Wall clock time and date at job start Wed Apr 1 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34779 * 119.99838 * 2 1 4 4 O 1.21275 * 119.99605 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00115 * 359.97438 * 3 2 1 6 6 N 1.46494 * 109.46815 * 180.02562 * 5 3 2 7 7 C 1.35320 * 125.86742 * 125.00044 * 6 5 3 8 8 C 1.35350 * 106.17496 * 179.97438 * 7 6 5 9 9 C 1.50701 * 126.75126 * 180.02562 * 8 7 6 10 10 C 1.53002 * 117.49772 * 343.75730 * 9 8 7 11 11 C 1.52998 * 117.50346 * 275.09292 * 9 8 7 12 12 N 1.33773 * 106.49755 * 0.02562 * 8 7 6 13 13 N 1.28639 * 108.88464 * 359.72730 * 12 8 7 14 14 C 1.46492 * 119.99616 * 179.97438 * 2 1 3 15 15 H 1.09003 * 108.44542 * 182.30768 * 14 2 1 16 16 C 1.52567 * 108.51487 * 64.77055 * 14 2 1 17 17 C 1.50823 * 109.35987 * 153.73042 * 16 14 2 18 18 C 1.53947 * 110.09964 * 91.89891 * 17 16 14 19 19 N 1.47611 * 112.13957 * 319.40597 * 18 17 16 20 20 C 1.36939 * 118.63864 * 137.86674 * 19 18 17 21 21 H 1.08003 * 119.99962 * 207.05642 * 20 19 18 22 22 C 1.38816 * 120.00293 * 27.06681 * 20 19 18 23 23 N 1.31623 * 119.99581 * 16.56819 * 22 20 19 24 24 Si 1.86801 * 120.00046 * 196.57505 * 22 20 19 25 25 H 1.48500 * 109.46813 * 94.73665 * 24 22 20 26 26 H 1.48499 * 109.46986 * 214.73235 * 24 22 20 27 27 H 1.48498 * 109.47011 * 334.73711 * 24 22 20 28 28 C 1.44577 * 122.71603 * 317.89633 * 19 18 17 29 29 C 1.47090 * 108.51845 * 300.00196 * 14 2 1 30 30 H 1.08995 * 109.47096 * 270.00098 * 1 2 3 31 31 H 1.09003 * 109.47155 * 30.00332 * 1 2 3 32 32 H 1.09002 * 109.47371 * 150.00115 * 1 2 3 33 33 H 1.08996 * 109.46772 * 299.99988 * 5 3 2 34 34 H 1.08993 * 109.47279 * 59.99976 * 5 3 2 35 35 H 1.07999 * 126.91201 * 359.97438 * 7 6 5 36 36 H 1.09003 * 115.54575 * 129.42164 * 9 8 7 37 37 H 1.08992 * 117.50142 * 359.97438 * 10 9 8 38 38 H 1.09002 * 117.49614 * 145.01626 * 10 9 8 39 39 H 1.08993 * 117.49794 * 214.97671 * 11 9 8 40 40 H 1.08999 * 117.49657 * 0.02562 * 11 9 8 41 41 H 1.08999 * 109.48876 * 273.70118 * 16 14 2 42 42 H 1.09001 * 109.49233 * 33.73909 * 16 14 2 43 43 H 1.08994 * 109.38350 * 331.68925 * 17 16 14 44 44 H 1.09004 * 109.34398 * 212.07081 * 17 16 14 45 45 H 1.09001 * 108.94980 * 198.72620 * 18 17 16 46 46 H 1.09001 * 108.94941 * 80.09013 * 18 17 16 47 47 H 0.97001 * 119.99545 * 180.02562 * 23 22 20 48 48 H 1.08995 * 109.45045 * 210.74326 * 28 19 18 49 49 H 1.08997 * 109.44558 * 330.69335 * 28 19 18 50 50 H 1.08993 * 109.32949 * 63.78884 * 29 14 2 51 51 H 1.09008 * 109.18136 * 304.22929 * 29 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 7 2.3374 3.5858 -0.0011 7 6 2.3746 4.5967 -0.8998 8 6 3.4012 5.3958 -0.5262 9 6 3.8537 6.6609 -1.2087 10 6 3.3610 6.9088 -2.6358 11 6 4.8208 6.5215 -2.3861 12 7 3.9352 4.8416 0.5680 13 7 3.2789 3.7735 0.8563 14 6 2.1974 -1.2687 0.0006 15 1 3.2647 -1.0508 0.0421 16 6 1.9056 -1.9972 -1.3078 17 6 3.0578 -2.9126 -1.6382 18 6 2.8025 -4.3152 -1.0575 19 7 2.2085 -4.2587 0.2927 20 6 1.1927 -5.1242 0.5997 21 1 0.4633 -4.8565 1.3498 22 6 1.1006 -6.3458 -0.0531 23 7 2.1366 -6.8192 -0.7127 24 14 -0.4936 -7.3178 0.0045 25 1 -1.3058 -7.0081 -1.1995 26 1 -0.1869 -8.7704 0.0345 27 1 -1.2554 -6.9473 1.2242 28 6 2.6545 -3.3269 1.3042 29 6 1.8270 -2.0214 1.2088 30 1 -0.3633 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 0.7591 2.5298 -0.8908 34 1 0.7584 2.5303 0.8891 35 1 1.7173 4.7377 -1.7451 36 1 3.9728 7.5284 -0.5596 37 1 2.7099 6.1567 -3.0812 38 1 3.1563 7.9394 -2.9257 39 1 5.5758 7.2975 -2.5118 40 1 5.1294 5.5147 -2.6674 41 1 0.9935 -2.5844 -1.2015 42 1 1.7779 -1.2690 -2.1088 43 1 3.9757 -2.5068 -1.2128 44 1 3.1637 -2.9834 -2.7207 45 1 3.7483 -4.8545 -1.0056 46 1 2.1252 -4.8546 -1.7197 47 1 2.0721 -7.6727 -1.1692 48 1 2.5204 -3.7704 2.2907 49 1 3.7092 -3.0998 1.1486 50 1 0.7662 -2.2687 1.1687 51 1 2.0210 -1.4063 2.0875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948435189.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:46 Heat of formation + Delta-G solvation = 105.849333 kcal Electronic energy + Delta-G solvation = -31116.568868 eV Core-core repulsion = 27054.604811 eV Total energy + Delta-G solvation = -4061.964057 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.28916 -41.43037 -39.35013 -38.15113 -36.90638 -35.53929 -34.56706 -33.37086 -32.27163 -31.69499 -29.67401 -28.07675 -27.58158 -25.85339 -25.08479 -25.03412 -23.68209 -22.86788 -21.78775 -21.21588 -21.03304 -20.23059 -18.80539 -18.52923 -18.26175 -17.47479 -17.03743 -16.87259 -16.57712 -16.28267 -15.76305 -15.70075 -15.41820 -15.35976 -15.28294 -14.80300 -14.40870 -14.20287 -14.01007 -13.68976 -13.63437 -13.33421 -13.21395 -13.10087 -12.95359 -12.72564 -12.55520 -12.36999 -12.29724 -12.18245 -12.12315 -11.96781 -11.80941 -11.70548 -11.59852 -11.44109 -11.39147 -11.31663 -11.18983 -10.72783 -10.44934 -9.98546 -9.72322 -8.66409 -7.84072 -5.31370 0.57194 1.24075 1.42085 1.48337 1.49438 1.49682 1.58734 1.96542 2.53222 2.87834 3.16479 3.29790 3.37259 3.64034 3.68446 3.76442 3.89331 3.97172 4.00348 4.06489 4.07450 4.19566 4.27571 4.36423 4.39577 4.40890 4.41051 4.64546 4.68274 4.71209 4.78643 4.85376 4.88179 4.96624 4.98475 5.03706 5.10402 5.11462 5.19862 5.21122 5.23403 5.27312 5.30831 5.41971 5.50441 5.54555 5.59337 5.68451 5.78016 6.31655 6.41946 7.00701 7.19066 7.52432 7.93519 8.35527 9.21655 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.002099 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.220365 B =13334.882552 C =13536.306632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.602 5.602 3 C 0.493 3.507 4 O -0.574 6.574 5 C 0.098 3.902 6 N -0.279 5.279 7 C -0.031 4.031 8 C -0.010 4.010 9 C -0.091 4.091 10 C -0.140 4.140 11 C -0.178 4.178 12 N -0.311 5.311 13 N -0.104 5.104 14 C 0.163 3.837 15 H 0.059 0.941 16 C -0.095 4.095 17 C -0.131 4.131 18 C 0.191 3.809 19 N -0.600 5.600 20 C -0.259 4.259 21 H 0.070 0.930 22 C -0.050 4.050 23 N -0.938 5.938 24 Si 0.965 3.035 25 H -0.284 1.284 26 H -0.302 1.302 27 H -0.266 1.266 28 C 0.157 3.843 29 C -0.132 4.132 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.189 0.811 34 H 0.159 0.841 35 H 0.238 0.762 36 H 0.122 0.878 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.043 0.957 44 H 0.070 0.930 45 H -0.012 1.012 46 H 0.045 0.955 47 H 0.248 0.752 48 H 0.044 0.956 49 H 0.027 0.973 50 H 0.069 0.931 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 27.007 -5.800 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.334 5.334 3 C 0.280 3.720 4 O -0.453 6.453 5 C -0.025 4.025 6 N -0.073 5.073 7 C -0.182 4.182 8 C -0.148 4.148 9 C -0.111 4.111 10 C -0.177 4.177 11 C -0.216 4.216 12 N -0.177 5.177 13 N -0.083 5.083 14 C 0.061 3.939 15 H 0.077 0.923 16 C -0.133 4.133 17 C -0.170 4.170 18 C 0.066 3.934 19 N -0.322 5.322 20 C -0.389 4.389 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.584 5.584 24 Si 0.793 3.207 25 H -0.211 1.211 26 H -0.229 1.229 27 H -0.191 1.191 28 C 0.029 3.971 29 C -0.173 4.173 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.094 0.906 33 H 0.206 0.794 34 H 0.176 0.824 35 H 0.255 0.745 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.089 0.911 45 H 0.006 0.994 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.046 0.954 50 H 0.088 0.912 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.394 26.266 -4.570 27.667 hybrid contribution -0.542 -1.208 -0.609 1.457 sum -7.936 25.058 -5.179 26.790 Atomic orbital electron populations 1.22223 0.76622 1.05450 1.03817 1.48216 1.08796 1.04612 1.71773 1.20941 0.87906 0.86416 0.76749 1.90813 1.16051 1.87370 1.51054 1.22396 0.88965 0.79643 1.11507 1.47053 1.22717 1.18808 1.18719 1.23977 1.04152 0.90128 0.99913 1.21606 0.96897 1.00082 0.96250 1.20092 1.06947 0.93062 0.90965 1.23178 0.95980 1.04523 0.94017 1.23055 0.94684 1.02854 1.01000 1.75007 1.22910 1.03667 1.16141 1.78400 1.00006 1.13495 1.16378 1.19818 0.96197 0.82365 0.95558 0.92255 1.21110 0.99196 0.97365 0.95653 1.21824 0.97896 0.96764 1.00533 1.20737 0.95148 0.92065 0.85496 1.43845 1.40854 1.38997 1.08518 1.19503 1.02960 0.95523 1.20916 0.91192 1.25810 0.99857 0.97430 1.01465 1.70257 1.29580 1.19663 1.38891 0.85290 0.80039 0.77148 0.78199 1.21090 1.22908 1.19061 1.20689 0.94945 0.89515 0.91978 1.21559 1.01967 0.97264 0.96515 0.90830 0.86894 0.90605 0.79399 0.82365 0.74542 0.86015 0.87193 0.85765 0.86999 0.90455 0.91519 0.91324 0.93794 0.91096 0.99377 0.93636 0.94324 0.93793 0.95427 0.91195 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.73 9.20 127.77 1.18 1.91 16 2 N -0.60 -13.34 2.59 -833.82 -2.16 -15.50 16 3 C 0.49 11.89 7.69 87.66 0.67 12.56 16 4 O -0.57 -21.13 14.98 -3.01 -0.05 -21.18 16 5 C 0.10 1.23 5.49 85.63 0.47 1.70 16 6 N -0.28 -5.90 3.19 -351.49 -1.12 -7.02 16 7 C -0.03 -0.50 10.89 83.49 0.91 0.41 16 8 C -0.01 -0.22 6.88 41.60 0.29 0.06 16 9 C -0.09 -1.41 6.33 -11.54 -0.07 -1.48 16 10 C -0.14 -1.14 10.03 30.62 0.31 -0.83 16 11 C -0.18 -2.45 10.24 30.62 0.31 -2.14 16 12 N -0.31 -9.87 12.41 -48.60 -0.60 -10.47 16 13 N -0.10 -3.30 12.14 37.02 0.45 -2.85 16 14 C 0.16 5.05 1.96 43.01 0.08 5.14 16 15 H 0.06 2.23 6.03 -2.39 -0.01 2.22 16 16 C -0.09 -3.02 4.34 29.74 0.13 -2.89 16 17 C -0.13 -4.90 5.71 30.21 0.17 -4.72 16 18 C 0.19 9.11 4.67 86.49 0.40 9.52 16 19 N -0.60 -28.84 2.27 -698.37 -1.58 -30.43 16 20 C -0.26 -13.46 9.43 84.03 0.79 -12.67 16 21 H 0.07 3.52 7.88 -2.91 -0.02 3.49 16 22 C -0.05 -2.72 4.84 84.86 0.41 -2.31 16 23 N -0.94 -54.71 11.11 21.65 0.24 -54.47 16 24 Si 0.96 43.28 29.59 68.60 2.03 45.31 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 C 0.16 6.46 5.66 87.37 0.49 6.96 16 29 C -0.13 -4.33 4.88 29.39 0.14 -4.19 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.29 6.44 -2.39 -0.02 0.27 16 32 H 0.08 1.14 7.25 -2.39 -0.02 1.12 16 33 H 0.19 0.20 7.33 -2.39 -0.02 0.18 16 34 H 0.16 1.08 8.11 -2.39 -0.02 1.06 16 35 H 0.24 1.04 7.45 -2.91 -0.02 1.02 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 37 H 0.11 0.58 7.23 -2.39 -0.02 0.57 16 38 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 2.33 7.23 -2.39 -0.02 2.31 16 42 H 0.07 1.88 8.05 -2.39 -0.02 1.86 16 43 H 0.04 1.68 7.31 -2.39 -0.02 1.66 16 44 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 45 H -0.01 -0.64 8.03 -2.39 -0.02 -0.66 16 46 H 0.05 2.40 6.40 -2.39 -0.02 2.39 16 47 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 48 H 0.04 1.85 7.99 -2.39 -0.02 1.83 16 49 H 0.03 1.16 8.06 -2.39 -0.02 1.14 16 50 H 0.07 2.26 7.62 -2.39 -0.02 2.24 16 51 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -84.13 401.53 4.83 -79.30 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.92 Total: 10.28 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.69 Total: 7.01 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.78 Total: -120.73 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -84.13 4.83 -79.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948435189.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.153 kcal (2) G-P(sol) polarization free energy of solvation -84.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds