Wall clock time and date at job start Wed Apr 1 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50704 * 119.99664 * 2 1 4 4 C 1.53003 * 109.47135 * 124.99848 * 3 2 1 5 5 N 1.46507 * 109.47045 * 180.02562 * 4 3 2 6 6 C 1.34817 * 126.59292 * 124.99862 * 5 4 3 7 7 C 1.36593 * 106.83354 * 180.02562 * 6 5 4 8 8 C 1.47529 * 125.76595 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00129 * 353.64617 * 8 7 6 10 10 N 1.34781 * 119.99588 * 173.64131 * 8 7 6 11 11 C 1.46493 * 120.00291 * 3.26107 * 10 8 7 12 12 C 1.46497 * 119.99337 * 183.25698 * 10 8 7 13 13 H 1.09000 * 110.21625 * 0.02562 * 12 10 8 14 14 C 1.50127 * 110.24718 * 121.93862 * 12 10 8 15 15 C 1.54636 * 110.93111 * 216.54060 * 14 12 10 16 16 C 1.54897 * 110.18804 * 321.33879 * 15 14 12 17 17 N 1.43435 * 116.08213 * 318.52425 * 16 15 14 18 18 C 1.36935 * 120.53734 * 271.59359 * 17 16 15 19 19 H 1.08001 * 119.99998 * 326.30634 * 18 17 16 20 20 C 1.38813 * 120.00068 * 146.30247 * 18 17 16 21 21 N 1.31616 * 119.99952 * 3.30110 * 20 18 17 22 22 Si 1.86800 * 119.99970 * 183.29323 * 20 18 17 23 23 H 1.48493 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.46686 * 120.00351 * 22 20 18 25 25 H 1.48496 * 109.47211 * 240.00255 * 22 20 18 26 26 C 1.50168 * 118.92179 * 91.56470 * 17 16 15 27 27 C 1.46231 * 107.53523 * 289.59094 * 26 17 16 28 28 N 1.34396 * 108.46320 * 0.26322 * 7 6 5 29 29 N 1.28762 * 109.52099 * 359.55273 * 28 7 6 30 30 H 1.08005 * 119.99565 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00661 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.00661 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47570 * 4.99432 * 3 2 1 34 34 H 1.09005 * 109.46982 * 244.99355 * 3 2 1 35 35 H 1.08992 * 109.47585 * 59.99544 * 4 3 2 36 36 H 1.09005 * 109.46783 * 299.99628 * 4 3 2 37 37 H 1.07995 * 126.58016 * 0.02562 * 6 5 4 38 38 H 1.09008 * 109.47033 * 84.04091 * 11 10 8 39 39 H 1.08994 * 109.47510 * 204.03876 * 11 10 8 40 40 H 1.08999 * 109.47269 * 324.04012 * 11 10 8 41 41 H 1.08995 * 109.21018 * 336.99752 * 14 12 10 42 42 H 1.09008 * 109.20928 * 96.30971 * 14 12 10 43 43 H 1.08994 * 109.43115 * 201.05721 * 15 14 12 44 44 H 1.09000 * 109.13015 * 81.42842 * 15 14 12 45 45 H 1.09004 * 108.15706 * 196.81150 * 16 15 14 46 46 H 1.09001 * 108.15974 * 80.24538 * 16 15 14 47 47 H 0.96999 * 120.00357 * 179.97438 * 21 20 18 48 48 H 1.09009 * 109.84141 * 170.08777 * 26 17 16 49 49 H 1.08997 * 109.90351 * 49.14126 * 26 17 16 50 50 H 1.09002 * 108.52511 * 297.16720 * 27 26 17 51 51 H 1.09003 * 108.52260 * 179.65192 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1817 5 7 3.7669 2.6023 1.1820 6 6 3.8478 3.4832 2.1994 7 6 4.6264 4.5182 1.7655 8 6 4.9860 5.7146 2.5503 9 8 4.4879 5.8963 3.6445 10 7 5.8669 6.6061 2.0543 11 6 6.4127 6.4247 0.7070 12 6 6.2782 7.7565 2.8626 13 1 5.7783 7.7346 3.8310 14 6 7.7681 7.7556 3.0474 15 6 8.1500 8.2566 4.4596 16 6 7.2224 9.4229 4.8820 17 7 6.9231 10.3903 3.8661 18 6 7.7379 11.4743 3.6758 19 1 8.2395 11.9272 4.5182 20 6 7.9191 11.9910 2.4003 21 7 7.2577 11.4804 1.3833 22 14 9.1014 13.4111 2.1271 23 1 9.7158 13.7998 3.4219 24 1 10.1663 12.9934 1.1800 25 1 8.3626 14.5687 1.5620 26 6 5.7020 10.1946 3.0141 27 6 5.9580 9.0566 2.1321 28 7 5.0043 4.2655 0.5008 29 7 4.5176 3.1345 0.1241 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5401 0.9352 -0.0004 32 1 1.8501 -0.9352 0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7398 0.5068 1.0923 36 1 2.4770 1.2358 2.1131 37 1 3.3856 3.3886 3.1708 38 1 5.7187 6.8382 -0.0249 39 1 7.3705 6.9393 0.6307 40 1 6.5550 5.3616 0.5127 41 1 8.1457 6.7422 2.9115 42 1 8.2222 8.4095 2.3028 43 1 9.1841 8.6009 4.4548 44 1 8.0455 7.4364 5.1699 45 1 7.6895 9.9425 5.7187 46 1 6.2823 8.9987 5.2347 47 1 7.3840 11.8417 0.4920 48 1 5.5184 11.0896 2.4195 49 1 4.8384 9.9865 3.6456 50 1 6.7971 9.3043 1.4819 51 1 5.0777 8.8962 1.5096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948840742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:10 Heat of formation + Delta-G solvation = 124.893556 kcal Electronic energy + Delta-G solvation = -31154.032053 eV Core-core repulsion = 27092.893815 eV Total energy + Delta-G solvation = -4061.138238 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.34869 -39.59933 -37.52716 -36.80425 -35.13832 -34.08619 -32.70514 -31.37852 -30.87748 -30.47492 -29.51408 -26.60040 -26.08828 -25.00973 -24.39842 -23.00973 -22.74091 -22.00030 -20.45329 -20.05657 -19.52006 -18.47105 -17.52501 -16.69397 -16.47053 -16.29070 -16.04384 -15.57278 -15.11028 -14.89094 -14.74998 -14.28190 -14.03928 -13.68457 -13.61610 -13.48559 -13.25427 -13.05318 -12.73675 -12.62104 -12.46316 -12.21255 -11.89043 -11.86562 -11.70948 -11.63432 -11.23209 -11.07399 -10.83799 -10.77832 -10.66546 -10.54794 -10.17954 -10.03998 -9.96051 -9.88516 -9.85687 -9.57136 -9.36570 -9.32106 -9.23904 -8.39619 -8.03933 -6.48865 -5.73492 -3.25965 0.98824 1.59036 1.73430 1.88609 3.31258 3.39240 3.46256 3.47616 3.49098 3.95580 4.10574 4.19748 4.39166 4.53136 4.60986 4.63123 4.69002 4.85265 4.99644 5.20847 5.33341 5.39439 5.40894 5.50307 5.54688 5.67813 5.73041 5.85434 5.97423 6.02011 6.04675 6.11474 6.17499 6.28902 6.36552 6.40347 6.43708 6.62641 6.67648 6.75729 6.97831 7.01820 7.04260 7.18585 7.22423 7.35750 7.66500 7.79057 7.84553 7.90275 8.05219 8.45486 8.57687 9.28190 9.90804 10.49317 11.31936 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025464 B = 0.002126 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.340167 B =13169.980822 C =13518.595557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C -0.107 4.107 4 C 0.127 3.873 5 N -0.364 5.364 6 C 0.089 3.911 7 C -0.090 4.090 8 C 0.594 3.406 9 O -0.547 6.547 10 N -0.584 5.584 11 C 0.077 3.923 12 C 0.140 3.860 13 H 0.098 0.902 14 C -0.112 4.112 15 C -0.138 4.138 16 C 0.156 3.844 17 N -0.590 5.590 18 C -0.245 4.245 19 H 0.064 0.936 20 C 0.008 3.992 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.167 3.833 27 C -0.128 4.128 28 N -0.200 5.200 29 N -0.072 5.072 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.203 0.797 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.031 0.969 46 H 0.028 0.972 47 H 0.252 0.748 48 H 0.100 0.900 49 H 0.002 0.998 50 H 0.102 0.898 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -23.414 -2.020 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.178 4.178 3 C -0.145 4.145 4 C 0.006 3.994 5 N -0.149 5.149 6 C -0.067 4.067 7 C -0.229 4.229 8 C 0.380 3.620 9 O -0.425 6.425 10 N -0.314 5.314 11 C -0.067 4.067 12 C 0.039 3.961 13 H 0.116 0.884 14 C -0.150 4.150 15 C -0.180 4.180 16 C 0.027 3.973 17 N -0.312 5.312 18 C -0.375 4.375 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.043 3.957 27 C -0.168 4.168 28 N -0.073 5.073 29 N -0.052 5.052 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.220 0.780 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.047 0.953 47 H 0.062 0.938 48 H 0.118 0.882 49 H 0.020 0.980 50 H 0.120 0.880 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.834 -23.456 -3.054 25.617 hybrid contribution 0.352 0.557 0.494 0.823 sum -9.482 -22.899 -2.560 24.917 Atomic orbital electron populations 1.23972 0.95902 1.02334 0.99474 1.22737 0.96013 0.97635 1.01369 1.21032 0.98040 0.96762 0.98648 1.22001 0.94432 0.81474 1.01482 1.50516 1.35993 1.17391 1.10995 1.23360 0.98492 0.89519 0.95374 1.21625 1.07730 1.00254 0.93262 1.16828 0.79561 0.81025 0.84619 1.90774 1.54418 1.76453 1.20824 1.47913 1.42238 1.24398 1.16822 1.22061 0.99178 1.03152 0.82293 1.20740 0.95676 0.84574 0.95156 0.88429 1.21710 0.94849 0.99240 0.99216 1.22766 1.01031 0.98889 0.95288 1.20436 0.95394 0.89616 0.91862 1.44099 1.24856 1.22261 1.39952 1.19218 1.21351 1.05339 0.91638 0.91828 1.25241 0.98594 0.99478 0.95654 1.69874 1.42750 1.42921 0.99200 0.86250 0.81167 0.81828 0.77724 1.20424 1.21704 1.21866 1.20174 0.85722 0.98169 0.91645 1.21336 1.02602 0.92844 0.99985 1.74828 1.14904 1.07152 1.10417 1.81967 1.09230 1.05490 1.08530 0.88013 0.88344 0.86729 0.90510 0.89009 0.88244 0.87631 0.77989 0.92632 0.91081 0.89427 0.94214 0.90612 0.92791 0.93796 0.95031 0.95342 0.93770 0.88186 0.97990 0.87982 0.95217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.75 14.32 29.02 0.42 -0.34 16 2 C -0.16 -0.65 9.52 -36.02 -0.34 -0.99 16 3 C -0.11 -0.56 5.86 -27.88 -0.16 -0.72 16 4 C 0.13 0.63 6.52 -4.04 -0.03 0.60 16 5 N -0.36 -3.40 3.69 -61.06 -0.23 -3.62 16 6 C 0.09 0.94 11.28 -16.83 -0.19 0.75 16 7 C -0.09 -1.29 6.69 -83.55 -0.56 -1.85 16 8 C 0.59 10.43 7.67 -12.47 -0.10 10.33 16 9 O -0.55 -10.79 16.23 5.29 0.09 -10.71 16 10 N -0.58 -10.46 2.63 -177.10 -0.47 -10.93 16 11 C 0.08 1.22 8.85 59.84 0.53 1.75 16 12 C 0.14 2.80 2.29 -69.60 -0.16 2.64 16 13 H 0.10 2.12 5.12 -51.93 -0.27 1.86 16 14 C -0.11 -2.21 4.31 -27.30 -0.12 -2.33 16 15 C -0.14 -2.72 6.40 -24.87 -0.16 -2.88 16 16 C 0.16 3.40 5.17 -4.66 -0.02 3.37 16 17 N -0.59 -14.64 2.60 -175.08 -0.45 -15.10 16 18 C -0.25 -6.60 9.59 -15.06 -0.14 -6.74 16 19 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 20 C 0.01 0.22 5.33 -17.43 -0.09 0.13 16 21 N -0.90 -24.52 8.85 55.49 0.49 -24.03 16 22 Si 0.90 21.41 29.56 -169.99 -5.02 16.38 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.17 4.02 5.23 -5.21 -0.03 3.99 16 27 C -0.13 -2.84 4.15 -30.19 -0.13 -2.97 16 28 N -0.20 -2.88 8.82 32.85 0.29 -2.59 16 29 N -0.07 -0.91 13.65 60.35 0.82 -0.09 16 30 H 0.10 0.32 8.06 -52.48 -0.42 -0.10 16 31 H 0.10 0.42 7.84 -52.49 -0.41 0.01 16 32 H 0.11 0.34 8.06 -52.49 -0.42 -0.09 16 33 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.11 0.28 8.08 -51.93 -0.42 -0.14 16 37 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.07 1.14 7.24 -51.93 -0.38 0.76 16 40 H 0.09 1.31 5.32 -51.93 -0.28 1.03 16 41 H 0.04 0.72 7.88 -51.93 -0.41 0.31 16 42 H 0.08 1.69 6.84 -51.92 -0.36 1.34 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.68 8.00 -51.93 -0.42 0.26 16 46 H 0.03 0.60 6.90 -51.93 -0.36 0.24 16 47 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 48 H 0.10 2.67 6.10 -51.92 -0.32 2.35 16 49 H 0.00 0.05 8.13 -51.93 -0.42 -0.37 16 50 H 0.10 2.51 5.22 -51.93 -0.27 2.24 16 51 H 0.03 0.64 8.02 -51.93 -0.42 0.23 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -31.13 400.01 -7.78 -38.91 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.05 Total: 0.99 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -1.28 Total: 4.75 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.46 Total: -56.36 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.13 -7.78 -38.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948840742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.805 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds