Wall clock time and date at job start Wed Apr 1 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48504 * 109.46702 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47066 * 299.99871 * 3 2 1 6 6 H 1.48504 * 109.47146 * 60.00048 * 3 2 1 7 7 C 1.38815 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99601 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00237 * 0.02562 * 7 2 1 10 10 C 1.47586 * 134.49611 * 180.02562 * 9 7 2 11 11 C 1.53937 * 86.12209 * 155.35762 * 10 9 7 12 12 N 1.46898 * 113.74559 * 137.95154 * 11 10 9 13 13 C 1.46899 * 111.00083 * 179.97438 * 12 11 10 14 14 C 1.53246 * 109.33774 * 187.25206 * 13 12 11 15 15 N 1.47080 * 108.52159 * 306.17599 * 14 13 12 16 16 C 1.34781 * 120.87590 * 231.18536 * 15 14 13 17 17 O 1.21278 * 120.00285 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99637 * 179.97438 * 16 15 14 19 19 H 1.08999 * 115.56290 * 291.22793 * 18 16 15 20 20 C 1.53073 * 117.51238 * 76.93273 * 18 16 15 21 21 C 1.52997 * 59.98662 * 107.47569 * 20 18 16 22 22 H 1.08996 * 117.49981 * 107.49696 * 21 20 18 23 23 C 1.52995 * 117.49945 * 252.50232 * 21 20 18 24 24 C 1.54896 * 110.48377 * 288.82149 * 23 21 20 25 25 C 1.54887 * 102.74844 * 203.37957 * 24 23 21 26 26 C 1.54266 * 104.19861 * 37.94340 * 25 24 23 27 27 C 1.53872 * 106.59690 * 336.38875 * 26 25 24 28 28 C 1.47070 * 118.24097 * 51.45586 * 15 14 13 29 29 C 1.46898 * 111.00023 * 304.30340 * 12 11 10 30 30 C 1.47584 * 134.49323 * 359.97438 * 9 7 2 31 31 H 0.97002 * 119.99767 * 0.02562 * 1 2 3 32 32 H 1.09000 * 113.76591 * 41.05213 * 10 9 7 33 33 H 1.09005 * 113.86906 * 269.67540 * 10 9 7 34 34 H 1.09001 * 113.74040 * 269.16046 * 11 10 9 35 35 H 1.09001 * 109.49231 * 67.29835 * 13 12 11 36 36 H 1.08993 * 109.51640 * 307.22760 * 13 12 11 37 37 H 1.08992 * 109.62763 * 186.46018 * 14 13 12 38 38 H 1.09004 * 109.78595 * 65.98069 * 14 13 12 39 39 H 1.08998 * 117.51354 * 359.97438 * 20 18 16 40 40 H 1.08997 * 117.51141 * 214.95396 * 20 18 16 41 41 H 1.08996 * 110.43831 * 51.50541 * 23 21 20 42 42 H 1.09004 * 110.75105 * 85.07025 * 24 23 21 43 43 H 1.08990 * 110.75786 * 321.69637 * 24 23 21 44 44 H 1.09007 * 110.48695 * 279.26710 * 25 24 23 45 45 H 1.08996 * 110.48983 * 156.62483 * 25 24 23 46 46 H 1.08998 * 110.03272 * 95.67196 * 26 25 24 47 47 H 1.08996 * 110.03586 * 217.05884 * 26 25 24 48 48 H 1.09004 * 110.03502 * 119.28317 * 27 26 25 49 49 H 1.08998 * 110.03614 * 240.71371 * 27 26 25 50 50 H 1.09000 * 109.63317 * 68.25062 * 28 15 14 51 51 H 1.09000 * 109.62924 * 188.83295 * 28 15 14 52 52 H 1.09000 * 109.49396 * 292.70921 * 29 12 11 53 53 H 1.09004 * 109.49026 * 52.78502 * 29 12 11 54 54 H 1.09001 * 113.76588 * 90.34249 * 30 9 7 55 55 H 1.08997 * 113.77365 * 318.94501 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7200 -3.8102 0.0015 11 6 0.3464 -4.0827 0.6409 12 7 -0.3355 -5.2645 0.0966 13 6 -1.6363 -5.4682 0.7478 14 6 -2.2316 -6.8027 0.2861 15 7 -2.2631 -6.8164 -1.1843 16 6 -3.3947 -7.1235 -1.8491 17 8 -4.4049 -7.3929 -1.2345 18 6 -3.4048 -7.1309 -3.3560 19 1 -3.3028 -6.1555 -3.8318 20 6 -2.7690 -8.3313 -4.0615 21 6 -4.2901 -8.1671 -4.0514 22 1 -4.7708 -7.8732 -4.9845 23 6 -5.0972 -9.1163 -3.1636 24 6 -5.0899 -10.5483 -3.7539 25 6 -6.3663 -11.1769 -3.1418 26 6 -7.3940 -10.0265 -3.1461 27 6 -6.5872 -8.7164 -3.1600 28 6 -1.0257 -6.4919 -1.9100 29 6 -0.4791 -5.1642 -1.3619 30 6 -0.1034 -2.7573 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 2.5618 -4.0322 0.6574 33 1 1.8332 -4.2372 -0.9950 34 1 0.3581 -4.0631 1.7307 35 1 -2.3104 -4.6559 0.4760 36 1 -1.5035 -5.4841 1.8295 37 1 -3.2444 -6.9060 0.6751 38 1 -1.6151 -7.6262 0.6468 39 1 -2.3430 -9.1155 -3.4357 40 1 -2.2490 -8.1456 -5.0013 41 1 -4.7002 -9.1179 -2.1485 42 1 -4.2006 -11.0926 -3.4359 43 1 -5.1574 -10.5183 -4.8413 44 1 -6.1748 -11.5136 -2.1229 45 1 -6.7174 -12.0044 -3.7583 46 1 -8.0204 -10.0887 -4.0360 47 1 -8.0129 -10.0752 -2.2502 48 1 -6.8219 -8.1427 -4.0566 49 1 -6.8139 -8.1288 -2.2704 50 1 -0.2928 -7.2840 -1.7565 51 1 -1.2411 -6.3896 -2.9736 52 1 -1.1689 -4.3560 -1.6048 53 1 0.4934 -4.9598 -1.8099 54 1 -0.5272 -2.8730 -0.9970 55 1 -0.7170 -2.1390 0.6557 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941623324.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:53 Heat of formation + Delta-G solvation = 37.502868 kcal Electronic energy + Delta-G solvation = -31610.017624 eV Core-core repulsion = 27648.630185 eV Total energy + Delta-G solvation = -3961.387439 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.66586 -40.64447 -39.18356 -37.84596 -36.71057 -35.14642 -33.78318 -32.18365 -29.93361 -29.51385 -29.46049 -27.89305 -26.65203 -25.43095 -24.74442 -24.09800 -23.03627 -22.06333 -21.12827 -20.95985 -20.46559 -19.34391 -18.74263 -18.09419 -17.29299 -17.04799 -16.92529 -16.59374 -16.25377 -16.13133 -15.83314 -15.63662 -15.48815 -15.21319 -14.68080 -14.35389 -14.19899 -13.98220 -13.85629 -13.63441 -13.41109 -13.35032 -13.20222 -13.01175 -12.83762 -12.67944 -12.57345 -12.25819 -12.19222 -12.08729 -12.06505 -12.01008 -11.86654 -11.84615 -11.74126 -11.50808 -11.38807 -11.27200 -10.98881 -10.88055 -10.78193 -10.53286 -9.73204 -9.25927 -8.87297 -7.93128 -5.27377 1.43130 1.44118 1.54718 1.58278 1.95492 2.43125 2.76235 2.84136 3.27039 3.44494 3.47614 3.68361 3.75506 3.82683 3.84215 3.94498 4.01354 4.04514 4.10402 4.15208 4.25367 4.31475 4.39326 4.46944 4.52023 4.56788 4.63932 4.66742 4.69952 4.73481 4.79547 4.80428 4.88086 4.88584 4.92688 4.94172 4.97094 4.99426 5.00693 5.07232 5.10342 5.13915 5.21056 5.24936 5.36105 5.37076 5.40558 5.45676 5.50176 5.56545 5.68111 5.88503 6.05370 6.12091 6.44184 6.88284 7.18547 7.57919 8.53116 9.23094 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.023372 B = 0.002031 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.725578 B =13783.210912 C =13968.993584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.229 4.229 8 H 0.088 0.912 9 N -0.640 5.640 10 C 0.130 3.870 11 C 0.064 3.936 12 N -0.514 5.514 13 C 0.046 3.954 14 C 0.125 3.875 15 N -0.610 5.610 16 C 0.540 3.460 17 O -0.569 6.569 18 C -0.201 4.201 19 H 0.136 0.864 20 C -0.133 4.133 21 C -0.113 4.113 22 H 0.123 0.877 23 C -0.068 4.068 24 C -0.112 4.112 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.112 4.112 28 C 0.125 3.875 29 C 0.035 3.965 30 C 0.134 3.866 31 H 0.246 0.754 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.014 0.986 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.095 0.905 51 H 0.109 0.891 52 H 0.020 0.980 53 H 0.092 0.908 54 H 0.019 0.981 55 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -24.184 -9.288 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.357 4.357 8 H 0.105 0.895 9 N -0.367 5.367 10 C 0.005 3.995 11 C -0.045 4.045 12 N -0.238 5.238 13 C -0.083 4.083 14 C 0.002 3.998 15 N -0.342 5.342 16 C 0.329 3.671 17 O -0.449 6.449 18 C -0.222 4.222 19 H 0.153 0.847 20 C -0.170 4.170 21 C -0.131 4.131 22 H 0.141 0.859 23 C -0.087 4.087 24 C -0.149 4.149 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.150 4.150 28 C 0.003 3.997 29 C -0.094 4.094 30 C 0.006 3.994 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.032 0.968 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.113 0.887 51 H 0.127 0.873 52 H 0.038 0.962 53 H 0.110 0.890 54 H 0.037 0.963 55 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.034 -24.427 -8.841 27.192 hybrid contribution -0.391 2.618 0.155 2.652 sum -8.426 -21.809 -8.686 24.941 Atomic orbital electron populations 1.70049 1.06620 1.25399 1.58591 1.25678 0.96543 1.01090 1.03178 0.84983 0.78376 0.79237 0.76597 1.18527 1.22084 1.22051 1.19481 0.90935 0.83187 1.42132 0.89455 1.46156 1.03413 1.00920 1.86166 1.22825 0.95601 0.82767 0.98319 1.23840 0.95060 0.86568 0.99080 1.62080 1.19852 1.37482 1.04385 1.22422 0.89274 0.96286 1.00328 1.21630 1.01668 0.96980 0.79534 1.48289 1.10929 1.67914 1.07105 1.20195 0.81949 0.75284 0.89641 1.90630 1.33701 1.50173 1.70412 1.22248 1.11218 0.98445 0.90260 0.84684 1.23169 0.95086 0.96370 1.02339 1.22503 0.93066 0.97737 0.99803 0.85885 1.21693 0.94669 0.93903 0.98412 1.22495 0.97557 0.94231 1.00621 1.22356 0.95464 0.97723 1.00725 1.22145 0.97972 0.94416 1.01697 1.22053 0.94759 0.97352 1.00857 1.22032 0.85030 0.95820 0.96834 1.22714 1.01307 0.96783 0.88553 1.22784 0.87421 0.92729 0.96434 0.94487 0.92286 0.92613 0.88022 0.96776 0.88460 0.89913 0.89217 0.88464 0.85261 0.91446 0.91645 0.90343 0.92601 0.90454 0.90966 0.92710 0.91714 0.94185 0.88729 0.87319 0.96220 0.88971 0.96296 0.95499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.00 11.38 21.65 0.25 -58.76 16 2 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 3 Si 0.98 46.09 29.55 68.60 2.03 48.12 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.23 -12.85 10.70 84.04 0.90 -11.95 16 8 H 0.09 4.65 7.83 -2.91 -0.02 4.62 16 9 N -0.64 -32.64 3.70 -717.29 -2.65 -35.30 16 10 C 0.13 5.00 8.41 86.48 0.73 5.72 16 11 C 0.06 2.32 4.04 46.65 0.19 2.51 16 12 N -0.51 -14.83 4.76 -875.11 -4.17 -19.00 16 13 C 0.05 1.24 5.59 86.39 0.48 1.73 16 14 C 0.12 2.96 6.60 86.35 0.57 3.53 16 15 N -0.61 -14.18 3.00 -817.08 -2.45 -16.63 16 16 C 0.54 13.50 6.85 87.66 0.60 14.10 16 17 O -0.57 -17.99 13.62 -3.02 -0.04 -18.03 16 18 C -0.20 -3.64 4.32 -11.51 -0.05 -3.69 16 19 H 0.14 2.26 8.10 -2.39 -0.02 2.24 16 20 C -0.13 -1.62 9.50 30.62 0.29 -1.33 16 21 C -0.11 -1.78 4.98 -10.80 -0.05 -1.84 16 22 H 0.12 1.61 7.97 -2.39 -0.02 1.59 16 23 C -0.07 -1.29 2.17 -9.72 -0.02 -1.32 16 24 C -0.11 -1.61 6.27 31.89 0.20 -1.41 16 25 C -0.13 -1.83 6.83 31.67 0.22 -1.61 16 26 C -0.12 -2.03 6.80 31.32 0.21 -1.82 16 27 C -0.11 -2.24 6.37 31.32 0.20 -2.04 16 28 C 0.13 2.44 6.47 86.50 0.56 3.00 16 29 C 0.04 0.95 4.59 86.54 0.40 1.34 16 30 C 0.13 6.38 6.81 86.47 0.59 6.97 16 31 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.98 6.04 -2.38 -0.01 1.97 16 34 H 0.10 3.69 8.08 -2.39 -0.02 3.67 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.10 2.40 8.07 -2.39 -0.02 2.39 16 37 H 0.08 2.15 7.06 -2.39 -0.02 2.13 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.70 5.37 -2.39 -0.01 1.69 16 42 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.08 0.95 8.06 -2.39 -0.02 0.93 16 44 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 1.17 7.72 -2.38 -0.02 1.15 16 49 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.11 1.68 6.11 -2.39 -0.01 1.66 16 52 H 0.02 0.65 6.40 -2.39 -0.02 0.63 16 53 H 0.09 2.51 5.90 -2.38 -0.01 2.49 16 54 H 0.02 0.95 5.71 -2.39 -0.01 0.94 16 55 H 0.03 1.49 7.15 -2.39 -0.02 1.47 16 Total: -1.00 -71.47 411.75 0.29 -71.17 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.86 Total: 20.23 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.48 Total: 8.19 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -9.03 Total: -129.68 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.04 Total: -18.03 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -71.47 0.29 -71.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941623324.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.677 kcal (2) G-P(sol) polarization free energy of solvation -71.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds