369 5.14043 5.19096 5.21309 5.26229 5.29123 5.33215 5.47735 5.54422 5.61911 5.68886 5.97382 6.00820 6.15625 6.16803 6.20304 6.40145 6.83441 7.29627 7.46947 7.82500 8.93593 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.003531 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.512172 B = 7928.079874 C = 9055.333397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.039 3.961 3 Si 0.944 3.056 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.009 3.991 10 C 0.196 3.804 11 N -0.697 5.697 12 C 0.697 3.303 13 O -0.651 6.651 14 N -0.631 5.631 15 C 0.114 3.886 16 C -0.118 4.118 17 C 0.111 3.889 18 H 0.055 0.945 19 C -0.088 4.088 20 H 0.048 0.952 21 C -0.110 4.110 22 C -0.114 4.114 23 C 0.055 3.945 24 N -0.520 5.520 25 C 0.009 3.991 26 C -0.177 4.177 27 C -0.204 4.204 28 C 0.139 3.861 29 C -0.198 4.198 30 C -0.187 4.187 31 H 0.255 0.745 32 H 0.010 0.990 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.115 0.885 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.104 0.896 50 H 0.082 0.918 51 H 0.068 0.932 52 H 0.074 0.926 53 H 0.079 0.921 54 H 0.086 0.914 55 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 3.093 21.158 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.208 1.208 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.009 3.991 10 C 0.071 3.929 11 N -0.350 5.350 12 C 0.399 3.601 13 O -0.535 6.535 14 N -0.368 5.368 15 C -0.009 4.009 16 C -0.157 4.157 17 C 0.003 3.997 18 H 0.073 0.927 19 C -0.108 4.108 20 H 0.067 0.933 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.073 4.073 24 N -0.243 5.243 25 C -0.100 4.100 26 C -0.214 4.214 27 C -0.243 4.243 28 C 0.016 3.984 29 C -0.237 4.237 30 C -0.224 4.224 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.091 0.909 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.104 0.896 45 H 0.132 0.868 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.109 0.891 49 H 0.122 0.878 50 H 0.100 0.900 51 H 0.086 0.914 52 H 0.092 0.908 53 H 0.098 0.902 54 H 0.104 0.896 55 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.631 3.227 20.559 20.821 hybrid contribution 0.886 0.554 -0.164 1.058 sum 0.255 3.781 20.396 20.745 Atomic orbital electron populations 1.70082 1.06807 1.26571 1.48993 1.25546 0.95243 1.01444 0.94036 0.85763 0.79029 0.80155 0.77965 1.20830 1.21907 1.18565 1.20683 0.92465 0.89420 1.51445 0.92221 1.19269 0.93391 0.90617 0.95865 1.20576 0.97348 0.95013 0.79929 1.44850 1.11506 1.69074 1.09582 1.16093 0.83883 0.79000 0.81152 1.90764 1.28199 1.55612 1.78903 1.47231 1.11148 1.67725 1.10707 1.21728 0.83689 0.95652 0.99817 1.21887 0.99858 0.95916 0.98047 1.21392 0.94025 0.88976 0.95284 0.92685 1.21521 0.95839 0.95508 0.97946 0.93306 1.21562 0.97845 0.98094 0.97309 1.21583 0.96651 0.96128 1.00771 1.22248 0.91349 1.01565 0.92092 1.61828 1.05745 1.23886 1.32873 1.22779 0.92033 1.03663 0.91516 1.23422 1.03644 0.98077 0.96278 1.23381 1.01010 0.95142 1.04796 1.21496 0.88798 0.96517 0.91590 1.22958 1.02021 1.06203 0.92514 1.22932 0.98450 0.98962 1.02046 0.93553 0.97134 0.90940 0.76384 0.90846 0.89037 0.93827 0.88887 0.90436 0.91436 0.89166 0.92609 0.93977 0.89605 0.86774 0.87437 0.87576 0.89109 0.87760 0.89981 0.91364 0.90787 0.90221 0.89588 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.67 10.17 21.44 0.22 -48.45 16 2 C 0.04 2.00 5.31 84.65 0.45 2.45 16 3 Si 0.94 41.27 29.54 68.60 2.03 43.30 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.50 -25.29 8.31 25.60 0.21 -25.08 16 8 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 9 C 0.01 0.44 2.06 -52.93 -0.11 0.33 16 10 C 0.20 9.81 4.62 86.38 0.40 10.21 16 11 N -0.70 -31.79 5.07 -478.55 -2.43 -34.22 16 12 C 0.70 31.52 8.30 179.05 1.49 33.01 16 13 O -0.65 -34.30 15.76 -3.98 -0.06 -34.36 16 14 N -0.63 -21.97 2.97 -836.89 -2.49 -24.46 16 15 C 0.11 3.19 6.43 86.36 0.56 3.75 16 16 C -0.12 -3.06 5.18 30.68 0.16 -2.90 16 17 C 0.11 2.49 1.39 44.98 0.06 2.56 16 18 H 0.06 1.11 7.24 -2.39 -0.02 1.10 16 19 C -0.09 -2.26 2.33 -10.65 -0.02 -2.28 16 20 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 21 C -0.11 -2.11 5.27 30.67 0.16 -1.94 16 22 C -0.11 -1.93 6.10 30.65 0.19 -1.74 16 23 C 0.05 0.91 4.08 86.33 0.35 1.26 16 24 N -0.52 -10.93 4.71 -845.81 -3.99 -14.92 16 25 C 0.01 0.16 4.70 44.92 0.21 0.37 16 26 C -0.18 -2.38 9.42 30.62 0.29 -2.10 16 27 C -0.20 -2.94 9.44 30.62 0.29 -2.65 16 28 C 0.14 4.11 5.69 86.37 0.49 4.60 16 29 C -0.20 -8.62 9.96 30.62 0.30 -8.31 16 30 C -0.19 -7.58 9.93 30.62 0.30 -7.28 16 31 H 0.25 13.86 8.32 -92.71 -0.77 13.09 16 32 H 0.01 0.53 8.05 -2.39 -0.02 0.51 16 33 H 0.07 4.20 5.90 -2.39 -0.01 4.19 16 34 H 0.40 17.18 5.40 -92.71 -0.50 16.68 16 35 H 0.07 2.26 5.57 -2.39 -0.01 2.25 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 2.03 6.86 -2.39 -0.02 2.01 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 0.62 7.46 -2.39 -0.02 0.61 16 44 H 0.09 1.28 6.79 -2.38 -0.02 1.27 16 45 H 0.11 2.26 8.02 -2.38 -0.02 2.24 16 46 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.11 1.29 5.83 -2.39 -0.01 1.28 16 48 H 0.09 1.33 7.25 -2.39 -0.02 1.31 16 49 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 50 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.07 2.37 7.03 -2.39 -0.02 2.36 16 52 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 53 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 54 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 55 H 0.08 3.07 8.14 -2.38 -0.02 3.05 16 Total: -1.00 -63.57 409.59 -0.57 -64.14 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: 0.37 Total: 44.72 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 5.78 Total: 4.25 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -8.68 Total: -122.04 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.06 Total: -34.36 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -63.57 -0.57 -64.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374045211.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.225 kcal (2) G-P(sol) polarization free energy of solvation -63.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds